java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogStandardDeviationThreshold
extends JDialogScriptableBase
implements AlgorithmInterface
```
The Standard Deviation Threshold works by first having an active VOI in which the standard deviation and other statistics are calculated. The dialog allows the user to enter the number of standard deviations and the values outside the range for the thersholding process. The theresholding can be done on the whole image or alternatively, on other VOIS that are not active that might be on the image. The destination can either be a new image or paint in existing image except if the src image is a color image.

Author:

pandyan

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private AlgorithmStandardDeviationThreshold`	`alg`	handle to algorithm
`private AlgorithmVOIProps`	`algoVOI`	handle to algorithm
`private float`	`avgIntensity`	average intensities in VOI
`private float`	`avgIntensityB`	average intensities in VOI
`private float`	`avgIntensityG`	average intensities in VOI
`private float`	`avgIntensityR`	average intensities in VOI
`private javax.swing.JPanel`	`destinationPanel`	panels
`private javax.swing.ButtonGroup`	`destinationRadioGroup`	radio groups
`private int`	`groupNum`	number for id of VOI
`private boolean`	`inverseThreshold`	boolean for inverse threshold
`private javax.swing.JCheckBox`	`inverseThresholdCheckBox`	checkbox for inverse threshold
`private boolean`	`isColorImage`	boolean for color image
`private javax.swing.JPanel`	`mainPanel`	panels
`private float`	`maxIntensity`	max intensities calculatd using std dev
`private float`	`maxIntensityB`	max intensities calculatd using std dev
`private float`	`maxIntensityG`	max intensities calculatd using std dev
`private float`	`maxIntensityR`	max intensities calculatd using std dev
`private float`	`minIntensity`	min intensities calculatd using std dev
`private float`	`minIntensityB`	min intensities calculatd using std dev
`private float`	`minIntensityG`	min intensities calculatd using std dev
`private float`	`minIntensityR`	min intensities calculatd using std dev
`private boolean`	`newImageDestination`	flags for destination and threshold
`private javax.swing.JRadioButton`	`newImageRadio`	radio buttons
`private int`	`numPixels`
`private float`	`numStdDev`	number of standard deviations used in thresholding
`private float`	`numStdDevB`	number of standard deviations used in thresholding
`private float`	`numStdDevG`	number of standard deviations used in thresholding
`private float`	`numStdDevR`	number of standard deviations used in thresholding
`private double`	`outMax`	image type max
`private double`	`outMin`	image type min
`private javax.swing.JRadioButton`	`paintRadio`	radio buttons
`private ModelImage`	`resultImage`	src image, result image
`private boolean`	`scriptFail`	boolean telling if script failed
`private javax.swing.JCheckBox`	`setMaxThresholdCheckBox`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMaxThresholdCheckBoxB`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMaxThresholdCheckBoxG`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMaxThresholdCheckBoxR`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMinThresholdCheckBox`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMinThresholdCheckBoxB`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMinThresholdCheckBoxG`	checkbox for inverse threshold
`private javax.swing.JCheckBox`	`setMinThresholdCheckBoxR`	checkbox for inverse threshold
`private ModelImage`	`srcImage`	src image, result image
`private VOI`	`srcVOI`	src VOI used for thresholding ME!
