Class ViewJComponentDTIImage

All Implemented Interfaces:
PaintGrowListener, ScreenCoordinateListener, MouseListener, MouseMotionListener, MouseWheelListener, ImageObserver, MenuContainer, Serializable, EventListener

public class ViewJComponentDTIImage extends ViewJComponentEditImage
ViewJComponent DTI Image
Author:
pandyan References: Developed in concert with Sinisa Pajevic from the NIH/CIT/DCB/MSCL group, Lin-Ching Chang D.Sc., Carlo Pierpaoli MD Ph.D., and Lindsay Walker MS from the the NIH/NICHD/LIMB/STBB group and Olga Vovk from the NIH/CIT/DCB/ISL/BIRSS group: Mathematical and Statistical Computing Laboratory (MSCL) Biomedical Imaging Research Services Section (BIRSS) Imaging Sciences Laboratory (ISL) Division of Cumputational Bioscience (DCB) Center for Informational Technology (CIT) Section on Tissue Biophysics and Biomimetics (STBB) Laboratory of Integrative and Medical Biophysics (LIMB) National Institute of Child Health invalid input: '&' Humann Development National Institutes of Health Publication Reference: S. Pajevic and C. Pierpaoli, "Color Schemes to Represent the Orientation of Anisotropic Tissues from Diffusion Tensor Data: Application to White Matter Fiber Tract Mapping in the Human Brain," Magnetic Resonance in Medicine, vol. 42, no. 3, pp. 526-540, 1999
See Also:
  • Field Details

    • type

      private String type
      type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *
    • imageA

      private ModelImage imageA
      model image *
    • pS

      private float pS
      sat vs theta *
    • pC

      private float pC
      color range *
    • pB

      private float pB
      blue saturation *
    • pG

      private float pG
      green adj *
    • gamma

      private float gamma
      gamma correction *
    • twoPi

      private float twoPi
      two pi *
    • piDivTwo

      private float piDivTwo
      pi div two *
    • blueShiftColors

      private float[] blueShiftColors
      arry of r,g,b after blue shift *
    • redShiftColors

      private float[] redShiftColors
      array of r,g,b values after red shifting *
    • greenAdjColors

      private float[] greenAdjColors
      arry of r,g,b after green adj *
    • anisotropyMax

      private float anisotropyMax
      anisotropy max *
    • anisotropyMin

      private float anisotropyMin
      anisotropy min *
    • anisotropyBuffer

      private float[] anisotropyBuffer
      anisotropy file data buffer *
    • clippedBuffer

      private float[] clippedBuffer
      anisotropy file data buffer *
    • stevensBeta

      private float stevensBeta
      Stevens Beta *
    • adjustExp

      private float adjustExp
      adjust exp *
    • isMultiply

      private boolean isMultiply
      boolean for truncate/multiply *
    • truncMultColors

      private float[] truncMultColors
      arry of r,g,b after scaling/truncating *
  • Constructor Details

    • ViewJComponentDTIImage

      public ViewJComponentDTIImage(ViewJFrameBase _frame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, float[] anisotropyBuffer)
      constructor
      Parameters:
      _frame -
      _imageA -
      _LUTa -
      imgBufferA -
      pixelBuffer -
      zoom -
      extents -
      logMagDisplay -
      _orientation -
  • Method Details

    • show

      public boolean show(int tSlice, int zSlice, boolean forceShow, String type, float pS, float pB, float pC, float pG, float gamma, float anisotropyMin, float anisotropyMax, float stevensBeta, float adjustExp, boolean isMultiply)
      For generating the display of 1 or 2 images.
      Parameters:
      tSlice - t (time) slice to show
      zSlice - z slice to show
      forceShow - forces this method to import image and recalculate java image
      Returns:
      boolean to indicate if the show was successful
    • show

