java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class SchwarzChristoffelMapping2
extends AlgorithmBase
```

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`(package private) class`	`SchwarzChristoffelMapping2.hppfun`
`(package private) class`	`SchwarzChristoffelMapping2.ODEHPModel`
`(package private) class`	`SchwarzChristoffelMapping2.ODESTModel`
`(package private) class`	`SchwarzChristoffelMapping2.stpfun`
`(package private) class`	`SchwarzChristoffelMapping2.stpfun2`
`(package private) class`	`SchwarzChristoffelMapping2.stpfun3`
`(package private) class`	`SchwarzChristoffelMapping2.stpfunEP`

Nested classes/interfaces inherited from class java.lang.Thread
java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private double`	`eps`
`private SchwarzChristoffelMapping`	`scm`
`private boolean`	`testRoutine`
`private double`	`tolerance`
`private double[][]`	`w`

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`SchwarzChristoffelMapping2()`
`SchwarzChristoffelMapping2(ModelImage destImg, ModelImage srcImg, double[][] w)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private SchwarzChristoffelMapping.polygon`	`forwardpoly(SchwarzChristoffelMapping.scmap map)`
`private double`	`hpaccuracy(SchwarzChristoffelMapping.scmap M)`
`private double[][]`	`hpderiv(double[][] zp, double[][] z, double[] beta, double[] c)`
`private void`	`hpevalinv(double[][] zp, SchwarzChristoffelMapping.scmap M, double[][] wp)`
`private void`	`hpinvmap(double[][] zp, double[][] wp, double[][] w, double[] beta, double[][] z, double[] c, double[][] qdat, double[][] z0, boolean ode, boolean newton, double tol, int maxiter)`
`SchwarzChristoffelMapping.scmap`	`hplmap(SchwarzChristoffelMapping.polygon poly, double[][] zin, double[] alphain, double[] c)`
`void`	`hplot(SchwarzChristoffelMapping.scmap M, double[] re, double[] im, int yInvert, boolean closed, double[] axis)`
`private void`	`hpparam(double[][] z, double[] c, double[][] qdat, double[][] w, double[] beta, double[] z0, double tol)`
`void`	`hpplot(double[][] w, double[] beta, double[][] z, double[] c, double[] re, double[] im, int yInvert, boolean closed, double[] axis)`
`void`	`runAlgorithm()`	Actually runs the algorithm.
`DoubleDouble`	`sign(DoubleDouble d)`
`private DoubleDouble[][]`	`stderivEP(DoubleDouble[][] zp, DoubleDouble[][] z, DoubleDouble[] beta, DoubleDouble[] c, int j)`
`private double[][]`	`stinvmap(double[][] wp, double[][] w, double[] beta, double[][] z, double[] c, double[][] qdat, double[][] z0, boolean ode, boolean newton, double tol, int maxiter)`
`private void`	`stparam(double[][] z, double[] c, double[][] qdat, double[][] w, double[] beta, int[] ends, double[][] z0, double tol)`
`void`	`stplot(double[][] w, double[] beta, double[][] z, double[] c, double[] re, double[] im, int yInvert, boolean closed, double[] axis)`
`private DoubleDouble[][]`	`stquadEP(DoubleDouble[][] z1, DoubleDouble[][] z2, int[] sing1, DoubleDouble[][] z, DoubleDouble[] beta, DoubleDouble[][] qdat)`
`private DoubleDouble[][]`	`stquadhEP(DoubleDouble[][] z1, DoubleDouble[][] z2, int[] sing1, DoubleDouble[][] z, DoubleDouble[] beta, DoubleDouble[][] qdat)`
`private double`	`stripAccuracy(SchwarzChristoffelMapping.scmap M)`
`private double[][]`	`stripeval(SchwarzChristoffelMapping.scmap M, double[][] zp)`
`private double[][]`	`stripevalinv(SchwarzChristoffelMapping.scmap M, double[][] wp, double[][] z0)`
`private SchwarzChristoffelMapping.scmap`	`stripmap(SchwarzChristoffelMapping.polygon poly, int[] endidx)`
`void`	`stripplot(SchwarzChristoffelMapping.scmap M, double[] re, double[] im, int yInvert, boolean closed, double[] axis)`
`private void`	`testHplmap1()`
`private void`	`testHplmap2()`
`private void`	`testHplmap3()`
`private void`	`testStripmap1()`
`private void`	`testStripmap2()`
`private DoubleDouble`	`zabs(DoubleDouble zr, DoubleDouble zi)`	zabs computes the absolute value or magnitude of a DoubleDouble precision complex variable zr + j*zi.