`private float`	`stdDev`	standard deviations in VOI
`private float`	`stdDevB`	standard deviations in VOI
`private float`	`stdDevG`	standard deviations in VOI
`private float`	`stdDevR`	standard deviations in VOI
`private javax.swing.JTextField`	`stdDevTextField`	text fields
`private javax.swing.JTextField`	`stdDevTextFieldB`	text fields
`private javax.swing.JTextField`	`stdDevTextFieldG`	text fields
`private javax.swing.JTextField`	`stdDevTextFieldR`	text fields
`(package private) double`	`sumPixelInten`
`(package private) double`	`sumPixelIntenB`
`(package private) double`	`sumPixelIntenG`
`(package private) double`	`sumPixelIntenR`
`private javax.swing.JPanel`	`thresholdPanel`	panels
`private javax.swing.JPanel`	`thresholdParametersLeftPanel`	panels
`private javax.swing.JPanel`	`thresholdParametersPanel`	panels
`private javax.swing.JPanel`	`thresholdParametersRightPanel`	panels
`private javax.swing.ButtonGroup`	`thresholdRadioGroup`	radio groups
`private ViewUserInterface`	`UI`	handle to UI
`private float`	`valuesOutside`	intensity values to be used in thresholding
`private float`	`valuesOutsideB`	intensity values to be used in thresholding
`private float`	`valuesOutsideG`	intensity values to be used in thresholding
`private float`	`valuesOutsideR`	intensity values to be used in thresholding
`private javax.swing.JTextField`	`valuesOutsideTextField`	text fields
`private javax.swing.JTextField`	`valuesOutsideTextFieldB`	text fields
`private javax.swing.JTextField`	`valuesOutsideTextFieldG`	text fields
`private javax.swing.JTextField`	`valuesOutsideTextFieldR`	text fields
`private javax.swing.JRadioButton`	`voiRegionsRadio`	radio buttons
`private ViewVOIVector`	`VOIs`	vois in image
`private javax.swing.JPanel`	`voiStatsLeftPanel`	panels
`private javax.swing.JPanel`	`voiStatsPanel`	panels
`private javax.swing.JPanel`	`voiStatsRightPanel`	panels
`private javax.swing.JRadioButton`	`wholeImageRadio`	radio buttons
`private boolean`	`wholeImageThreshold`	flags for destination and threshold

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogStandardDeviationThreshold()`	empty constructor
`JDialogStandardDeviationThreshold(java.awt.Frame theParentFrame, ModelImage im)`	constructor

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	action performed
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	algorithm performed
`protected void`	`callAlgorithm()`	call algorithm
`private ViewVOIVector`	`getActiveVOIs(ModelImage srcImage)`	This legacy code returns all active vois for a given source image.
`private java.lang.String`	`getRangeString(int imageType)`
`void`	`init()`	init
`protected void`	`setGUIFromParams()`	set gui from params
`private void`	`setOutMinAndMax(int imageType)`	sets out min and max...used in scripting
`protected void`	`storeParamsFromGUI()`	store params
`boolean`	`validateParams()`	validate params

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - srcImage
```
private ModelImage srcImage
```
    src image, result image
  - resultImage
```
private ModelImage resultImage
```
    src image, result image
  - VOIs
```
private ViewVOIVector VOIs
```
    vois in image
  - groupNum
```
private int groupNum
```
    number for id of VOI
  - srcVOI
```
private VOI srcVOI
```
    src VOI used for thresholding ME!
  - algoVOI
```
private AlgorithmVOIProps algoVOI
```
    handle to algorithm
  - UI
```
private ViewUserInterface UI
```
    handle to UI
  - mainPanel
```
private javax.swing.JPanel mainPanel
```
    panels
  - voiStatsPanel
```
private javax.swing.JPanel voiStatsPanel
```
    panels
  - voiStatsLeftPanel
```
private javax.swing.JPanel voiStatsLeftPanel
```
    panels
  - voiStatsRightPanel
```
private javax.swing.JPanel voiStatsRightPanel
```
    panels
  - thresholdParametersPanel
```
private javax.swing.JPanel thresholdParametersPanel
```
    panels
  - thresholdParametersLeftPanel
```
private javax.swing.JPanel thresholdParametersLeftPanel
```
    panels
  - thresholdParametersRightPanel
```
private javax.swing.JPanel thresholdParametersRightPanel
```
    panels
  - destinationPanel
```
private javax.swing.JPanel destinationPanel
```
    panels
  - thresholdPanel
```
private javax.swing.JPanel thresholdPanel
```
    panels
  - stdDevTextField
```
private javax.swing.JTextField stdDevTextField
```
    text fields
  - stdDevTextFieldR
```
private javax.swing.JTextField stdDevTextFieldR
