java.lang.Object
- gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities

public class RegistrationUtilities
extends java.lang.Object

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class RegistrationUtilities.IndexedFloat

static class RegistrationUtilities.InterpolationType

Constructor Summary

Constructors
Constructor Description

RegistrationUtilities()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static int`	`calculateBin(double interval, double minVal, double val)`
`static int[]`	`calculateBoundingBox(ModelImage sub, ModelImage tar)`
`static void`	`DeformationFieldResample3DM(float[] oldDF, float[] newDF, int oldSizeX, int oldSizeY, int oldSizeZ, int newSizeX, int newSizeY, int newSizeZ)`
`static void`	`DeformImage3D(float[] im, float[] deformedIm, float[] DF, int sizeX, int sizeY, int sizeZ, int type)`
`static void`	`DeformImage3D(ModelImage im, ModelImage deformedIm, float[] DF, int sizeX, int sizeY, int sizeZ, int type)`
`static void`	`DeformImage3D(ModelImage im, ModelImage deformedIm, ModelImage DF, int sizeX, int sizeY, int sizeZ, int type)`
`static double`	`DoubleDistance(double z0, double y0, double x0, double z1, double y1, double x1)`
`static void`	`Histogram3D(float[] im, int numBin, int[] roi, int[] hist, int XN, int YN, int ZN)`
`static void`	`Histogram3D(float[] im, int channel, int numBin, int[] roi, int[][] hist, int XN, int YN, int ZN)`
`static double`	`Interpolation(float[] oldV, int XN, int YN, int ZN, double x, double y, double z, int type)`
`static double`	`Interpolation(float[] oldV, int XN, int YN, int ZN, double x, double y, double z, int c, int type)`
`static double`	`Interpolation(ModelImage oldV, int XN, int YN, int ZN, double x, double y, double z, int type)`
`static void`	`JointHistogram3D(float[] imA, float[] imB, int numBin, int[] roi, int[][] jointHist, int XN, int YN, int ZN)`
`static void`	`JointHistogram3D(float[] imA, float[] imB, int numBin, int[] roi, int[] jointHist, int XN, int YN, int ZN)`
`static void`	`JointHistogram3D(float[] imA, float[] imB, int channel, int numBin, int[] roi, int[][][] jointHist, int XN, int YN, int ZN)`
`static double`	`MI(int[] histA, int[] histB, int[][] histAB, int numBin)`
`static double`	`NMI(int[][] histA, int[][] histB, int[][][] histAB, int channel, int numBin)`
`static double`	`NMI(int[] histA, int[] histB, int[][] histAB, int numBin)`
`static double`	`NMI(int[] histA, int[] histB, int[] histAB, int numBin)`
`static double`	`NNInterpolation(float[] oldV, int XN, int YN, int ZN, double x, double y, double z)`
`static double`	`NNInterpolation(float[] oldV, int XN, int YN, int ZN, double x, double y, double z, int c)`
`static double`	`NNInterpolation(ModelImage oldV, int XN, int YN, int ZN, double x, double y, double z)`
`static boolean`	`NNInterpolationBool(boolean[][][] oldV, int XN, int YN, int ZN, double x, double y, double z)`
`static int[]`	`NNInterpolationLoc(ModelImage oldV, int XN, int YN, int ZN, double x, double y, double z)`
`static int[]`	`QKSort2(float[] arr)`
`static float`	`RBF(float r)`
`static float`	`RBF3D(int cx, int cy, int cz, int x, int y, int z, float scale)`
`static double`	`TrilinearInterpolateDefField(ModelImage defField, int XN, int YN, int ZN, double x, double y, double z, int c)`
`static double`	`TrilinearInterpolation(float[] oldV, int XN, int YN, int ZN, double x, double y, double z)`
`static double`	`TrilinearInterpolation(float[] oldV, int XN, int YN, int ZN, double x, double y, double z, int c)`
`static double`	`TrilinearInterpolation(ModelImage oldV, int XN, int YN, int ZN, double x, double y, double z)`
`static double`	`VectorNormalization(double[] v, int n)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- RegistrationUtilities
```
public RegistrationUtilities()
```

Method Detail

calculateBin

public static int calculateBin(double interval,
                               double minVal,
                               double val)

JointHistogram3D

public static void JointHistogram3D(float[] imA,
                                    float[] imB,
                                    int numBin,
                                    int[] roi,
                                    int[][] jointHist,
                                    int XN,
                                    int YN,
                                    int ZN)

JointHistogram3D

public static void JointHistogram3D(float[] imA,
                                    float[] imB,
                                    int numBin,
                                    int[] roi,
                                    int[] jointHist,
                                    int XN,
                                    int YN,
                                    int ZN)

JointHistogram3D

public static void JointHistogram3D(float[] imA,
                                    float[] imB,
                                    int channel,
                                    int numBin,
                                    int[] roi,
                                    int[][][] jointHist,
                                    int XN,
                                    int YN,
                                    int ZN)

Histogram3D

public static void Histogram3D(float[] im,
                               int numBin,
                               int[] roi,
                               int[] hist,
                               int XN,
                               int YN,
                               int ZN)

Histogram3D

public static void Histogram3D(float[] im,
                               int channel,
                               int numBin,
                               int[] roi,
                               int[][] hist,
                               int XN,
                               int YN,
                               int ZN)

