Package gov.nih.mipav.view

Class ViewJComponentRegistration

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

gov.nih.mipav.view.ViewJComponentBase

gov.nih.mipav.view.ViewJComponentEditImage

gov.nih.mipav.view.ViewJComponentRegistration

All Implemented Interfaces:

PaintGrowListener, ScreenCoordinateListener, MouseListener, MouseMotionListener, MouseWheelListener, ImageObserver, MenuContainer, Serializable, EventListener

public class ViewJComponentRegistration
extends ViewJComponentEditImage
implements MouseMotionListener, MouseListener

DOCUMENT ME!

Author:

William Gandler

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
protected Cursor	addPointCursor	DOCUMENT ME!
private int	adjMark	number of VOIs for adjustable slice
static final int	ADJMARK	DOCUMENT ME!
private Point	anchorPt	DOCUMENT ME!
private int	blue	DOCUMENT ME!
private short	centerid	id of rotation center
private VOI	centerVOI	center rotation VOI
protected Cursor	defaultCursor	DOCUMENT ME!
private boolean	doAdjMark	DOCUMENT ME!
private boolean	doCenter	DOCUMENT ME!
private boolean	doDrag	no adjusted slice movements with mouseDrag
private boolean	doRefMark	DOCUMENT ME!
private int	green	DOCUMENT ME!
private float	hue	DOCUMENT ME!
private short	id	DOCUMENT ME!
protected Cursor	magRegionCursor	Custom cursor: magnify region.
private int[]	markerType	DOCUMENT ME!
(package private) int	memCount	DOCUMENT ME!
protected Cursor	moveCursor	DOCUMENT ME!
private VOI	newVOI	DOCUMENT ME!
private int	newX	adjustable slice VOI.
private int	newY	adjustable slice VOI.
private boolean	oldFrame	Used to set old or new mode of registration.
float	OPACITY	Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
protected Cursor	pointCursor	DOCUMENT ME!
private float[]	ptCoord	DOCUMENT ME!
protected Cursor	rectCursor	DOCUMENT ME!
private int	red	DOCUMENT ME!
private int	refMark	number of VOIs for reference slice
static final int	REFMARK	DOCUMENT ME!
protected Cursor	removePointCursor	DOCUMENT ME!
static final int	ROTATIONCENTER	The 3 types of markers - rotation center, reference slice, and adjusted slice.
private int	rotCenterMark	number of VOIs for rotation center
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
protected ViewJFrameRegistrationTool	toolFrame	Frame where component image is displayed (only for new RegistrationTool).
protected Cursor	waitCursor	DOCUMENT ME!
protected Cursor	wandCursor	DOCUMENT ME!
private float	xFinish	values obtained when mouseReleased
private int[]	xOrg	DOCUMENT ME!
private int[]	xPres	DOCUMENT ME!
private float	xRotation	DOCUMENT ME!
private float	xStart	values obtained when mousePressed
private float	yFinish	values obtained when mouseReleased
private int[]	yOrg	DOCUMENT ME!
private int[]	yPres	DOCUMENT ME!
private float	yRotation	DOCUMENT ME!
private float	yStart	values obtained when mousePressed