```
    text fields
  - stdDevTextFieldG
```
private javax.swing.JTextField stdDevTextFieldG
```
    text fields
  - stdDevTextFieldB
```
private javax.swing.JTextField stdDevTextFieldB
```
    text fields
  - valuesOutsideTextField
```
private javax.swing.JTextField valuesOutsideTextField
```
    text fields
  - valuesOutsideTextFieldR
```
private javax.swing.JTextField valuesOutsideTextFieldR
```
    text fields
  - valuesOutsideTextFieldG
```
private javax.swing.JTextField valuesOutsideTextFieldG
```
    text fields
  - valuesOutsideTextFieldB
```
private javax.swing.JTextField valuesOutsideTextFieldB
```
    text fields
  - inverseThresholdCheckBox
```
private javax.swing.JCheckBox inverseThresholdCheckBox
```
    checkbox for inverse threshold
  - setMinThresholdCheckBox
```
private javax.swing.JCheckBox setMinThresholdCheckBox
```
    checkbox for inverse threshold
  - setMinThresholdCheckBoxR
```
private javax.swing.JCheckBox setMinThresholdCheckBoxR
```
    checkbox for inverse threshold
  - setMinThresholdCheckBoxG
```
private javax.swing.JCheckBox setMinThresholdCheckBoxG
```
    checkbox for inverse threshold
  - setMinThresholdCheckBoxB
```
private javax.swing.JCheckBox setMinThresholdCheckBoxB
```
    checkbox for inverse threshold
  - setMaxThresholdCheckBox
```
private javax.swing.JCheckBox setMaxThresholdCheckBox
```
    checkbox for inverse threshold
  - setMaxThresholdCheckBoxR
```
private javax.swing.JCheckBox setMaxThresholdCheckBoxR
```
    checkbox for inverse threshold
  - setMaxThresholdCheckBoxG
```
private javax.swing.JCheckBox setMaxThresholdCheckBoxG
```
    checkbox for inverse threshold
  - setMaxThresholdCheckBoxB
```
private javax.swing.JCheckBox setMaxThresholdCheckBoxB
```
    checkbox for inverse threshold
  - maxIntensity
```
private float maxIntensity
```
    max intensities calculatd using std dev
  - maxIntensityR
```
private float maxIntensityR
```
    max intensities calculatd using std dev
  - maxIntensityG
```
private float maxIntensityG
```
    max intensities calculatd using std dev
  - maxIntensityB
```
private float maxIntensityB
```
    max intensities calculatd using std dev
  - minIntensity
```
private float minIntensity
```
    min intensities calculatd using std dev
  - minIntensityR
```
private float minIntensityR
```
    min intensities calculatd using std dev
  - minIntensityG
```
private float minIntensityG
```
    min intensities calculatd using std dev
  - minIntensityB
```
private float minIntensityB
```
    min intensities calculatd using std dev
  - avgIntensity
```
private float avgIntensity
```
    average intensities in VOI
  - avgIntensityR
```
private float avgIntensityR
```
    average intensities in VOI
  - avgIntensityG
```
private float avgIntensityG
```
    average intensities in VOI
  - avgIntensityB
```
private float avgIntensityB
```
    average intensities in VOI
  - stdDev
```
private float stdDev
```
    standard deviations in VOI
  - stdDevR
```
private float stdDevR
```
    standard deviations in VOI
  - stdDevG
```
private float stdDevG
```
    standard deviations in VOI
  - stdDevB
```
private float stdDevB
```
    standard deviations in VOI
  - numStdDev
```
private float numStdDev
```
    number of standard deviations used in thresholding
  - numStdDevR
```
private float numStdDevR
```
    number of standard deviations used in thresholding
  - numStdDevG
```
private float numStdDevG
```
    number of standard deviations used in thresholding
  - numStdDevB
```
private float numStdDevB
```
    number of standard deviations used in thresholding
  - valuesOutside
```
private float valuesOutside
```
    intensity values to be used in thresholding
  - valuesOutsideR
```
private float valuesOutsideR
```
    intensity values to be used in thresholding
  - valuesOutsideG
```
private float valuesOutsideG
```
    intensity values to be used in thresholding
  - valuesOutsideB
```
private float valuesOutsideB
```
    intensity values to be used in thresholding
  - alg
```
private AlgorithmStandardDeviationThreshold alg
```
    handle to algorithm
  - newImageRadio
```
private javax.swing.JRadioButton newImageRadio
```
    radio buttons
  - paintRadio
```
private javax.swing.JRadioButton paintRadio
```
    radio buttons
  - wholeImageRadio
```
private javax.swing.JRadioButton wholeImageRadio
```
    radio buttons
