Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmSubset

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmSubset
extends AlgorithmBase

Algorithm to create a 3D subset image from a 4D image. The user specifies the dimension to remove - x, y, z, or t and the value of the removed dimension.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
static int	REMOVE_T	Remove t dimension.
static int	REMOVE_X	Remove x dimension.
static int	REMOVE_Y	Remove y dimension.
static int	REMOVE_Z	Remove z dimension.
private int	removeDim	Dimension to be removed.
private int	sliceNum	Slice value for removed dimension.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmSubset(ModelImage srcImage, ModelImage destImage, int removeDim, int sliceNum)	import source and destination images into the class.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares this class for destruction.
void	runAlgorithm()	Runs the algorithm.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

REMOVE_X

public static final int REMOVE_X

Remove x dimension.

See Also:

Constant Field Values

REMOVE_Y

public static final int REMOVE_Y

Remove y dimension.

See Also:

Constant Field Values

REMOVE_Z

public static final int REMOVE_Z

Remove z dimension.

See Also:

Constant Field Values

REMOVE_T

public static final int REMOVE_T

Remove t dimension.

See Also:

Constant Field Values

removeDim

private final int removeDim

Dimension to be removed.

sliceNum

private final int sliceNum

Slice value for removed dimension.

Constructor Detail

AlgorithmSubset

public AlgorithmSubset(ModelImage srcImage,
                       ModelImage destImage,
                       int removeDim,
                       int sliceNum)

import source and destination images into the class.

Parameters:

srcImage - source image (image to clip from)

destImage - destination image (image to paste to)

removeDim - the dimension to be removed

sliceNum - slice value for removed dimension

Method Detail

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Runs the algorithm.

Specified by:

runAlgorithm in class AlgorithmBase