Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmInsertVolume

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmInsertVolume
extends AlgorithmBase

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
static int	ADJACENT_BACK	Copy adjacent slice.
static int	ADJACENT_NEXT	Copy adjacent slice.
static int	AVERAGE	Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
static int	BLANK	Blank slice type - the inserted slice is blank.
private float[]	imageBuffer2
static int	INSERTED_IMAGE	Original slice type - a 2D image is inserted.
private ModelImage	insertedImage	Image inserted for slice type == ORIGINAL.
private int	insertSlice	Number of slice before which another slice is inserted.
private int	insertVolumePos
private int	sliceArea	Area of a slice (Xdim * Ydim).
private int	Tdim	Original T dimension of the image.
private int	volumeType
static int	WEIGHTED_AVERAGE	Weighted average slice type.
private float	weightPrevious	For weighted averaging.
private int	Xdim	X dimension of the image.
private int	Ydim	Y dimension of the image.
private int	Zdim	Z dimension of the image.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmInsertVolume(ModelImage srcImage, ModelImage destImage, int volumeType, int insertVolumePos, ModelImage insertedImage)	Import source and destination images into the class.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares this class for destruction.
void	runAlgorithm()	Runs algorithm.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

WEIGHTED_AVERAGE

public static final int WEIGHTED_AVERAGE

Weighted average slice type.

See Also:

Constant Field Values

AVERAGE

public static final int AVERAGE

Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.

See Also:

Constant Field Values

BLANK

public static final int BLANK

Blank slice type - the inserted slice is blank.

See Also:

Constant Field Values

INSERTED_IMAGE

public static final int INSERTED_IMAGE

Original slice type - a 2D image is inserted.

See Also:

Constant Field Values

ADJACENT_BACK

public static final int ADJACENT_BACK

Copy adjacent slice.

See Also:

Constant Field Values

ADJACENT_NEXT

public static final int ADJACENT_NEXT

Copy adjacent slice.

See Also:

Constant Field Values

insertedImage

private ModelImage insertedImage

Image inserted for slice type == ORIGINAL.

insertSlice

private int insertSlice

Number of slice before which another slice is inserted.

Tdim

private int Tdim

Original T dimension of the image.

sliceArea

private int sliceArea

Area of a slice (Xdim * Ydim).

Xdim

private int Xdim

X dimension of the image.

Ydim

private int Ydim

Y dimension of the image.

Zdim

private int Zdim

Z dimension of the image.

volumeType

private int volumeType

insertVolumePos

private int insertVolumePos

weightPrevious

private float weightPrevious

For weighted averaging.

imageBuffer2

private float[] imageBuffer2

Constructor Detail

AlgorithmInsertVolume

public AlgorithmInsertVolume(ModelImage srcImage,
                             ModelImage destImage,
                             int volumeType,
                             int insertVolumePos,
                             ModelImage insertedImage)

Import source and destination images into the class.

Parameters:

srcImage - source image (image to clip from)

destImage - destination image (image to paste to)

volumeType - WEIGHTED_AVERAGE or AVERAGE or BLANK or ADJACENT_BACK or ADJACENT_NEXT

insertVolumePos - position of volume to be inserted

insertedImage - (image designated by user to be inserted)

Method Detail

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Runs algorithm.

Specified by:

runAlgorithm in class AlgorithmBase