  - voiRegionsRadio
```
private javax.swing.JRadioButton voiRegionsRadio
```
    radio buttons
  - destinationRadioGroup
```
private javax.swing.ButtonGroup destinationRadioGroup
```
    radio groups
  - thresholdRadioGroup
```
private javax.swing.ButtonGroup thresholdRadioGroup
```
    radio groups
  - newImageDestination
```
private boolean newImageDestination
```
    flags for destination and threshold
  - wholeImageThreshold
```
private boolean wholeImageThreshold
```
    flags for destination and threshold
  - isColorImage
```
private boolean isColorImage
```
    boolean for color image
  - inverseThreshold
```
private boolean inverseThreshold
```
    boolean for inverse threshold
  - outMax
```
private double outMax
```
    image type max
  - outMin
```
private double outMin
```
    image type min
  - scriptFail
```
private boolean scriptFail
```
    boolean telling if script failed
  - numPixels
```
private int numPixels
```
  - sumPixelInten
```
double sumPixelInten
```
  - sumPixelIntenR
```
double sumPixelIntenR
```
  - sumPixelIntenG
```
double sumPixelIntenG
```
  - sumPixelIntenB
```
double sumPixelIntenB
```
- Constructor Detail
  - JDialogStandardDeviationThreshold
```
public JDialogStandardDeviationThreshold()
```
    empty constructor
  - JDialogStandardDeviationThreshold
```
public JDialogStandardDeviationThreshold(java.awt.Frame theParentFrame,
                                         ModelImage im)
```
    constructor
    
    Parameters:
    
    theParentFrame -
    
    im -
- Method Detail
  - init
```
public void init()
```
    init
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    action performed
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event -
  - validateParams
```
public boolean validateParams()
```
    validate params
  - callAlgorithm
```
protected void callAlgorithm()
```
    call algorithm
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    algorithm performed
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - the algorithm which has just completed
  - getRangeString
```
private java.lang.String getRangeString(int imageType)
```
    Parameters:
    
    imageType -
    
    Returns:
  - setOutMinAndMax
```
private void setOutMinAndMax(int imageType)
```
    sets out min and max...used in scripting
    
    Parameters:
    
    imageType -
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    store params
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    set gui from params
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - getActiveVOIs
```
private ViewVOIVector getActiveVOIs(ModelImage srcImage)
```
    This legacy code returns all active vois for a given source image. PlugIns should explicitly identify VOIs they would like to process using AlgorithmVOIProps, because the user may have already added other VOIs to srcImage, or VOIs may be created by the algorithm in an unexpected way. This plugin relied on AlgorithmVOIProp's getActiveVOIs() code, so that code has been moved into this plugin. Use of this method is discouraged, as shown by the old documentation for this method: not for use. should be moved to a better location. does NOT clone the VOIs that it find to be active, and inserts into a new ViewVOIVector. if no VOIs are active, the ViewVOIVector returned is null.
    
    Returns:
    
    All the active VOIs for a given srcImage.

Class JDialogStandardDeviationThreshold

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

srcImage

resultImage

VOIs

groupNum

srcVOI

algoVOI

UI

mainPanel

voiStatsPanel

voiStatsLeftPanel

voiStatsRightPanel

thresholdParametersPanel

thresholdParametersLeftPanel

thresholdParametersRightPanel

destinationPanel

thresholdPanel

stdDevTextField

stdDevTextFieldR

stdDevTextFieldG

stdDevTextFieldB

valuesOutsideTextField

valuesOutsideTextFieldR

valuesOutsideTextFieldG

valuesOutsideTextFieldB

inverseThresholdCheckBox

setMinThresholdCheckBox

setMinThresholdCheckBoxR

setMinThresholdCheckBoxG

setMinThresholdCheckBoxB

setMaxThresholdCheckBox

setMaxThresholdCheckBoxR

setMaxThresholdCheckBoxG

setMaxThresholdCheckBoxB

maxIntensity

maxIntensityR

maxIntensityG

maxIntensityB

minIntensity

minIntensityR

minIntensityG

minIntensityB

avgIntensity

avgIntensityR

avgIntensityG

avgIntensityB

stdDev

stdDevR

stdDevG

stdDevB

numStdDev

numStdDevR

numStdDevG

numStdDevB