java.lang.Object
- WildMagic.LibApplications.OpenGLApplication.Application
- - WildMagic.LibApplications.OpenGLApplication.JavaApplication
  - - WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    - - gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU

All Implemented Interfaces:

java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.io.Serializable, java.util.EventListener
```
public class ImageRegistrationGPU
extends WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`private float[]`	`m_afBracket`
`(package private) float[]`	`m_afBracketB`
`private float[]`	`m_afPt`
`private float[]`	`m_afStartPoint`
`private float[]`	`m_afUnitDirections`
`protected VolumeHistogramEffect`	`m_akCollapse2D`
`protected VolumeHistogramEffect`	`m_akCollapseColumns`
`protected VolumeHistogramEffect`	`m_akCollapseRows`
`protected ImageReduceEffect`	`m_akImageReduceEntropy`
`private boolean`	`m_bCalcLineMin`
`private boolean`	`m_bCleanUp`
`protected boolean`	`m_bDisplay`
`private boolean`	`m_bDispose`
`private boolean`	`m_bDisposeComplete`
`protected boolean`	`m_bInit`
`private boolean`	`m_bStatus`
`private double`	`m_dHx`
`private double`	`m_dHxy`
`private double`	`m_dHy`
`private double`	`m_dOverlap`
`private float`	`m_fDim`
`private float`	`m_fMinDist`
`private float`	`m_fPtLength`
`private float`	`m_fRigid`
`private float`	`m_fUnitTolerance`
`private int`	`m_iRenderLoops`
`protected static int`	`m_iScreenCaptureCounter`
`private WildMagic.LibGraphics.Rendering.AlphaState`	`m_kAlpha`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kBracketNewOut`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kBracketOut`
`private WildMagic.LibGraphics.SceneGraph.Polypoint`	`m_kBracketPoints`
`protected LineMinimizationEffect`	`m_kCalcTransform`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kEntropyOut`
`private WildMagic.LibGraphics.SceneGraph.Polypoint`	`m_kEntropyPoints2D`
`protected javax.swing.JFrame`	`m_kFrame`
`private WildMagic.LibFoundation.Mathematics.Matrix4f`	`m_kFromOrigin`
`private WildMagic.LibFoundation.Mathematics.Matrix4f`	`m_kFromOriginInv`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kHistogramOutput`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kHistogramOutputB`
`private WildMagic.LibGraphics.SceneGraph.Polypoint`	`m_kHistogramPoints2D`
`private ModelSimpleImage`	`m_kImageA`
`private ModelSimpleImage`	`m_kImageB`
`protected VolumeHistogramEffect`	`m_kImageEffectDual`
`protected LineMinimizationEffect`	`m_kImageLineMinDual`
`protected LineMinimizationEffect`	`m_kImageLineMinPass2a`
`private WildMagic.LibGraphics.SceneGraph.Polypoint`	`m_kImagePointsDual`
`private WildMagic.LibFoundation.Mathematics.Matrix4f`	`m_kImageTransform`
`private WildMagic.LibFoundation.Mathematics.Matrix4d`	`m_kImageTransformd`
`private ModelSimpleImage`	`m_kMoving`
`private java.lang.String`	`m_kNameA`
`private java.lang.String`	`m_kNameB`
`private ModelSimpleImage`	`m_kTarget`
`private WildMagic.LibGraphics.Rendering.Texture`	`m_kTextureA`
`private WildMagic.LibGraphics.Rendering.Texture`	`m_kTextureB`
`private WildMagic.LibFoundation.Mathematics.Matrix4f`	`m_kToOrigin`
`private WildMagic.LibFoundation.Mathematics.Matrix4f`	`m_kToOriginInv`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kTransformOut`
`private WildMagic.LibGraphics.SceneGraph.Polypoint`	`m_kTransformPoints`
`private static long`	`serialVersionUID`

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors
Constructor Description

ImageRegistrationGPU(ModelSimpleImage kTarget, ModelSimpleImage kMoving)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`calcEntropy()`
`private void`	`calcEntropy(ModelSimpleImage kImage, double dNumSamples)`
`void`	`calcError(TransMatrix kTransform)`
`void`	`calcError(TransMatrixd kTransform)`
`private void`	`calcLineMin()`
`void`	`calcLineMinimization()`
`boolean`	`checkStatus()`
`private void`	`cleanUp()`
`WildMagic.LibFoundation.Mathematics.Matrix4f`	`convertTo4D(WildMagic.LibFoundation.Mathematics.Matrix4f kTransform)`
