Package gov.nih.mipav.view

The gov.nih.mipav.view package contains Objects which are displayed on the screen. The screen elements include various user-interaction dialogs, frames and the image elements themselves.

The derivations of each items are keyed as a part of the names themselves; for instance ViewJFrameImage is a class for images and extends ViewJFrameBase.

Interface Summary

Interface	Description
Argument
CommandLineParser	A MIPAV command line parser reads the arguments provided to MIPAV at the command line.
CoordinateChangeListener	This interface identifies a class which wants to know about changes to the current coordinates of another frame (such as ViewJFrameTriImage).
DialogDefaultsInterface	Simple interface for loading and saving default settings for dialogs.
FileSelector	The FileSelector interface defines the interface for file selector which is used to select files.
HistoLUTParent	Common interface for swing containers which hold a HistoLUT component so that the image frames and thresholding text areas can be updated correctly.
PaintGrowListener	Interface to allow different types of ViewJComponents* to work with region grow dialogs.
PreviewImageContainer	Title: PreviewImageContainer
ProgressBarInterface	Title: ProgressBarInterface
ProgressChangeListener	Defines an object which listens for the ProgressChangeEvent.
ViewImageUpdateInterface	Interface to update display of an image.
ViewOpenFrameInterface	Simple interface to allow JDialogs to open up a new frame of the same type as was used to create the dialog This allows stand-alone plugins that extend ViewJFrameImage to instantiate a new frame of the same type.
VOIHandlerInterface	VOIHandlerInterface.

