Package gov.nih.mipav.view.renderer.WildMagic.Render

Class ImageRegistrationGPU

java.lang.Object

WildMagic.LibApplications.OpenGLApplication.Application

WildMagic.LibApplications.OpenGLApplication.JavaApplication

WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

All Implemented Interfaces:

KeyListener, MouseListener, MouseMotionListener, MouseWheelListener, Serializable, EventListener

public class ImageRegistrationGPU
extends WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
private float[]	m_afBracket
(package private) float[]	m_afBracketB
private float[]	m_afPt
private float[]	m_afStartPoint
private float[]	m_afUnitDirections
protected VolumeHistogramEffect	m_akCollapse2D
protected VolumeHistogramEffect	m_akCollapseColumns
protected VolumeHistogramEffect	m_akCollapseRows
protected ImageReduceEffect	m_akImageReduceEntropy
private boolean	m_bCalcLineMin
private boolean	m_bCleanUp
protected boolean	m_bDisplay
private boolean	m_bDispose
private boolean	m_bDisposeComplete
protected boolean	m_bInit
private boolean	m_bStatus
private double	m_dHx
private double	m_dHxy
private double	m_dHy
private double	m_dOverlap
private float	m_fDim
private float	m_fMinDist
private float	m_fPtLength
private float	m_fRigid
private float	m_fUnitTolerance
private int	m_iRenderLoops
protected static int	m_iScreenCaptureCounter
private WildMagic.LibGraphics.Rendering.AlphaState	m_kAlpha
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	m_kBracketNewOut
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	m_kBracketOut
private WildMagic.LibGraphics.SceneGraph.Polypoint	m_kBracketPoints
protected LineMinimizationEffect	m_kCalcTransform
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	m_kEntropyOut
private WildMagic.LibGraphics.SceneGraph.Polypoint	m_kEntropyPoints2D
protected JFrame	m_kFrame
private WildMagic.LibFoundation.Mathematics.Matrix4f	m_kFromOrigin
private WildMagic.LibFoundation.Mathematics.Matrix4f	m_kFromOriginInv
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	m_kHistogramOutput
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	m_kHistogramOutputB
private WildMagic.LibGraphics.SceneGraph.Polypoint	m_kHistogramPoints2D
private ModelSimpleImage	m_kImageA
private ModelSimpleImage	m_kImageB
protected VolumeHistogramEffect	m_kImageEffectDual
protected LineMinimizationEffect	m_kImageLineMinDual
protected LineMinimizationEffect	m_kImageLineMinPass2a
private WildMagic.LibGraphics.SceneGraph.Polypoint	m_kImagePointsDual
private WildMagic.LibFoundation.Mathematics.Matrix4f	m_kImageTransform
private WildMagic.LibFoundation.Mathematics.Matrix4d	m_kImageTransformd
private ModelSimpleImage	m_kMoving
private String	m_kNameA
private String	m_kNameB
private ModelSimpleImage	m_kTarget
private WildMagic.LibGraphics.Rendering.Texture	m_kTextureA
private WildMagic.LibGraphics.Rendering.Texture	m_kTextureB
private WildMagic.LibFoundation.Mathematics.Matrix4f	m_kToOrigin
private WildMagic.LibFoundation.Mathematics.Matrix4f	m_kToOriginInv
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	m_kTransformOut
private WildMagic.LibGraphics.SceneGraph.Polypoint	m_kTransformPoints
private static final long	serialVersionUID

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors

Constructor	Description
ImageRegistrationGPU(ModelSimpleImage kTarget, ModelSimpleImage kMoving)