      public boolean show(int tSlice, int zSlice, ModelLUT _LUTa, ModelLUT _LUTb, boolean forceShow, int interpMode)
      Shows the image and the VOI(s).
      Overrides:
      show in class ViewJComponentEditImage
      Parameters:
      tSlice - t (time) slice to show
      zSlice - z slice to show
      _LUTa - LUTa - to change to new LUT for imageA else null
      _LUTb - LUTb - to change to new LUT for imageB else null
      forceShow - forces this method to import image and recalculate java image
      interpMode - image interpolation method (Nearest or Smooth)
      Returns:
      boolean to indicate if the show was successful
    • absoluteValue

      public void absoluteValue(int zSlice, float[] buff)
      absolute value
      Parameters:
      zSlice -
      buff -
    • noSymm

      public void noSymm(int zSlice, float[] buff)
      no symmetry
      Parameters:
      zSlice -
      buff -
    • rotationalSymm

      public void rotationalSymm(int zSlice, float[] buff)
      rotationsl symmetry
      Parameters:
      zSlice -
      buff -
    • mirrorSymm

      public void mirrorSymm(int zSlice, float[] buff)
      mirror symmetry
      Parameters:
      zSlice -
      buff -
    • clipAnisotropyBuffer

      public void clipAnisotropyBuffer()
      clipAnisotropyBuffer
    • truncateRGB

      public float[] truncateRGB(float r1, float g1, float b1, float scale)
      truncat RGB based on heuristic parameters
      Parameters:
      r1 -
      g1 -
      b1 -
      scale -
      Returns:
    • shiftBlue

      public float[] shiftBlue(float r1, float g1, float b1)
      blue shift
      Parameters:
      r1 -
      g1 -
      b1 -
      Returns:
    • shiftRed

      public float[] shiftRed(float r1, float g1, float b1)
      red shift
      Parameters:
      r1 -
      g1 -
      b1 -
      Returns:
    • adjustGreen

      public float[] adjustGreen(float r1, float g1, float b1)
      adjust green intensity
      Parameters:
      r1 -
      g1 -
      b1 -
      Returns:
    • mouseClicked

      public void mouseClicked(MouseEvent mouseEvent)
      mouse clicked
      Specified by:
      mouseClicked in interface MouseListener
      Overrides:
      mouseClicked in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event that triggers function; contains click count
    • mouseDragged

      public void mouseDragged(MouseEvent mouseEvent)
      mouse dragged
      Specified by:
      mouseDragged in interface MouseMotionListener
      Overrides:
      mouseDragged in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event that triggered function
    • mouseEntered

      public void mouseEntered(MouseEvent mouseEvent)
      mouse entered
      Specified by:
      mouseEntered in interface MouseListener
      Overrides:
      mouseEntered in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event
    • mouseExited

      public void mouseExited(MouseEvent mouseEvent)
      mouse exited
      Specified by:
      mouseExited in interface MouseListener
      Overrides:
      mouseExited in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event that triggered function
    • mouseMoved

      public void mouseMoved(MouseEvent mouseEvent)
      mouse moved
      Specified by:
      mouseMoved in interface MouseMotionListener
      Overrides:
      mouseMoved in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event that triggered the function
    • mousePressed

      public void mousePressed(MouseEvent mouseEvent)
      mouse pressed
      Specified by:
      mousePressed in interface MouseListener
      Overrides:
      mousePressed in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event that triggered function
    • mousePressedPaint

      protected void mousePressedPaint(MouseEvent mouseEvent)
      mouse pressed paint
      Overrides:
      mousePressedPaint in class ViewJComponentEditImage
      Parameters:
      mouseEvent - the mouseEvent that triggered this function call.
    • mouseReleased

      public void mouseReleased(MouseEvent mouseEvent)
      mouse released
      Specified by:
      mouseReleased in interface MouseListener
      Overrides:
      mouseReleased in class ViewJComponentEditImage
      Parameters:
      mouseEvent - event that triggered function
    • mouseWheelMoved

      public void mouseWheelMoved(MouseWheelEvent mouseWheelEvent)
      mouse wheel moved
      Specified by:
      mouseWheelMoved in interface MouseWheelListener
      Overrides:
      mouseWheelMoved in class ViewJComponentEditImage
      Parameters:
      mouseWheelEvent - DOCUMENT ME!