Package gov.nih.mipav.model.algorithms

Class AlgorithmMatchForReference

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.AlgorithmMatchForReference

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmMatchForReference
extends AlgorithmBase

Will take Two 2D images (one Reference, one Adjusted) and use the Reference image's Resolutions to transform the adjusted Image into a new size and resolution that the Reference Image can then be matched to, while preserving all Field of Views (there is no loss of FOV).

Version:

1.0

Author:

Ben Link

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private ModelImage	adjImage	adjusted image.
private boolean	correctDims	check for 2-dimensionality.
private boolean	hasNewAdj	was a new adjusted image created.
private boolean	hasNewRef	was a new reference image created.
private ModelImage	newAdjImage	new adjusted image.
private ModelImage	newRefImage	new reference image.
private ModelImage	refImage	reference image.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmMatchForReference(ModelImage rImage, ModelImage aImage)	Constructor.. takes in a reference and adjusted modelImage

Method Summary

Modifier and Type	Method	Description
void	disposeLocal()	Dispose of local variables that may be taking up lots of room.
void	finalize()	Prepares this class for destruction.
ModelImage	getNewAdjustedImage()	Gets the new adjusted image created.
ModelImage	getNewReferenceImage()	Gets the new reference image created.
boolean	newAdjustedCreated()	tells if new adjusted image was created during run().
boolean	newReferenceCreated()	tells if new reference image was created during run().
void	runAlgorithm()	algorithm's run function....

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

adjImage

private ModelImage adjImage

adjusted image.

correctDims

private boolean correctDims

check for 2-dimensionality.

hasNewAdj

private boolean hasNewAdj

was a new adjusted image created.

hasNewRef

private boolean hasNewRef

was a new reference image created.

newAdjImage

private ModelImage newAdjImage

new adjusted image.

newRefImage

private ModelImage newRefImage

new reference image.

refImage

private ModelImage refImage

reference image.

Constructor Details

AlgorithmMatchForReference

public AlgorithmMatchForReference(ModelImage rImage,
 ModelImage aImage)

Constructor.. takes in a reference and adjusted modelImage

Parameters:

rImage - reference image

aImage - adjusted image

Method Details

disposeLocal

public void disposeLocal()

Dispose of local variables that may be taking up lots of room.

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

getNewAdjustedImage

public ModelImage getNewAdjustedImage()

Gets the new adjusted image created.

Returns:

new adj image

getNewReferenceImage

public ModelImage getNewReferenceImage()

Gets the new reference image created.

Returns:

new ref image

newAdjustedCreated

public boolean newAdjustedCreated()

tells if new adjusted image was created during run().

Returns:

if new was created

newReferenceCreated

public boolean newReferenceCreated()

tells if new reference image was created during run().

Returns:

if new was created

runAlgorithm

public void runAlgorithm()

algorithm's run function....

Specified by:

runAlgorithm in class AlgorithmBase