Package gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork

Class JPanelDTIFiberTracking

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking

All Implemented Interfaces:

ActionListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible

public class JPanelDTIFiberTracking
extends JPanel
implements ActionListener

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private ModelImage	adcImage
static final String	ADCImageName
private AbstractButton	calcStats
static final String	ColorMapImageName
(package private) JCheckBox	createADC
(package private) JCheckBox	createColor
(package private) JCheckBox	createEValue
(package private) JCheckBox	createEVector
(package private) JCheckBox	createFA
(package private) JCheckBox	createRA
(package private) JCheckBox	createTrace
(package private) JCheckBox	createVR
private String	currDir	current directory *
(package private) JCheckBox	displayADC
(package private) JCheckBox	displayColor
(package private) JCheckBox	displayEValue
(package private) JCheckBox	displayEVector
(package private) JCheckBox	displayFA
(package private) JCheckBox	displayRA
(package private) JCheckBox	displayTrace
(package private) JCheckBox	displayVR
private ModelImage	eigenValueImage
static final String	EigenValueImageName
private ModelImage	eigenVectorImage
static final String	EigenVectorImageName
private ModelImage	FAImage
static final String	FAImageName
private JPanel	mainPanel	main panel *
private JTextField	outputDirTextField
private JDialog	parentFrame	Parent dialog, when this panel is created as a stand-alone dialog: *
private DTIPipeline	pipeline	Parent DTI pipeline framework
private ModelImage	raImage
static final String	RAImageName
private ModelImage	rgbImage
private static final long	serialVersionUID
private Font	serif12
private ModelImage	tensorImage
private JTextField	textDTIimage
private ModelImage	traceImage
static final String	TraceImageName
static final String	TrackFileName
private JPanelDTIVisualization	visualization
private ModelImage	vrImage
static final String	VRImageName

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
JPanelDTIFiberTracking(DTIPipeline pipeline)	Constructs the Fiber Tracking input panel:
JPanelDTIFiberTracking(JDialog parent, DTIPipeline pipeline)	Constructs the Fiber Tracking input panel:

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent e)
private void	buildDTILoadPanel()
private void	calcEigenVectorImage()	Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.
private void	cleanup()
boolean	createDerivedImages()	Creates the images derived from the tensor image.
static void	createFrame()
void	enableComputeButton()
ModelImage	getColorMapImage()
ModelImage	getEigenValueImage()
ModelImage	getEigenVectorImage()
ModelImage	getFAImage()
String	getOutputDirectory()	Returns the output directory for the derived image calculations.
ModelImage	getTensorImage()	Return the tensor image.
private void	init(boolean bStandAlone)
void	setInputImage(ModelImage image)
private boolean	validateData()
void	windowClosing(WindowEvent event)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

TraceImageName

public static final String TraceImageName

See Also:

• Constant Field Values

RAImageName

public static final String RAImageName

See Also:

• Constant Field Values

VRImageName

public static final String VRImageName

See Also:

• Constant Field Values

ADCImageName

public static final String ADCImageName

See Also:

• Constant Field Values

EigenValueImageName

public static final String EigenValueImageName

See Also:

• Constant Field Values

EigenVectorImageName

public static final String EigenVectorImageName

See Also:

• Constant Field Values

FAImageName

public static final String FAImageName

See Also:

• Constant Field Values

ColorMapImageName

public static final String ColorMapImageName

See Also:

• Constant Field Values

TrackFileName

public static final String TrackFileName

See Also:

• Constant Field Values

mainPanel

private JPanel mainPanel

main panel *

parentFrame

private JDialog parentFrame

Parent dialog, when this panel is created as a stand-alone dialog: *

pipeline

private DTIPipeline pipeline

Parent DTI pipeline framework

textDTIimage

private JTextField textDTIimage

outputDirTextField

private JTextField outputDirTextField

currDir

private String currDir

current directory *

visualization

private JPanelDTIVisualization visualization

tensorImage

private ModelImage tensorImage

eigenVectorImage

private ModelImage eigenVectorImage

FAImage

private ModelImage FAImage

eigenValueImage

private ModelImage eigenValueImage

rgbImage

private ModelImage rgbImage

traceImage

private ModelImage traceImage

raImage

private ModelImage raImage

vrImage

private ModelImage vrImage

adcImage

private ModelImage adcImage

createADC

JCheckBox createADC

displayADC

JCheckBox displayADC

createColor

JCheckBox createColor

displayColor

JCheckBox displayColor

createEValue

JCheckBox createEValue

displayEValue

JCheckBox displayEValue

createEVector

JCheckBox createEVector

displayEVector

JCheckBox displayEVector

createFA

JCheckBox createFA

displayFA

JCheckBox displayFA

createRA

JCheckBox createRA

displayRA

JCheckBox displayRA

createTrace

JCheckBox createTrace

displayTrace

JCheckBox displayTrace

createVR

JCheckBox createVR

displayVR

JCheckBox displayVR

serif12

private Font serif12

calcStats

private AbstractButton calcStats

Constructor Details

JPanelDTIFiberTracking

public JPanelDTIFiberTracking(DTIPipeline pipeline)

Constructs the Fiber Tracking input panel:

JPanelDTIFiberTracking

public JPanelDTIFiberTracking(JDialog parent,
 DTIPipeline pipeline)

Constructs the Fiber Tracking input panel:

Method Details

createFrame

public static void createFrame()

actionPerformed

public void actionPerformed(ActionEvent e)

Specified by:

actionPerformed in interface ActionListener

createDerivedImages

public boolean createDerivedImages()

Creates the images derived from the tensor image. The following images are generated: eigen vector image with eigen vectors eigen value image with eigen values functional anisotropy image trace image ra image volume ratio image adc image rgb color image displaying the eigen vectors weighted by the functional anisotropy as RGB.

getColorMapImage

public ModelImage getColorMapImage()

getEigenValueImage

public ModelImage getEigenValueImage()

getEigenVectorImage

public ModelImage getEigenVectorImage()

getFAImage

public ModelImage getFAImage()

getOutputDirectory

public String getOutputDirectory()

Returns the output directory for the derived image calculations.

Returns:

output directory for the derived image calculations.

getTensorImage

public ModelImage getTensorImage()

Return the tensor image.

Returns:

tensor image.

setInputImage

public void setInputImage(ModelImage image)

windowClosing

public void windowClosing(WindowEvent event)

buildDTILoadPanel

private void buildDTILoadPanel()

calcEigenVectorImage

private void calcEigenVectorImage()

Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.

cleanup

private void cleanup()

init

private void init(boolean bStandAlone)

enableComputeButton

public void enableComputeButton()

validateData

private boolean validateData()