Deprecated API

Contents

• Classes
• Fields
• Methods
• Constructors

Deprecated Classes

Class	Description
gov.nih.mipav.view.dialogs.JDialogHistogramLUT
gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase
gov.nih.mipav.view.renderer.JPanelHistoLUT
gov.nih.mipav.view.renderer.JPanelHistoRGB
gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
gov.nih.mipav.view.ViewJFrameHistoLUT
gov.nih.mipav.view.ViewJFrameHistoRGB
gov.nih.mipav.view.ViewJPanelLUT

Deprecated Fields

Field	Description
gov.nih.mipav.model.file.FileInfoBase.conversionSpaceTimeUnits	should use enum conversions
gov.nih.mipav.model.file.FileInfoBase.modalityStr	No longer needed since enum works now
gov.nih.mipav.model.file.FileInfoBase.sUnits
gov.nih.mipav.model.file.FileInfoBase.tUnits
gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase.TAG_LIGHT_SOURCE	use invalid reference com.drew.metadata.exif.ExifDirectoryBase#TAG_WHITE_BALANCE instead.
gov.nih.mipav.model.file.MetadataExtractor.ExifThumbnailDirectory.TAG_THUMBNAIL_COMPRESSION	use invalid reference com.drew.metadata.exif.ExifDirectoryBase#TAG_COMPRESSION instead.
gov.nih.mipav.model.file.MetadataExtractor.GifHeaderDirectory.TAG_TRANSPARENT_COLOR_INDEX	use MetadataExtractor.GifHeaderDirectory.TAG_BACKGROUND_COLOR_INDEX instead.
gov.nih.mipav.model.structures.ModelStorageBase.bufferTypeStr	should use enums directly
gov.nih.mipav.view.ViewJPanelLUT.customLUTsLocation

