java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmTamuraTexture
extends AlgorithmBase
```
DOCUMENT ME!

Version:

0.1 July 6, 2012

Author:

William Gandler In the coarseness measurement a 32 wide pixel rim around the edge is excluded from the calculation. The contrast measurement uses all the pixels. The directionality measurement excludes a 1 wide pixel rim around the edge. All measurements are calculated for whole slice values and individual pixel values. Directionality uses the gradient filter for the whole slice result and the Sobel filter for the pixel result. References: 1.) "Textural Features Corresponding to Visual Perception" by Hideyuki Tamura, Shunji Mori, and Takashi Yamawaki, IEEE Transactions on Systems, Man, and Cybernetics, Vol. SMC-8, No. 6, June, 1978, pp. 460 - 473. 2.) "A Relevance Feedback Retrieval Method Based on Tamura Texture" by Ya-Li Qi, 2009 Second International Symposium on Knowledge Acquisition and Modeling, 2009, pp. 174-177.

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private double`	`coarsenessThreshold`	coarsenessThreshold must be
`private int`	`cSize`
`private ModelImage[]`	`destImage`
`private boolean`	`doCoarseness`
`private boolean`	`doContrast`
`private boolean`	`doDirectionality`
`private int`	`histogramBins`
`private double`	`histogramThreshold`
`private static int`	`RED_OFFSET`	Red channel.
`private int`	`RGBOffset`

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmTamuraTexture(ModelImage[] destImage, ModelImage srcImg, boolean doCoarseness, double coarsenessThreshold, boolean doContrast, int cSize, boolean doDirectionality, int histogramBins, double histogramThreshold)`	Creates a new AlgorithmTamuraTexture object for black and white image.
`AlgorithmTamuraTexture(ModelImage[] destImage, ModelImage srcImg, int RGBOffset, boolean doCoarseness, double coarsenessThreshold, boolean doContrast, int cSize, boolean doDirectionality, int histogramBins, double histogramThreshold)`	Creates a new AlgorithmTamuraTexture object for color image.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`calculateSliceTamuraTexture()`
`void`	`finalize()`	Prepares this class for destruction.
`void`	`runAlgorithm()`	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail
- destImage
```
private ModelImage[] destImage
```
- RED_OFFSET
```
private static final int RED_OFFSET
```
  Red channel.
  
  See Also:
  
  Constant Field Values
- coarsenessThreshold
```
private double coarsenessThreshold
```
  coarsenessThreshold must be = coarsenessThreshold * Emax. If coarsenessThreshold = 1.0, select the largest k which gives Emax.
- doCoarseness
```
private boolean doCoarseness
```
- doContrast
```
private boolean doContrast
```
- cSize
```
private int cSize
```
- doDirectionality
```
private boolean doDirectionality
```
- histogramBins
```
private int histogramBins
```
- histogramThreshold
```
private double histogramThreshold
```
- RGBOffset
```
private int RGBOffset
```

Constructor Detail

AlgorithmTamuraTexture

public AlgorithmTamuraTexture(ModelImage[] destImage,
                              ModelImage srcImg,
                              boolean doCoarseness,
                              double coarsenessThreshold,
                              boolean doContrast,
                              int cSize,
                              boolean doDirectionality,
                              int histogramBins,
                              double histogramThreshold)

Creates a new AlgorithmTamuraTexture object for black and white image.

Parameters:: destImage - array; srcImg - source image model; doCoarseness -; coarsenessThreshold -; doContrast -; cSize -; doDirectionality -; histogramBins -; histogramThreshold -

AlgorithmTamuraTexture

public AlgorithmTamuraTexture(ModelImage[] destImage,
                              ModelImage srcImg,
                              int RGBOffset,
                              boolean doCoarseness,
                              double coarsenessThreshold,
                              boolean doContrast,
                              int cSize,
                              boolean doDirectionality,
                              int histogramBins,
                              double histogramThreshold)

Creates a new AlgorithmTamuraTexture object for color image.

Parameters:: destImage - array; srcImg - source image model; RGBOffset - selects red, green, or blue channel; doCoarseness -; coarsenessThreshold -; doContrast -; cSize -; doDirectionality -; histogramBins -; histogramThreshold -

Method Detail
- finalize
```
public void finalize()
```
  Prepares this class for destruction.
  
  Overrides:
  
  finalize in class AlgorithmBase
- runAlgorithm
```
public void runAlgorithm()
```
  Starts the program.
  
  Specified by:
  
  runAlgorithm in class AlgorithmBase
- calculateSliceTamuraTexture
```
private void calculateSliceTamuraTexture()
```

Class AlgorithmTamuraTexture

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

destImage

RED_OFFSET

coarsenessThreshold

doCoarseness

doContrast

cSize

doDirectionality

histogramBins

histogramThreshold

RGBOffset

Constructor Detail

AlgorithmTamuraTexture

AlgorithmTamuraTexture

Method Detail

finalize

runAlgorithm

calculateSliceTamuraTexture