Package gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork

Class JPanelDTIFiberTracking

  • All Implemented Interfaces:
    java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible
    public class JPanelDTIFiberTracking
extends javax.swing.JPanel
implements java.awt.event.ActionListener
    See Also:
    Serialized Form

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JPanel

        javax.swing.JPanel.AccessibleJPanel

      • Nested classes/interfaces inherited from class javax.swing.JComponent

        javax.swing.JComponent.AccessibleJComponent

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent e)  
      private void buildDTILoadPanel()  
      private void calcEigenVectorImage()
      Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.
      private void cleanup()  
      boolean createDerivedImages()
      Creates the images derived from the tensor image.
      static void createFrame()  
      void enableComputeButton()  
      ModelImage getColorMapImage()  
      ModelImage getEigenValueImage()  
      ModelImage getEigenVectorImage()  
      ModelImage getFAImage()  
      java.lang.String getOutputDirectory()
      Returns the output directory for the derived image calculations.
      ModelImage getTensorImage()
      Return the tensor image.
      private void init​(boolean bStandAlone)  
      void setInputImage​(ModelImage image)  
      private boolean validateData()  
      void windowClosing​(java.awt.event.WindowEvent event)  

      • Methods inherited from class javax.swing.JPanel

        getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

      • Methods inherited from class javax.swing.JComponent

        addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • EigenValueImageName

        public static final java.lang.String EigenValueImageName
        See Also:
        Constant Field Values

      • EigenVectorImageName

        public static final java.lang.String EigenVectorImageName
        See Also:
        Constant Field Values

      • ColorMapImageName

        public static final java.lang.String ColorMapImageName
        See Also:
        Constant Field Values

      • mainPanel

        private javax.swing.JPanel mainPanel
        main panel *

      • parentFrame

        private javax.swing.JDialog parentFrame
        Parent dialog, when this panel is created as a stand-alone dialog: *

      • pipeline

        private DTIPipeline pipeline
        Parent DTI pipeline framework

      • textDTIimage

        private javax.swing.JTextField textDTIimage

      • outputDirTextField

        private javax.swing.JTextField outputDirTextField

      • currDir

        private java.lang.String currDir
        current directory *

      • eigenVectorImage

        private ModelImage eigenVectorImage

      • eigenValueImage

        private ModelImage eigenValueImage

      • createADC

        javax.swing.JCheckBox createADC

      • displayADC

        javax.swing.JCheckBox displayADC

      • createColor

        javax.swing.JCheckBox createColor

      • displayColor

        javax.swing.JCheckBox displayColor

      • createEValue

        javax.swing.JCheckBox createEValue

      • displayEValue

        javax.swing.JCheckBox displayEValue

      • createEVector

        javax.swing.JCheckBox createEVector

      • displayEVector

        javax.swing.JCheckBox displayEVector

      • createFA

        javax.swing.JCheckBox createFA

      • displayFA

        javax.swing.JCheckBox displayFA

      • createRA

        javax.swing.JCheckBox createRA

      • displayRA

        javax.swing.JCheckBox displayRA

      • createTrace

        javax.swing.JCheckBox createTrace

      • displayTrace

        javax.swing.JCheckBox displayTrace

      • createVR

        javax.swing.JCheckBox createVR

      • displayVR

        javax.swing.JCheckBox displayVR

      • serif12

        private java.awt.Font serif12

      • calcStats

        private javax.swing.AbstractButton calcStats

    • Constructor Detail

      • JPanelDTIFiberTracking

        public JPanelDTIFiberTracking​(DTIPipeline pipeline)
        Constructs the Fiber Tracking input panel:

      • JPanelDTIFiberTracking

        public JPanelDTIFiberTracking​(javax.swing.JDialog parent,
                              DTIPipeline pipeline)
        Constructs the Fiber Tracking input panel:

    • Method Detail

      • createFrame

        public static void createFrame()

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent e)
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener

      • createDerivedImages

        public boolean createDerivedImages()
        Creates the images derived from the tensor image. The following images are generated: eigen vector image with eigen vectors eigen value image with eigen values functional anisotropy image trace image ra image volume ratio image adc image rgb color image displaying the eigen vectors weighted by the functional anisotropy as RGB.

      • getColorMapImage

        public ModelImage getColorMapImage()

      • getEigenValueImage

        public ModelImage getEigenValueImage()

      • getEigenVectorImage

        public ModelImage getEigenVectorImage()

      • getOutputDirectory

        public java.lang.String getOutputDirectory()
        Returns the output directory for the derived image calculations.
        Returns:
        output directory for the derived image calculations.

      • getTensorImage

        public ModelImage getTensorImage()
        Return the tensor image.
        Returns:
        tensor image.

      • setInputImage

        public void setInputImage​(ModelImage image)

      • windowClosing

        public void windowClosing​(java.awt.event.WindowEvent event)

      • buildDTILoadPanel

        private void buildDTILoadPanel()

      • calcEigenVectorImage

        private void calcEigenVectorImage()
        Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.

      • cleanup

        private void cleanup()

      • init

        private void init​(boolean bStandAlone)

      • enableComputeButton

        public void enableComputeButton()

      • validateData

        private boolean validateData()