Deprecated Methods

Method	Description
gov.nih.mipav.model.algorithms.AlgorithmTransform.setPadValue(float)	The value is not just used for padding. Please use setFillValue().
gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction.cost(TransMatrix)	DOCUMENT ME!
gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt.CostFunction.cost(TransMatrixd)	DOCUMENT ME!
gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas.repaint()
gov.nih.mipav.model.file.FileDicomTagTable.getTagList()	See getTagListCopy()
gov.nih.mipav.model.file.FileInfoBase.getAllSameDimUnits(int)	should now use enum
gov.nih.mipav.model.file.FileInfoBase.getUnitsOfMeasureAbbrevStr()	should now use enum
gov.nih.mipav.model.file.FileInfoBase.getUnitsOfMeasureAbbrevStr(int)	should now use enum
gov.nih.mipav.model.file.FileInfoBase.getUnitsOfMeasureFromStr(String)	should now use enum
gov.nih.mipav.model.file.FileInfoBase.getUnitsOfMeasureStr()	should use enum
gov.nih.mipav.model.file.FileInfoBase.getUnitsOfMeasureStr(int)	should now use enum
gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory.getImageHeight()	use MetadataExtractor.JfifDirectory.getResX() instead.
gov.nih.mipav.model.file.MetadataExtractor.JfifDirectory.getImageWidth()	use MetadataExtractor.JfifDirectory.getResY() instead.
gov.nih.mipav.model.structures.ModelImage.getHistoLUTFrame()
gov.nih.mipav.model.structures.ModelImage.getHistoRGBFrame()
gov.nih.mipav.model.structures.ModelImage.getPlane(Vector3f, Vector3f, Vector3f, Vector3f)
gov.nih.mipav.model.structures.ModelImage.getScannerCoordLPS(int, int, int, float[])	see MipavCoordinateSystems.fileToScanner
gov.nih.mipav.model.structures.ModelImage.getScannerCoordRAS(int, int, int, float[])	see MipavCoordinateSystems.fileToScanner
gov.nih.mipav.model.structures.ModelImage.getUserInterface()	DOCUMENT ME!
gov.nih.mipav.model.structures.ModelImage.notifyImageDisplayListeners(boolean, int, ModelRGB)
gov.nih.mipav.model.structures.TransMatrix.readMatrix(RandomAccessFile, int[], float[], float[], float[], int[], int[], int[], boolean[], boolean[], boolean[], boolean)
gov.nih.mipav.model.structures.VOI.fireVOIColorChange(Color)
gov.nih.mipav.model.structures.VOI.removeCurves(int)
gov.nih.mipav.model.structures.VOI.setXYDim(int, int)
gov.nih.mipav.view.dialogs.JDialogInstallPlugin.isImageJPluginClass(Class)	Use PluginUtil methods.
gov.nih.mipav.view.dialogs.JDialogInstallPlugin.isInPluginFolder(Class)	Use PluginUtil method.
gov.nih.mipav.view.dialogs.JDialogInstallPlugin.isInPluginFolder(String)	Use PluginUtil method.
gov.nih.mipav.view.dialogs.JDialogInstallPlugin.isMipavPluginClass(Class)	Use PluginUtil methods.
gov.nih.mipav.view.dialogs.JDialogInstallPlugin.isPluginClass(Class)	Use PluginUtil methods.
gov.nih.mipav.view.dialogs.JDialogOpacityControls.getMainPanel(float)
gov.nih.mipav.view.JPanelAnonymizePrivateTags.addWhiteListedKeys(ArrayList<FileDicomKey>, ArrayList<String>)	invalid reference JPanelAnonymizePanelTags#addKeysToAllowList(ArrayList<FileDicomKey>,ArrayList<String>)
gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView.getLUTDialog()
gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView.getRGBDialog()
gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData.computeImageBytes(float[], ModelRGB, RendererMapColor, JPanelVolOpacityRGB)
gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData.updateRenderer(Renderer, ModelRGB, JPanelVolOpacityRGB, int, boolean, boolean)
gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.InvalidInputDataException.getFilename()	use InvalidInputDataException.getFile() instead
gov.nih.mipav.view.ViewJComponentEditImage.disposeLocal(boolean)	Old method that does not match up with signature from VJCBase.
gov.nih.mipav.view.ViewJFrameGraph.updateFittedFunctions()	If data were changed, this could be useful to refit data without pressing a new button, but this function is not currently utilized. Will be removed in future version of MIPAV unless a use can be found Updates Fitted Functions to accurately estimate the functions in the graph (Function data may have chaned due to realtime updating, and therefore the fitted functions must be updated).
gov.nih.mipav.view.ViewJFrameHistoLUT.createSliderLabel(String)
gov.nih.mipav.view.ViewJFrameImage.updateHistoLUTFrame(int)
gov.nih.mipav.view.ViewJFrameImage.updateHistoLUTFrame(int, ViewJComponentEditImage)
gov.nih.mipav.view.ViewJFrameImage.updateHistoRGBFrame(int)
gov.nih.mipav.view.ViewJFrameImage.updateHistoRGBFrame(int, ViewJComponentEditImage)
gov.nih.mipav.view.ViewJFramePaintVasculature.getImageB()	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.getRGBTB()	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setActiveImage(int)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setAlphaBlend(int)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setImageB(ModelImage)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setPaintBitmapSwitch(boolean)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setRGBTB(ModelRGB)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setSlice(int)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFramePaintVasculature.setTimeSlice(int)	DOCUMENT ME!
gov.nih.mipav.view.ViewJFrameTriImage.updateHistoLUTFrame(int)
gov.nih.mipav.view.ViewJPanelLUT.buildLUTSelectionList(ActionListener)
gov.nih.mipav.view.ViewJPanelLUT.openLUTFile(String)
gov.nih.mipav.view.ViewUserInterface.clearClippedVOIs()
gov.nih.mipav.view.ViewUserInterface.copyClippedVOIs(ViewVOIVector)
gov.nih.mipav.view.ViewUserInterface.getClippedScannerVectors()
gov.nih.mipav.view.ViewUserInterface.getClippedVOIs()
gov.nih.mipav.view.VOIHandlerInterface.deleteSelectedVOI(boolean)
gov.nih.mipav.view.VOIHandlerInterface.getVOI_ID()
gov.nih.mipav.view.VOIHandlerInterface.isNewVoiNeeded(int)
gov.nih.mipav.view.VOIHandlerInterface.propVOI(int, boolean)
gov.nih.mipav.view.VOIHandlerInterface.propVOIAll()
gov.nih.mipav.view.VOIHandlerInterface.selectAllVOIs(boolean)
gov.nih.mipav.view.VOIHandlerInterface.setCenter(Vector3f)
gov.nih.mipav.view.VOIHandlerInterface.setVOI_IDs(int, int)