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage

ACTIVE_IMAGE_COLOR, allActive, alphaBlend, alphaPrime, checkerDialog, cleanImageBufferA, cleanImageBufferB, crosshairCursor, cursorMode, displayFuzzy, drawVOIs, frame, frameControls, fuzzyThreshold, GEOMETRIC_ZOOM, gridColor, gridLabelingOn, gridLabelOrientation, gridOverlayOn, gridSpacingX, gridSpacingY, growDialog, imageA, imageActive, imageB, imageBufferA, imageBufferActive, imageBufferB, imageExtents, imageStatList, intensityDropper, less, lessB, lessG, lessR, LINEAR_ZOOM, logMagDisplay, LUTa, LUTb, m_kPatientSlice, m_kWinLevel, MAGR_HEIGHT, MAGR_MAG, MAGR_WIDTH, magSettings, maxDistance, maxExtents, modifyFlag, more, moreB, moreG, moreR, mousePressIsShiftDown, MultiFrameEyetrackerMode, nColumnCheckers, nRowCheckers, onTop, orientation, overlayOn, paintBitmap, paintBitmapBU, paintBitmapSwitch, paintBrush, paintBrushDim, paintBrushDimPrevious, paintBrushPrevious, paintBrushSize, paintBuffer, paintImage, paintImagePrevious, pixBuffer, pixBufferB, PluginEyetrackerMode, previousPaintBrush, rgbString, RGBTA, RGBTB, saveValue, saveValueB, saveValueG, saveValueR, saveX, saveY, saveZ, seedPaintBitmap, seedVal, seedValB, seedValG, seedValR, SingleFrameEyetrackerMode, sizeLimit, slice, stringOverride, time, timeSlice, toppedColor, useBComp, useGComp, useRComp, useVOI, variableThresholds, visRect, voiManager, winLevel, winLevelSet, xMod, xPG, yMod, yPG, zPG

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase

ANNOTATION, BOTH, CENTER_VOI, CUBE_BOUNDS, DEFAULT, DELETE_POINT, DROPPER_PAINT, ELLIPSE, ERASER_PAINT, IMAGE_A, IMAGE_B, imageDim, img, imgB, interpMode, INTERPOLATE_A, INTERPOLATE_B, INTERPOLATE_BOTH, lastMouseX, lastMouseY, LEVELSET, LINE, LIVEWIRE, MAG_REGION, memImageA, memImageB, MOVE, MOVE_INTERSECTION_POINT, MOVE_POINT, MOVE_VOIPOINT, NEAREST_BOTH, NEW_POINT, NEW_VOI, OUT_OF_BOUNDS, PAINT_CAN, PAINT_VASC, PAINT_VOI, POINT_VOI, POLYLINE, POLYLINE_SLICE_VOI, PROBE, PROTRACTOR, QUICK_LUT, RECTANGLE, RECTANGLE3D, resolutionX, resolutionY, RETRACE, ROTATE, SELECT, showSliceNumber, sliceString, SMOOTH, SPLIT_VOI, textColor, TRANSLATE, VOI_3D, WAND, WIN_REGION, ZOOMING_IN, ZOOMING_OUT, zoomX, zoomY

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
ViewJComponentRegistration(ViewJFrameRegistration _frame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, ModelImage _imageB, ModelLUT _LUTb, float[] imgBufferB, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, float alphaBl)	Constructor: ImageA and ImageB are expected to be of the same dimensionality !!
ViewJComponentRegistration(ViewJFrameRegistrationTool _toolFrame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, ModelImage _imageB, ModelLUT _LUTb, float[] imgBufferB, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, float alphaBl)	Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Method Summary