Method Summary

Modifier and Type	Method	Description
private void	calcEntropy()
private void	calcEntropy(ModelSimpleImage kImage, double dNumSamples)
void	calcError(TransMatrix kTransform)
void	calcError(TransMatrixd kTransform)
private void	calcLineMin()
void	calcLineMinimization()
boolean	checkStatus()
private void	cleanUp()
WildMagic.LibFoundation.Mathematics.Matrix4f	convertTo4D(WildMagic.LibFoundation.Mathematics.Matrix4f kTransform)
static ImageRegistrationGPU	create(ModelSimpleImage kTarget, ModelSimpleImage kMoving)
protected void	CreateBracketMesh()
protected void	CreateHistogramMesh(int iWidth, int iHeight)
protected WildMagic.LibGraphics.Rendering.ResourceIdentifier	CreateImageMesh(int iWidth, int iHeight, int iDepth)
private void	CreateImageTextures()
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	CreateRenderTarget(com.jogamp.opengl.GLAutoDrawable arg0, String kImageName, int iWidth, int iHeight)
private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer	CreateRenderTargetInit(com.jogamp.opengl.GLAutoDrawable arg0, String kImageName, int iWidth, int iHeight)
protected void	CreateScene(com.jogamp.opengl.GLAutoDrawable arg0)
private void	CreateTransformMesh()
void	display(com.jogamp.opengl.GLAutoDrawable arg0)
void	dispose()
void	dispose(com.jogamp.opengl.GLAutoDrawable arg0)
float[]	getBracketB()
com.jogamp.opengl.awt.GLCanvas	GetCanvas()
double	getError()
void	init(com.jogamp.opengl.GLAutoDrawable arg0)
void	initImages(ModelSimpleImage kImageA, ModelSimpleImage kImageB, int iNBins)
void	initLineMin(WildMagic.LibFoundation.Mathematics.Matrix4f kToOrigin, WildMagic.LibFoundation.Mathematics.Matrix4f kFromOrigin, float rigid, float dim, double[] startPoint, double[] pt, int ptLength, double[] unitDirections, double unit_tolerance, double fMinDist, double bracketA, double functionA, double bracketB, double functionB, double bracketC, double functionC)
private void	printTarget(String kMsg, WildMagic.LibGraphics.Rendering.Texture kTarget)
private void	ReduceDualA(double dNumSamples)
void	reshape(com.jogamp.opengl.GLAutoDrawable arg0, int iX, int iY, int iWidth, int iHeight)
void	SetFrame(JFrame kFrame)
void	setFromOrigin(TransMatrix kFromOrigin)
void	setToOrigin(TransMatrix kToOrigin)
void	setTransform(TransMatrix kTransform)
void	setTransform(TransMatrixd kTransform)
boolean	writeImage()

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyPressed, keyReleased, keyTyped, LookDown, LookUp, MeasureTime, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mouseReleased, mouseWheelMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

reloadShaders, TestStreaming

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

m_iScreenCaptureCounter

protected static int m_iScreenCaptureCounter

m_akCollapse2D

protected VolumeHistogramEffect m_akCollapse2D

m_akCollapseColumns

protected VolumeHistogramEffect m_akCollapseColumns

m_akCollapseRows

protected VolumeHistogramEffect m_akCollapseRows

m_akImageReduceEntropy

protected ImageReduceEffect m_akImageReduceEntropy

m_kImageEffectDual

protected VolumeHistogramEffect m_kImageEffectDual

m_kImageLineMinPass2a

protected LineMinimizationEffect m_kImageLineMinPass2a

m_kImageLineMinDual

protected LineMinimizationEffect m_kImageLineMinDual

m_kCalcTransform

protected LineMinimizationEffect m_kCalcTransform

m_kImagePointsDual

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kImagePointsDual

m_kHistogramPoints2D

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kHistogramPoints2D

m_kEntropyPoints2D

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kEntropyPoints2D

m_kBracketPoints

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kBracketPoints

m_kTransformPoints

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kTransformPoints

m_kHistogramOutput

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kHistogramOutput

m_kHistogramOutputB

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kHistogramOutputB

m_kEntropyOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kEntropyOut

m_kTransformOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kTransformOut

m_kBracketOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kBracketOut

m_kBracketNewOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kBracketNewOut