Class Summary

Class	Description
AlternatingTableCellRenderer	Title: AlternatingTableCellRenderer
BarMeter	BarMeter presents a vertical, block-style meter to present numerical information as a fraction of a number of divisions (eg, progress or resource consumption).
BorderedButton	This class was created for use in the JDialogMultiPaint class.
CheckTreeManager
ColorIcon	This is an icon which is a block of color with bounds specified in the constructor.
ColorWheel
CustomUIBuilder
CustomUIBuilder.UIParams	Class that holds the parameters for creating/catching common buttons and menu items
DICOMDisplayer	This class is simply a table that goes in the query GUI and displays progress and error messages.
FileSelectorImpl	The implementation of the FileSelector interface for the local file system, for the remote file system you should have different implementation, basically this class is a wrapper of the JFileChooser.
GetPath	This is a static helper class for finding the path to a number of important files to the MIPAV application.
ImageRegistryMonitor	Tracks registered images, and notifies anybody who is interested in finding out about them.
JFrameHistogram	Lookup table interface for either grayscale or color (RGB) images.
JPanelAnonymizeImage	Custom panel for anonymizing DICOM images.
JPanelAnonymizePrivateTags	The panel class used in anonymize image/directory that displays the private tags in a tree format along with check boxes so that the organization between groups is apparent.
JPanelAnonymizePublicTags	The panel class used in anonymize image/directory that displays the public tags in a tree format along with check boxes so that the organization between groups is apparent.
JPanelChecklist	Creates a JPanel to hold a scrolling list of checkboxes.
JPanelEdit	An abstract class for editing a single, specfic value.
JPanelEditAxisOrientation	An EditPanel which allows the user to select among the Analyze possibilities for image orientation.
JPanelEditBoolean	An EditPanel which allows the user to select a boolean value ('true' or 'false').
JPanelEditChar	Very simple EditPanel which merely edit a letter at a time.
JPanelEditDate	panel contains 3 fields: 2 comboboxes (day, month), 1 text field (year), panel handles proper day/month and leap-year input.
JPanelEditDefault	Very simple EditPanel which merely contains some text.
JPanelEditImageOrientation	An EditPanel which allows the user to select among the Analyze possibilities for image orientation.
JPanelEditModality	An EditPanel which allows the user to select from a list of modalities (from FileInfoBase.modalityStr).
JPanelEditOrientation	An EditPanel which allows the user to select among the Analyze possibilities for image orientation.
JPanelEditRace	An EditPanel which allows the user to select from a list of races.
JPanelEditSetOrParam	Very simple EditPanel which merely contains some text.
JPanelEditSex	adds panel with combobox to change field containing the patient's sex.
JPanelEditTime	panel contains 4 fields: 3 comboboxes (hour, minute, second), 1 text field (decimal fraction of a second),
JPanelEditValueType	An EditPanel which allows the user to select from a list of parameter value types.
JPanelFileSelection	provides a nice plug-in swing panel to simplify the file-selection process.
JPanelHistogram
JPanelListController	panel to hold and transfer items between two lists. extend to modify the application of the 'left', 'right', and 'delete' or 'up', 'down' and 'delete'.
JPanelProgressBar	Title: JPanelProgressBar
JPanelStatisticsList	Custom panel for placing statistics in a selectable checklist panel.
JPanelTreeController	panel to hold and transfer items between two trees. extend to modify the application of the 'left', 'right', and 'delete' or 'up', 'down' and 'delete'.
JPanelVolumeOpacity	Simple panel containing the volume renderer opacity controls.
JScrollMenu
JScrollPopupMenu
JScrollPopupMenu.ScrollPopupMenuLayout
JTreeDICOM
LineMeter	LineMeter is a history-graph panel which updates its display once a second, drawing a curve of the history of inputs to setAmplitude().
LogStdStreams	Title:
MaximumLinesDocumentListener
MIPAVTableCellRenderer	Title: MIPAVTableCellRenderer
MipavUtil	A collection of static methods and frequently used and useful constants are in this utility class.
MipavUtil.ActionAdapter	Static abstract class similar to mouseAdapter to allow the catching of actionevents from components without having to implement ActionListener.
PatientSlice	PatientSlice provides oriented or non-oriented interface to the ModelImage data for rendering, with LUT changes.
Preferences	This class reads the MIPAV preference file.
Preferences.LogConfig
ProgressChangeEvent	ProgressChangeEvent is used to notify interested parties that progress state has changed in the event source
Rubberband	An abstract base class for rubberbands.
RubberbandEllipse	A Rubberband that does ellipses.
RubberbandLine	A Rubberband that does lines.
RubberbandLivewire	A Livewire rubberband.
RubberbandPolyline	A Rubberband that does polylines and polygons.
RubberbandProtractor	A Rubberband that does protractors.
RubberbandRectangle	A Rubberband that does rectangles.
RubberbandRectangleVOI	A Rubberband that does rectangles.
ScrollCorrector	Corrects a strange behaviour with JScrollPane when lines are appended from another thread.
ShortCutted	DOCUMENT ME!
ViewControlsImage	This class builds the control panel used in ViewJFrameImage frames.
ViewDICOMDoubleListPanel	DOCUMENT ME!
ViewDirectoryChooser	THIS CLASS IS MOST LIKELY TO BE DESTROYED!!!!!!!!!!
ViewFileChooserBase	Encapsulates a JFileChooser with MIPAV related components.
ViewFileChooserSubsample	DOCUMENT ME!
ViewFileTreeNode	This class is used to represent a file system in a tree.
ViewImageDirectory	Tree of images beneath the given directory.
ViewImageFileFilter	A simple file filter to display only files with the appropriate extension in the file dialog.
ViewJColorChooser	This is a color chooser designed so that the preview panel is not shown.
ViewJComponentAnimate	DOCUMENT ME!
ViewJComponentAnimateClip	DOCUMENT ME!
ViewJComponentBase	Abstract class used for displaying images in the program MIPAV.
ViewJComponentColocalizationEM	DOCUMENT ME!
ViewJComponentColocalizationRegression	DOCUMENT ME!
ViewJComponentDTIImage	ViewJComponent DTI Image
ViewJComponentEditImage	Basic displayable image object in MIPAV.
ViewJComponentFunct	This is a custom made Swing component.
ViewJComponentGraph	This is a custom made Swing component.