Modifier and Type	Method	Description
void	deleteAdjRotVOIs()	Deletes all ROTATIONCENTER and ADJMARK VOIs.
void	deleteAdjustableVOIs()	Deletes all ADJMARK VOIs.
void	deletePoint(boolean isReference)	If a point is selected of the given type (reference or adjusted) delete the point and reset the.
void	deleteReferenceVOIs()	Deletes all REFMARK VOIs.
void	deleteRefRotVOIs()	Deletes all REFMARK and ROTATIONCENTER VOIs.
void	deleteVOIs()	Deletes all VOIs.
void	dispose(boolean gcFlag)	Sets all variables to null, disposes, and garbage collects.
protected void	finalize()	Cleans up memory.
int	getAdjMark()	Returns the adjust mark flag.
int	getBlue()	accessor that returns int blue.
int	getGreen()	Accessor that returns int green.
int[]	getMarkerType()	Returns the marker type.
int	getnVOI()	Returns the number of VOIs.
float	getOpacity()	Returns the opacity used in alpha blending between the input image and the reference image.
int	getRed()	Returns int red.
int	getRefMark()	Returns the reference mark flag.
int[]	getxOrg()	Returns the X origin.
int[]	getxPres()	DOCUMENT ME!
int[]	getyOrg()	Returns the Y origin.
int[]	getyPres()	DOCUMENT ME!
void	makeAdjustableVOI(WildMagic.LibFoundation.Mathematics.Vector3f adjPoint)	Constructs reference point VOI from the refPoint passed in.
void	makeReferenceVOI(WildMagic.LibFoundation.Mathematics.Vector3f refPoint)	Constructs reference point VOI from the refPoint passed in.
void	mouseClicked(MouseEvent mouseEvent)	When the mouse is clicked in the image, several different things may happen.
void	mouseDragged(MouseEvent mouseEvent)	Drags an VOI real time by calling a series of translations and draws.
void	mouseMoved(MouseEvent mouseEvent)	If the mode is level set, draws level sets as user moves mouse.
void	mousePressed(MouseEvent mouseEvent)	Sets the mode of the program depending on the cursor mode.
void	mouseReleased(MouseEvent mouseEvent)	This function sets up and draws the VOI according to the mode.
void	moveVOIPosition(int deltaX, int deltaY)	Moves VOIs to new position by deltaX and deltaY.
void	moveVOITo(int id, int x, int y)	Moves VOI with ID == id to a new position (x,y).
void	paintComponent(Graphics g)	Paints the image and calls drawSelf for all VOIs.
void	paintWindowComponent(Graphics g, MouseEvent mouseEvent)	Paints the image and calls drawSelf for all VOIs.
void	setAdjMark(boolean doAdj)	Sets the adjusted mark flag.
void	setCenter(boolean doCen)	Sets the center point used in transformations.
void	setCursorMode(int mode)	Switches modes based on the variable mode.
void	setLogMagDisplay(boolean flag)	Sets the log magnitude display flag.
void	setLUTa(ModelLUT LUT)	Sets the model LUT for the imageA.
void	setLUTb(ModelLUT LUT)	Sets the model LUTb for the imageB.
void	setMouseDrag(boolean doDrag)	doDrag true enables the adjusted slice to respond to mouse press and drag events doDrag false restricts the adjusted slice to responding to mouse press and release events.
void	setNewAlphaBlend(int value)	Sets the alpha blending of parameter for two image displaying.
void	setRefMark(boolean doRef)	Sets the reference mark flag.