`private void`	`zdiv(DoubleDouble ar, DoubleDouble ai, DoubleDouble br, DoubleDouble bi, DoubleDouble[] cr, DoubleDouble[] ci)`	complex divide c = a/b.
`private void`	`zmlt(DoubleDouble ar, DoubleDouble ai, DoubleDouble br, DoubleDouble bi, DoubleDouble[] cr, DoubleDouble[] ci)`	complex multiply c = a * b.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

tolerance
```
private double tolerance
```

eps
```
private double eps
```

w
```
private double[][] w
```

testRoutine
```
private boolean testRoutine
```

scm
```
private SchwarzChristoffelMapping scm
```

Constructor Detail

SchwarzChristoffelMapping2
```
public SchwarzChristoffelMapping2()
```

SchwarzChristoffelMapping2

public SchwarzChristoffelMapping2(ModelImage destImg,
                                  ModelImage srcImg,
                                  double[][] w)

Method Detail

runAlgorithm
```
public void runAlgorithm()
```
Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

testHplmap1
```
private void testHplmap1()
```

testHplmap2
```
private void testHplmap2()
```

testHplmap3
```
private void testHplmap3()
```

testStripmap1
```
private void testStripmap1()
```

testStripmap2
```
private void testStripmap2()
```

stripmap

private SchwarzChristoffelMapping.scmap stripmap(SchwarzChristoffelMapping.polygon poly,
                                                 int[] endidx)

stripAccuracy

private double stripAccuracy(SchwarzChristoffelMapping.scmap M)

stparam

private void stparam(double[][] z,
                     double[] c,
                     double[][] qdat,
                     double[][] w,
                     double[] beta,
                     int[] ends,
                     double[][] z0,
                     double tol)

stripeval

private double[][] stripeval(SchwarzChristoffelMapping.scmap M,
                             double[][] zp)

stripevalinv

private double[][] stripevalinv(SchwarzChristoffelMapping.scmap M,
                                double[][] wp,
                                double[][] z0)

stinvmap

private double[][] stinvmap(double[][] wp,
                            double[][] w,
                            double[] beta,
                            double[][] z,
                            double[] c,
                            double[][] qdat,
                            double[][] z0,
                            boolean ode,
                            boolean newton,
                            double tol,
                            int maxiter)

hpevalinv

private void hpevalinv(double[][] zp,
                       SchwarzChristoffelMapping.scmap M,
                       double[][] wp)

hpinvmap

private void hpinvmap(double[][] zp,
                      double[][] wp,
                      double[][] w,
                      double[] beta,
                      double[][] z,
                      double[] c,
                      double[][] qdat,
                      double[][] z0,
                      boolean ode,
                      boolean newton,
                      double tol,
                      int maxiter)

hpderiv

private double[][] hpderiv(double[][] zp,
                           double[][] z,
                           double[] beta,
                           double[] c)

stripplot

public void stripplot(SchwarzChristoffelMapping.scmap M,
                      double[] re,
                      double[] im,
                      int yInvert,
                      boolean closed,
                      double[] axis)

stplot

public void stplot(double[][] w,
                   double[] beta,
                   double[][] z,
                   double[] c,
                   double[] re,
                   double[] im,
                   int yInvert,
                   boolean closed,