DeformImage3D

public static void DeformImage3D(float[] im,
                                 float[] deformedIm,
                                 float[] DF,
                                 int sizeX,
                                 int sizeY,
                                 int sizeZ,
                                 int type)

DeformImage3D

public static void DeformImage3D(ModelImage im,
                                 ModelImage deformedIm,
                                 float[] DF,
                                 int sizeX,
                                 int sizeY,
                                 int sizeZ,
                                 int type)

DeformImage3D

public static void DeformImage3D(ModelImage im,
                                 ModelImage deformedIm,
                                 ModelImage DF,
                                 int sizeX,
                                 int sizeY,
                                 int sizeZ,
                                 int type)

DeformationFieldResample3DM

public static void DeformationFieldResample3DM(float[] oldDF,
                                               float[] newDF,
                                               int oldSizeX,
                                               int oldSizeY,
                                               int oldSizeZ,
                                               int newSizeX,
                                               int newSizeY,
                                               int newSizeZ)

DoubleDistance

public static double DoubleDistance(double z0,
                                    double y0,
                                    double x0,
                                    double z1,
                                    double y1,
                                    double x1)

RBF
```
public static float RBF(float r)
```

RBF3D

public static float RBF3D(int cx,
                          int cy,
                          int cz,
                          int x,
                          int y,
                          int z,
                          float scale)

Interpolation

public static double Interpolation(float[] oldV,
                                   int XN,
                                   int YN,
                                   int ZN,
                                   double x,
                                   double y,
                                   double z,
                                   int c,
                                   int type)

Interpolation

public static double Interpolation(ModelImage oldV,
                                   int XN,
                                   int YN,
                                   int ZN,
                                   double x,
                                   double y,
                                   double z,
                                   int type)

Interpolation

public static double Interpolation(float[] oldV,
                                   int XN,
                                   int YN,
                                   int ZN,
                                   double x,
                                   double y,
                                   double z,
                                   int type)

NNInterpolation

public static double NNInterpolation(float[] oldV,
                                     int XN,
                                     int YN,
                                     int ZN,
                                     double x,
                                     double y,
                                     double z)

NNInterpolation

public static double NNInterpolation(float[] oldV,
                                     int XN,
                                     int YN,
                                     int ZN,
                                     double x,
                                     double y,
                                     double z,
                                     int c)

NNInterpolationBool

public static boolean NNInterpolationBool(boolean[][][] oldV,
                                          int XN,
                                          int YN,
                                          int ZN,
                                          double x,
                                          double y,
                                          double z)

NNInterpolationLoc

public static int[] NNInterpolationLoc(ModelImage oldV,
                                       int XN,
                                       int YN,
                                       int ZN,
                                       double x,
                                       double y,
                                       double z)

TrilinearInterpolation

public static double TrilinearInterpolation(float[] oldV,
                                            int XN,
                                            int YN,
                                            int ZN,
                                            double x,
                                            double y,
                                            double z)

TrilinearInterpolation

public static double TrilinearInterpolation(float[] oldV,
                                            int XN,
                                            int YN,
                                            int ZN,
                                            double x,
                                            double y,
                                            double z,
                                            int c)

TrilinearInterpolation

public static double TrilinearInterpolation(ModelImage oldV,
                                            int XN,
                                            int YN,
                                            int ZN,
                                            double x,
                                            double y,
                                            double z)

NNInterpolation

public static double NNInterpolation(ModelImage oldV,
                                     int XN,
                                     int YN,
                                     int ZN,
                                     double x,
                                     double y,
                                     double z)

TrilinearInterpolateDefField

public static double TrilinearInterpolateDefField(ModelImage defField,
                                                  int XN,
                                                  int YN,
                                                  int ZN,
                                                  double x,
                                                  double y,
                                                  double z,
                                                  int c)

QKSort2

public static int[] QKSort2(float[] arr)

VectorNormalization

public static double VectorNormalization(double[] v,
                                         int n)

NMI

public static double NMI(int[][] histA,
                         int[][] histB,
                         int[][][] histAB,
                         int channel,
                         int numBin)

NMI

public static double NMI(int[] histA,
                         int[] histB,
                         int[][] histAB,
                         int numBin)

NMI

public static double NMI(int[] histA,
                         int[] histB,
                         int[] histAB,
                         int numBin)

MI

public static double MI(int[] histA,
                        int[] histB,
                        int[][] histAB,
                        int numBin)

calculateBoundingBox

public static int[] calculateBoundingBox(ModelImage sub,
                                         ModelImage tar)

Modifier and Type	Class	Description
`static class`	`RegistrationUtilities.IndexedFloat`
`static class`	`RegistrationUtilities.InterpolationType`

Class RegistrationUtilities

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

RegistrationUtilities

Method Detail

calculateBin

JointHistogram3D

JointHistogram3D

JointHistogram3D

Histogram3D

Histogram3D

DeformImage3D

DeformImage3D

DeformImage3D

DeformationFieldResample3DM

DoubleDistance

RBF

RBF3D

Interpolation

Interpolation

Interpolation

NNInterpolation

NNInterpolation

NNInterpolationBool

NNInterpolationLoc

TrilinearInterpolation

TrilinearInterpolation

TrilinearInterpolation

NNInterpolation

TrilinearInterpolateDefField

QKSort2

VectorNormalization

NMI

NMI

NMI

MI

calculateBoundingBox