Deprecated Constructors

Constructor	Description
gov.nih.mipav.model.structures.ModelImage(int, int[], String, ViewUserInterface)	Only one ViewUserInterface should be instantiated for an instance of MIPAV running, so _UI should be ViewUserInterface.getReference()
gov.nih.mipav.view.dialogs.JDialogHistogramLUT(Frame, ModelImage, ModelImage, ModelLUT, ModelLUT)
gov.nih.mipav.view.dialogs.JDialogHistogramLUT(Frame, ModelImage, ModelImage, ModelRGB, ModelRGB)
gov.nih.mipav.view.dialogs.JDialogHistogramLUT(Frame, ViewJComponentRegistration, ModelImage, ModelImage, ModelLUT, ModelLUT)
gov.nih.mipav.view.dialogs.JDialogHistogramLUT(Frame, ViewJComponentRegistration, ModelImage, ModelImage, ModelRGB, ModelRGB)
gov.nih.mipav.view.dialogs.JDialogOpacityControls(Frame, float, boolean)
gov.nih.mipav.view.dialogs.JDialogOpacityControls(Frame, ViewControlsImage, boolean)
gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity(RenderViewBase, ModelImage, ModelImage)
gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity(VolumeTriPlanarInterface, ModelImage, ModelImage)
gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase(RenderViewBase)
gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase(VolumeTriPlanarInterface)
gov.nih.mipav.view.renderer.J3D.ViewJComponentVolOpacity(JPanelVolOpacity, ModelHistogram, ModelImage)
gov.nih.mipav.view.renderer.JPanelHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean)
gov.nih.mipav.view.renderer.JPanelHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean, boolean)
gov.nih.mipav.view.renderer.JPanelHistoRGB(ModelImage, ModelImage, ModelRGB, ModelRGB, boolean)
gov.nih.mipav.view.renderer.JPanelHistoRGB(ModelImage, ModelImage, ModelRGB, ModelRGB, boolean, boolean)
gov.nih.mipav.view.renderer.JPanelHistoRGB(ViewJComponentRegistration, ModelImage, ModelImage, ModelRGB, ModelRGB, boolean)
gov.nih.mipav.view.renderer.JPanelVolOpacityRGB(RenderViewBase, ModelImage, ModelImage)
gov.nih.mipav.view.renderer.JPanelVolOpacityRGB(VolumeTriPlanarInterface, ModelImage, ModelImage)
gov.nih.mipav.view.ViewJFrameHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean)
gov.nih.mipav.view.ViewJFrameHistoLUT(ModelImage, ModelImage, ModelLUT, ModelLUT, boolean, boolean)
gov.nih.mipav.view.ViewJFrameHistoLUT(ViewJComponentRegistration, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean)
gov.nih.mipav.view.ViewJFrameHistoLUT(ViewJFrameColocalizationEM, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean)
gov.nih.mipav.view.ViewJFrameHistoLUT(ViewJFrameColocalizationRegression, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean)
gov.nih.mipav.view.ViewJFrameHistoLUT(Frame, ModelImage, ModelImage, ModelLUT, ModelLUT, boolean)
gov.nih.mipav.view.ViewJFrameHistoRGB(ModelImage, ModelImage, ModelRGB, ModelRGB, boolean)
gov.nih.mipav.view.ViewJFrameHistoRGB(ViewJComponentRegistration, ModelImage, ModelImage, ModelRGB, ModelRGB, boolean)
gov.nih.mipav.view.ViewJPanelHistoLUT(HistoLUTParent, ModelImage, ModelLUT, ModelHistogram)
gov.nih.mipav.view.ViewJPanelHistoLUT(HistoLUTParent, ModelImage, ModelRGB, ModelHistogram)
gov.nih.mipav.view.ViewJPanelLUT(ViewJFrameHistoLUT)