                   double[] axis)

hplot

public void hplot(SchwarzChristoffelMapping.scmap M,
                  double[] re,
                  double[] im,
                  int yInvert,
                  boolean closed,
                  double[] axis)

hpplot

public void hpplot(double[][] w,
                   double[] beta,
                   double[][] z,
                   double[] c,
                   double[] re,
                   double[] im,
                   int yInvert,
                   boolean closed,
                   double[] axis)

hplmap

public SchwarzChristoffelMapping.scmap hplmap(SchwarzChristoffelMapping.polygon poly,
                                              double[][] zin,
                                              double[] alphain,
                                              double[] c)

forwardpoly

private SchwarzChristoffelMapping.polygon forwardpoly(SchwarzChristoffelMapping.scmap map)

hpaccuracy

private double hpaccuracy(SchwarzChristoffelMapping.scmap M)

hpparam

private void hpparam(double[][] z,
                     double[] c,
                     double[][] qdat,
                     double[][] w,
                     double[] beta,
                     double[] z0,
                     double tol)

sign

public DoubleDouble sign(DoubleDouble d)

zabs
```
private DoubleDouble zabs(DoubleDouble zr,
                          DoubleDouble zi)
```
zabs computes the absolute value or magnitude of a DoubleDouble precision complex variable zr + j*zi.

Parameters:

zr - DoubleDouble

zi - DoubleDouble

Returns:

DoubleDouble

zmlt

private void zmlt(DoubleDouble ar,
                  DoubleDouble ai,
                  DoubleDouble br,
                  DoubleDouble bi,
                  DoubleDouble[] cr,
                  DoubleDouble[] ci)

complex multiply c = a * b.

Parameters:: ar - DoubleDouble; ai - DoubleDouble; br - DoubleDouble; bi - DoubleDouble; cr - DoubleDouble[]; ci - DoubleDouble[]

zdiv

private void zdiv(DoubleDouble ar,
                  DoubleDouble ai,
                  DoubleDouble br,
                  DoubleDouble bi,
                  DoubleDouble[] cr,
                  DoubleDouble[] ci)

complex divide c = a/b.

Parameters:: ar - DoubleDouble; ai - DoubleDouble; br - DoubleDouble; bi - DoubleDouble; cr - DoubleDouble[]; ci - DoubleDouble[]

stquadhEP

private DoubleDouble[][] stquadhEP(DoubleDouble[][] z1,
                                   DoubleDouble[][] z2,
                                   int[] sing1,
                                   DoubleDouble[][] z,
                                   DoubleDouble[] beta,
                                   DoubleDouble[][] qdat)

stquadEP

private DoubleDouble[][] stquadEP(DoubleDouble[][] z1,
                                  DoubleDouble[][] z2,
                                  int[] sing1,
                                  DoubleDouble[][] z,
                                  DoubleDouble[] beta,
                                  DoubleDouble[][] qdat)

stderivEP

private DoubleDouble[][] stderivEP(DoubleDouble[][] zp,
                                   DoubleDouble[][] z,
                                   DoubleDouble[] beta,
                                   DoubleDouble[] c,
                                   int j)

Class SchwarzChristoffelMapping2

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

tolerance

eps

w

testRoutine

scm

Constructor Detail

SchwarzChristoffelMapping2

SchwarzChristoffelMapping2

Method Detail

runAlgorithm

testHplmap1

testHplmap2

testHplmap3

testStripmap1

testStripmap2

stripmap

stripAccuracy

stparam

stripeval

stripevalinv

stinvmap

hpevalinv

hpinvmap

hpderiv

stripplot

stplot

hplot

hpplot

hplmap

forwardpoly

hpaccuracy

hpparam

sign

zabs

zmlt

zdiv

stquadhEP

stquadEP

stderivEP