`static ImageRegistrationGPU`	`create(ModelSimpleImage kTarget, ModelSimpleImage kMoving)`
`protected void`	`CreateBracketMesh()`
`protected void`	`CreateHistogramMesh(int iWidth, int iHeight)`
`protected WildMagic.LibGraphics.Rendering.ResourceIdentifier`	`CreateImageMesh(int iWidth, int iHeight, int iDepth)`
`private void`	`CreateImageTextures()`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`CreateRenderTarget(com.jogamp.opengl.GLAutoDrawable arg0, java.lang.String kImageName, int iWidth, int iHeight)`
`private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`CreateRenderTargetInit(com.jogamp.opengl.GLAutoDrawable arg0, java.lang.String kImageName, int iWidth, int iHeight)`
`protected void`	`CreateScene(com.jogamp.opengl.GLAutoDrawable arg0)`
`private void`	`CreateTransformMesh()`
`void`	`display(com.jogamp.opengl.GLAutoDrawable arg0)`
`void`	`dispose()`
`void`	`dispose(com.jogamp.opengl.GLAutoDrawable arg0)`
`float[]`	`getBracketB()`
`com.jogamp.opengl.awt.GLCanvas`	`GetCanvas()`
`double`	`getError()`
`void`	`init(com.jogamp.opengl.GLAutoDrawable arg0)`
`void`	`initImages(ModelSimpleImage kImageA, ModelSimpleImage kImageB, int iNBins)`
`void`	`initLineMin(WildMagic.LibFoundation.Mathematics.Matrix4f kToOrigin, WildMagic.LibFoundation.Mathematics.Matrix4f kFromOrigin, float rigid, float dim, double[] startPoint, double[] pt, int ptLength, double[] unitDirections, double unit_tolerance, double fMinDist, double bracketA, double functionA, double bracketB, double functionB, double bracketC, double functionC)`
`private void`	`printTarget(java.lang.String kMsg, WildMagic.LibGraphics.Rendering.Texture kTarget)`
`private void`	`ReduceDualA(double dNumSamples)`
`void`	`reshape(com.jogamp.opengl.GLAutoDrawable arg0, int iX, int iY, int iWidth, int iHeight)`
`void`	`SetFrame(javax.swing.JFrame kFrame)`
`void`	`setFromOrigin(TransMatrix kFromOrigin)`
`void`	`setToOrigin(TransMatrix kToOrigin)`
`void`	`setTransform(TransMatrix kTransform)`
`void`	`setTransform(TransMatrixd kTransform)`
`boolean`	`writeImage()`

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyPressed, keyReleased, keyTyped, LookDown, LookUp, MeasureTime, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mouseReleased, mouseWheelMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application
reloadShaders, TestStreaming

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

serialVersionUID
```
private static final long serialVersionUID
```
See Also:

Constant Field Values

m_iScreenCaptureCounter

protected static int m_iScreenCaptureCounter

m_akCollapse2D

protected VolumeHistogramEffect m_akCollapse2D

m_akCollapseColumns

protected VolumeHistogramEffect m_akCollapseColumns

m_akCollapseRows

protected VolumeHistogramEffect m_akCollapseRows

m_akImageReduceEntropy

protected ImageReduceEffect m_akImageReduceEntropy

m_kImageEffectDual

protected VolumeHistogramEffect m_kImageEffectDual

m_kImageLineMinPass2a

protected LineMinimizationEffect m_kImageLineMinPass2a

m_kImageLineMinDual

protected LineMinimizationEffect m_kImageLineMinDual

m_kCalcTransform

protected LineMinimizationEffect m_kCalcTransform

m_kImagePointsDual

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kImagePointsDual

m_kHistogramPoints2D

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kHistogramPoints2D

m_kEntropyPoints2D

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kEntropyPoints2D

m_kBracketPoints

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kBracketPoints

m_kTransformPoints

private WildMagic.LibGraphics.SceneGraph.Polypoint m_kTransformPoints

m_kHistogramOutput

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kHistogramOutput

m_kHistogramOutputB

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kHistogramOutputB

m_kEntropyOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kEntropyOut

m_kTransformOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kTransformOut

m_kBracketOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kBracketOut

m_kBracketNewOut