m_kAlpha

private WildMagic.LibGraphics.Rendering.AlphaState m_kAlpha

m_kImageA

private ModelSimpleImage m_kImageA

m_kImageB

private ModelSimpleImage m_kImageB

m_kTarget

private ModelSimpleImage m_kTarget

m_kMoving

private ModelSimpleImage m_kMoving

m_kNameA

private String m_kNameA

m_kNameB

private String m_kNameB

m_kTextureA

private WildMagic.LibGraphics.Rendering.Texture m_kTextureA

m_kTextureB

private WildMagic.LibGraphics.Rendering.Texture m_kTextureB

m_dHx

private double m_dHx

m_dHy

private double m_dHy

m_dHxy

private double m_dHxy

m_dOverlap

private double m_dOverlap

m_kImageTransform

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kImageTransform

m_kImageTransformd

private WildMagic.LibFoundation.Mathematics.Matrix4d m_kImageTransformd

m_kFrame

protected JFrame m_kFrame

m_fUnitTolerance

private float m_fUnitTolerance

m_kToOrigin

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kToOrigin

m_kFromOrigin

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kFromOrigin

m_kToOriginInv

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kToOriginInv

m_kFromOriginInv

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kFromOriginInv

m_fRigid

private float m_fRigid

m_fDim

private float m_fDim

m_afStartPoint

private float[] m_afStartPoint

m_afPt

private float[] m_afPt

m_fPtLength

private float m_fPtLength

m_afUnitDirections

private float[] m_afUnitDirections

m_fMinDist

private float m_fMinDist

m_afBracketB

float[] m_afBracketB

m_bDisposeComplete

private boolean m_bDisposeComplete

m_bDispose

private boolean m_bDispose

m_bDisplay

protected boolean m_bDisplay

m_bInit

protected boolean m_bInit

m_bCleanUp

private boolean m_bCleanUp

m_bStatus

private boolean m_bStatus

m_bCalcLineMin

private boolean m_bCalcLineMin

m_afBracket

private float[] m_afBracket

m_iRenderLoops

private int m_iRenderLoops

Constructor Details

ImageRegistrationGPU

public ImageRegistrationGPU(ModelSimpleImage kTarget,
 ModelSimpleImage kMoving)

Method Details

create

public static ImageRegistrationGPU create(ModelSimpleImage kTarget,
 ModelSimpleImage kMoving)

calcError

public void calcError(TransMatrix kTransform)

calcError

public void calcError(TransMatrixd kTransform)

calcLineMinimization

public void calcLineMinimization()

checkStatus

public boolean checkStatus()

convertTo4D

public WildMagic.LibFoundation.Mathematics.Matrix4f convertTo4D(WildMagic.LibFoundation.Mathematics.Matrix4f kTransform)

display

public void display(com.jogamp.opengl.GLAutoDrawable arg0)

dispose

public void dispose()

Overrides:

dispose in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

dispose

public void dispose(com.jogamp.opengl.GLAutoDrawable arg0)

getBracketB

public float[] getBracketB()

GetCanvas

public com.jogamp.opengl.awt.GLCanvas GetCanvas()

getError

public double getError()

init

public void init(com.jogamp.opengl.GLAutoDrawable arg0)

initImages

public void initImages(ModelSimpleImage kImageA,
 ModelSimpleImage kImageB,
 int iNBins)

initLineMin

public void initLineMin(WildMagic.LibFoundation.Mathematics.Matrix4f kToOrigin,
 WildMagic.LibFoundation.Mathematics.Matrix4f kFromOrigin,
 float rigid,
 float dim,
 double[] startPoint,
 double[] pt,
 int ptLength,
 double[] unitDirections,
 double unit_tolerance,
 double fMinDist,
 double bracketA,
 double functionA,
 double bracketB,
 double functionB,
 double bracketC,
 double functionC)

reshape

public void reshape(com.jogamp.opengl.GLAutoDrawable arg0,
 int iX,
 int iY,
 int iWidth,
 int iHeight)

SetFrame

public void SetFrame(JFrame kFrame)

setFromOrigin

public void setFromOrigin(TransMatrix kFromOrigin)

setToOrigin

public void setToOrigin(TransMatrix kToOrigin)

setTransform

public void setTransform(TransMatrix kTransform)

setTransform

public void setTransform(TransMatrixd kTransform)

writeImage

public boolean writeImage()

CreateBracketMesh

protected void CreateBracketMesh()

CreateHistogramMesh

protected void CreateHistogramMesh(int iWidth,
 int iHeight)

CreateImageMesh

protected WildMagic.LibGraphics.Rendering.ResourceIdentifier CreateImageMesh(int iWidth,
 int iHeight,
 int iDepth)

CreateScene

protected void CreateScene(com.jogamp.opengl.GLAutoDrawable arg0)

calcEntropy

private void calcEntropy()

calcEntropy

private void calcEntropy(ModelSimpleImage kImage,
 double dNumSamples)

calcLineMin

private void calcLineMin()

cleanUp

private void cleanUp()

CreateImageTextures

private void CreateImageTextures()

CreateRenderTarget

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer CreateRenderTarget(com.jogamp.opengl.GLAutoDrawable arg0,
 String kImageName,
 int iWidth,
 int iHeight)

CreateRenderTargetInit

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer CreateRenderTargetInit(com.jogamp.opengl.GLAutoDrawable arg0,
 String kImageName,
 int iWidth,
 int iHeight)

CreateTransformMesh

private void CreateTransformMesh()

printTarget

private void printTarget(String kMsg,
 WildMagic.LibGraphics.Rendering.Texture kTarget)

ReduceDualA

private void ReduceDualA(double dNumSamples)