ViewJComponentGraphAxes
ViewJComponentHistoLUT	This class extends the ViewJComponentHLUTBase class and used to coordinate how a histogram and LUT for an image are to be displayed to the screen.
ViewJComponentHistoRGB	This class extends the ViewJComponentHLUTBase class and used to coordinate how a histogram and LUT for an image are to be displayed to the screen.
ViewJComponentHLUTBase	Abstract class used for generating custom components, especially within images.
ViewJComponentLUT	Component LUT - the vertical or horizontal bar that gives a visual representation of the lookup table.
ViewJComponentLUTTable	Component LUT - the vertical or horizontal bar that gives a visual representation of the lookup table.
ViewJComponentPedsAtlasIconImage
ViewJComponentPreviewImage	Preview image displayed when the user clicks on an image file in the directory tree.
ViewJComponentRegistration	DOCUMENT ME!
ViewJComponentSingleRegistration	Extended version of ViewJComponentEditImage, used ONLY within the ViewJFrameRegistrationTool This class is tailored to support Reference and Adjusted markers for use with Least Squares and Thin Plate Splines registration operations.
ViewJComponentTriImage	One of the component images that make up the triplanar view (AXIAL, SAGITTAL, and CORONAL views).
ViewJFilterAnimate	DOCUMENT ME!
ViewJFrameAnimate	This class produces a frame surrounding an image whose slices are animated.
ViewJFrameAnimateClip	This class produces a frame surrounding an image whose slices are animated.
ViewJFrameBase	This is an abstract class used to display images in a 2D planar format.
ViewJFrameColocalizationEM	This class produces a frame surrounding a 2D histogram with ellipses surrounding the most prominent clusters.
ViewJFrameColocalizationRegression	This class produces a frame surrounding a 2D histogram with a orthogonal least squares regression line and a threshold point that slides along the line.
ViewJFrameCreatePaint	Frame that allows the creation of custom paint brushes.
ViewJFrameDICOMParser	DICOM parser - shows pertinent DICOM tags, allows user to sort on specific values in the tags and open the proper images.
ViewJFrameDICOMQuery	GUI for DICOM Query and retreival from DICOM compliant servers.
ViewJFrameFastMarching2	DOCUMENT ME!
ViewJFrameFastMarching3	DOCUMENT ME!
ViewJFrameGraph	This is a frame which holds a graph in one panel and a set of user buttons in the other.
ViewJFrameHistoLUT	Deprecated.
ViewJFrameHistoRGB	Deprecated.
ViewJFrameImage	Makes a frame and put a single image component into it.
ViewJFrameLightBox	This class builds a "light box" view of a 3D or 4D dataset.
ViewJFrameMemory	Contains a seperatly running thread which checks the currently used and available memory.
ViewJFrameMessage	This class produces a message frame where user data, logging and debug information can be displayed.
ViewJFrameMessage.ScrollTextArea	DOCUMENT ME!
ViewJFrameMessageGraph	This class produces a message frame where user data and program can be displayed.
ViewJFrameMultimodalitySingleViewer
ViewJFrameMultimodalityViewer
ViewJFramePaintVasculature	Generates a MIP image from a 3D volume.
ViewJFrameRegisteredImages	Contains a seperatly running thread which checks the list of registered images.
ViewJFrameRegistration	ViewJFrameRegistration is called in ViewJFrameImage.
ViewJFrameRegistrationTool	ViewJFrameRegistrationTool is called in ViewJFrameImage.
ViewJFrameTriImage	This program works with 3D and 4D images.
ViewJPanelHistoLUT	Panel containing the histogram component (the graph) and the lut component (the gradient vertical bar).
ViewJPanelLUT	Deprecated.
ViewJPopupPlugin	Pop-up menu for uninstalling a plugin.
ViewJPopupPt	DOCUMENT ME!
ViewJPopupVOI	DOCUMENT ME!
ViewJProgressBar	Progress bar used everywhere for displaying to the user how long the current process is going to take.
ViewJProgressBarMulti	Extension of ViewJProgressBar, ViewJProgressBarMulti is used to keep track of multiple algorithms or threads at a single time.
ViewJSlider	This class extends Java's JSlider to give basic solutions to common slider needs in image processing tasks.
ViewMenuBar	Build the menus for an image loaded into MIPAV.
ViewMenuBuilder	This class provides a number of helper methods for building and manipulating menus.
ViewOpenFileUI	Opens an image file by calling FileIO.readImage and puts it into an image frame.
ViewOpenImageSequence	The purpose of this class is to present the user with a window enabling him/her to open a sequence of TIFF files based on timepoint-channel-slice ordering.
ViewOpenPaintUI
ViewOpenVOIUI	User interface to open a VOI.
ViewSelectableDoubleListPanel	DOCUMENT ME!
ViewSplashScreen	Shows the MIPAV splash screen until the user clicks the image or a few seconds (4 currently).
ViewTableModel	This is a simple class that creates a DefaultTableModel with uneditable cells.
ViewToolBarBuilder	Builds the GUI toolbars for the user interface.
ViewUserInterface	This class is the _glue_ keeps a record of the present structure of the application.
ViewVOIVector	A simple class that extends Vector mostly to clean-up syntax access to VOI info. in ViewComponentEditImage ((VOI)(VOIs.elementAt(i))).isActive() would be a good example can be re-written as as: VOIs.VOIAt(i).isActive()
VOIContourNode	This class is used to represent a contour node in a tree.
VOIFrameNode	This class is used to represent a frame, such as a slice number.
VOIGroupNode	This class is used to represent a VOI in a tree.
VOIGroupTree	wrapper class for JTree.
VOIOrientationNode	This class is used to represent the orientation of a set of VOI curves.
VolumePositionFrame	VolumePositionFrame, used by the ViewJFrameTriImage class to display the volume position data.
WindowLevel	The WindowLevel class provides mouse-driven window-level controls for the ModelLUT or ModelRGB lookup tables.

Enum Summary

Enum	Description
Argument.InstanceArgument
Argument.StaticArgument
GetPath.Purpose
Preferences.ComplexDisplay	Defines options for displaying pixel values of complex images.
Preferences.DefaultDisplay	Defines options for defining color and brightness display based on pixel values.
Preferences.InterpolateDisplay	Defines options for interpolating displayed image slices.
Preferences.LogLevel
Preferences.OperatingSystem	Defines operating system on which MIPAV is running.
Preferences.SystemArchitecture	Defines system architecture on which MIPAV is running.
ViewJFrameGraph.FitMode
ViewJSlider.SliderType