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kBracketNewOut

m_kAlpha

private WildMagic.LibGraphics.Rendering.AlphaState m_kAlpha

m_kImageA
```
private ModelSimpleImage m_kImageA
```

m_kImageB
```
private ModelSimpleImage m_kImageB
```

m_kTarget
```
private ModelSimpleImage m_kTarget
```

m_kMoving
```
private ModelSimpleImage m_kMoving
```

m_kNameA
```
private java.lang.String m_kNameA
```

m_kNameB
```
private java.lang.String m_kNameB
```

m_kTextureA

private WildMagic.LibGraphics.Rendering.Texture m_kTextureA

m_kTextureB

private WildMagic.LibGraphics.Rendering.Texture m_kTextureB

m_dHx
```
private double m_dHx
```

m_dHy
```
private double m_dHy
```

m_dHxy
```
private double m_dHxy
```

m_dOverlap
```
private double m_dOverlap
```

m_kImageTransform

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kImageTransform

m_kImageTransformd

private WildMagic.LibFoundation.Mathematics.Matrix4d m_kImageTransformd

m_kFrame
```
protected javax.swing.JFrame m_kFrame
```

m_fUnitTolerance
```
private float m_fUnitTolerance
```

m_kToOrigin

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kToOrigin

m_kFromOrigin

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kFromOrigin

m_kToOriginInv

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kToOriginInv

m_kFromOriginInv

private WildMagic.LibFoundation.Mathematics.Matrix4f m_kFromOriginInv

m_fRigid
```
private float m_fRigid
```

m_fDim
```
private float m_fDim
```

m_afStartPoint
```
private float[] m_afStartPoint
```

m_afPt
```
private float[] m_afPt
```

m_fPtLength
```
private float m_fPtLength
```

m_afUnitDirections
```
private float[] m_afUnitDirections
```

m_fMinDist
```
private float m_fMinDist
```

m_afBracketB
```
float[] m_afBracketB
```

m_bDisposeComplete
```
private boolean m_bDisposeComplete
```

m_bDispose
```
private boolean m_bDispose
```

m_bDisplay
```
protected boolean m_bDisplay
```

m_bInit
```
protected boolean m_bInit
```

m_bCleanUp
```
private boolean m_bCleanUp
```

m_bStatus
```
private boolean m_bStatus
```

m_bCalcLineMin
```
private boolean m_bCalcLineMin
```

m_afBracket
```
private float[] m_afBracket
```

m_iRenderLoops
```
private int m_iRenderLoops
```

Constructor Detail

ImageRegistrationGPU

public ImageRegistrationGPU(ModelSimpleImage kTarget,
                            ModelSimpleImage kMoving)

Method Detail

create

public static ImageRegistrationGPU create(ModelSimpleImage kTarget,
                                          ModelSimpleImage kMoving)

calcError

public void calcError(TransMatrix kTransform)

calcError

public void calcError(TransMatrixd kTransform)

calcLineMinimization
```
public void calcLineMinimization()
```

checkStatus
```
public boolean checkStatus()
```

convertTo4D

public WildMagic.LibFoundation.Mathematics.Matrix4f convertTo4D(WildMagic.LibFoundation.Mathematics.Matrix4f kTransform)

display

public void display(com.jogamp.opengl.GLAutoDrawable arg0)

dispose
```
public void dispose()
```
Overrides:

dispose in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

dispose

public void dispose(com.jogamp.opengl.GLAutoDrawable arg0)

getBracketB
```
public float[] getBracketB()
```

GetCanvas

public com.jogamp.opengl.awt.GLCanvas GetCanvas()

getError
```
public double getError()
```

init

public void init(com.jogamp.opengl.GLAutoDrawable arg0)

initImages

public void initImages(ModelSimpleImage kImageA,
                       ModelSimpleImage kImageB,
                       int iNBins)

initLineMin

public void initLineMin(WildMagic.LibFoundation.Mathematics.Matrix4f kToOrigin,
                        WildMagic.LibFoundation.Mathematics.Matrix4f kFromOrigin,
                        float rigid,
                        float dim,
                        double[] startPoint,
                        double[] pt,
                        int ptLength,
                        double[] unitDirections,
                        double unit_tolerance,
                        double fMinDist,
                        double bracketA,
                        double functionA,
                        double bracketB,
                        double functionB,
                        double bracketC,
                        double functionC)

reshape

public void reshape(com.jogamp.opengl.GLAutoDrawable arg0,
                    int iX,
                    int iY,
                    int iWidth,
                    int iHeight)

SetFrame

public void SetFrame(javax.swing.JFrame kFrame)

setFromOrigin

public void setFromOrigin(TransMatrix kFromOrigin)

setToOrigin

public void setToOrigin(TransMatrix kToOrigin)

setTransform

public void setTransform(TransMatrix kTransform)

setTransform

public void setTransform(TransMatrixd kTransform)

writeImage
```
public boolean writeImage()
```

CreateBracketMesh
```
protected void CreateBracketMesh()
```

CreateHistogramMesh

protected void CreateHistogramMesh(int iWidth,
                                   int iHeight)

CreateImageMesh

protected WildMagic.LibGraphics.Rendering.ResourceIdentifier CreateImageMesh(int iWidth,
                                                                             int iHeight,
                                                                             int iDepth)

CreateScene

protected void CreateScene(com.jogamp.opengl.GLAutoDrawable arg0)

calcEntropy
```
private void calcEntropy()
```

calcEntropy

private void calcEntropy(ModelSimpleImage kImage,
                         double dNumSamples)

calcLineMin
```
private void calcLineMin()
```

cleanUp
```
private void cleanUp()
```

CreateImageTextures
```
private void CreateImageTextures()
```

CreateRenderTarget

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer CreateRenderTarget(com.jogamp.opengl.GLAutoDrawable arg0,
                                                                                   java.lang.String kImageName,
                                                                                   int iWidth,
                                                                                   int iHeight)

CreateRenderTargetInit

private WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer CreateRenderTargetInit(com.jogamp.opengl.GLAutoDrawable arg0,
                                                                                       java.lang.String kImageName,
                                                                                       int iWidth,
                                                                                       int iHeight)

CreateTransformMesh
```
private void CreateTransformMesh()
```

printTarget

private void printTarget(java.lang.String kMsg,
                         WildMagic.LibGraphics.Rendering.Texture kTarget)

ReduceDualA

private void ReduceDualA(double dNumSamples)

Class ImageRegistrationGPU

Field Summary

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Constructor Summary

Method Summary

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

m_iScreenCaptureCounter

m_akCollapse2D

m_akCollapseColumns

m_akCollapseRows

m_akImageReduceEntropy

m_kImageEffectDual

m_kImageLineMinPass2a

m_kImageLineMinDual

m_kCalcTransform

m_kImagePointsDual

m_kHistogramPoints2D

m_kEntropyPoints2D

m_kBracketPoints

m_kTransformPoints

m_kHistogramOutput

m_kHistogramOutputB

m_kEntropyOut

m_kTransformOut

m_kBracketOut

m_kBracketNewOut

m_kAlpha

m_kImageA

m_kImageB

m_kTarget

m_kMoving

m_kNameA

m_kNameB

m_kTextureA

m_kTextureB

m_dHx

m_dHy

m_dHxy

m_dOverlap

m_kImageTransform

m_kImageTransformd

m_kFrame

m_fUnitTolerance

m_kToOrigin

m_kFromOrigin

m_kToOriginInv

m_kFromOriginInv

m_fRigid

m_fDim

m_afStartPoint

m_afPt

m_fPtLength

m_afUnitDirections

m_fMinDist

m_afBracketB

m_bDisposeComplete

m_bDispose

m_bDisplay

m_bInit

m_bCleanUp

m_bStatus

m_bCalcLineMin

m_afBracket

m_iRenderLoops

Constructor Detail

ImageRegistrationGPU

Method Detail

create

calcError

calcError

calcLineMinimization

checkStatus

convertTo4D

display