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage

calcPaintedVolume, cine, commitMask, commitMask, commitMask, commitMask, commitPaintToMask, commitPaintToUbyteMask, createImg, createImg, ctMode, disposeLocal, downSlice, draw3DVOIs, drawGradicules, drawStringBW, eraseAllPaint, fileToScreen, fileToScreenVOI, getActiveImage, getActiveImageBuffer, getActiveImageSliceBuffer, getActiveLUT, getActiveRGB, getAlphaBlend, getBandSpacing, getBrushSize, getCleanImageBufferB, getCursorMode, getFrame, getGridColor, getGridLabeling, getGridLabelOrientation, getGridOverlay, getGridSpacingX, getGridSpacingY, getHBrushSize, getImageA, getImageB, getImageBufferA, getImageBufferB, getIntensityDropper, getLUTa, getLUTb, getMaxExtents, getModifyFlag, getNumPoints, getOrientation, getOverlayOn, getPaintBitmap, getPaintBuffer, getPaintMask, getPixBuffer, getPixBufferB, getRASScannerPositionLabels, getRGBPaintComponents, getRGBTA, getRGBTB, getScannerPositionLabels, getShowMagIntensityEnabled, getSlice, getTimeSlice, getVOIHandler, getVOIManager, getxMod, getxSep, getxStart, getyMod, getySep, getyStart, getZoomMagnitudeX, getZoomMagnitudeY, isCheckerboardAnimate, isCheckerboarded, isHighlight, isMakingCheckerboard, isZeroToOneLUTAdj, loadPaintBrush, loopBandSpacing, loopBandSpacingReverse, mouseEntered, mouseExited, mousePressedPaint, mouseWheelMoved, openUDLUTandTransferFunct, paintComponentForPrinter, paintMagComponent, patientToScreen, patientToScreenVOI, performPaint, performPaint, processDefaultMouseDrag, quickSwitchBrush, readLUTandTFunctFrom, recordPanning, recordZoom, regionGrow, regionGrow, regionGrow, regionGrow, regionGrow, regionGrowColor, rememberPaintBrushSize, resetLUT, resetLUTs, resetPaintBrushSize, restartCheckerboardAnimateThread, saveLUTandTransferFunction, saveUDLUT, screenToFile, screenToFile, screenToFile, screenToFileVOI, screenToFileVOI, screenToFileVOI, setActiveImage, setAlphaBlend, setBandSpacing, setBuffers, setCenter, setCheckerboard, setCheckerboardAnimate, setCrosshairCursor, setDisplayFuzzy, setDrawVOIs, setEnabled, setEyetrackerRecordingMode, setEyetrackerRecordMode, setFrameControls, setFullScreenModeLocation, setFuzzyThreshold, setGridColor, setGridLabelingOn, setGridLabelOrientation, setGridOverlay, setGridSpacingX, setGridSpacingY, setGrowDialog, setHasThreshold1, setHasThreshold2, setHighlightColor, setImageA, setImageB, setImageBufferB, setImageColocalize, setImageExtents, setImageSlice, setIntensityDropper, setLess, setLessB, setLessG, setLessR, setMakingCheckerboard, setMaxDistance, setModifyFlag, setMore, setMoreB, setMoreG, setMoreR, setOverlay, setPaintBitmapSwitch, setPaintBrushSize, setPaintMask, setPixelInformationAtLocation, setRegionGrowVars, setRGBPaintComponents, setRGBTA, setRGBTB, setShowMagIntensity, setShowSliceNum, setSizeLimit, setSlice, setStringOverride, setThresholdColors, setThresholds, setTimeSlice, setUseVOI, setVariableThresholds, setVOIManager, setWindLevel, setxSep, setySep, setZeroToOneLUTAdj, show, show, show, showBlank, showGridOverlay, showOverlay, showRegionInfo, showRegionInfo, showRegionInfo, showStatisticsCalculator, undoLastPaint, updatePaint, updatePaintBrushCursor, upSlice, useHighlight

Methods inherited from class gov.nih.mipav.view.ViewJComponentBase

disposeLocal, getImage, getInterpMode, getLastMouseX, getLastMouseY, getPreferredSize, getResolutionX, getResolutionY, getScaledX, getScaledY, getSelectedPaintColor, getShowMagIntensityEnabled, getSize, getZoomX, getZoomY, importImage, importImageB, LocalToScreen, makePaintBitmapBorder, makePaintImage, paintCursorBoxComponent, paintWindowComponent, paintWindowComponent, ScreenToLocal, setInterpolationMode, setResolutions, setShowSliceNumber, setSliceString, setTextColor, setZoom, setZoomExact, update

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUI, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateUI

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAccessibleContext, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.MouseListener

mouseEntered, mouseExited

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

getHeight, getResolutionX, getResolutionY, getWidth, getZoomX, getZoomY

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

ROTATIONCENTER

public static final int ROTATIONCENTER

The 3 types of markers - rotation center, reference slice, and adjusted slice.

See Also:

• Constant Field Values

REFMARK

public static final int REFMARK

DOCUMENT ME!

See Also:

• Constant Field Values

ADJMARK

public static final int ADJMARK

DOCUMENT ME!

See Also:

• Constant Field Values

OPACITY

public float OPACITY

Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)

addPointCursor

protected Cursor addPointCursor

DOCUMENT ME!

defaultCursor

protected Cursor defaultCursor

DOCUMENT ME!

magRegionCursor

protected Cursor magRegionCursor

Custom cursor: magnify region.

moveCursor

protected Cursor moveCursor

DOCUMENT ME!

pointCursor

protected Cursor pointCursor

DOCUMENT ME!

rectCursor

protected Cursor rectCursor

DOCUMENT ME!

removePointCursor

protected Cursor removePointCursor

DOCUMENT ME!

waitCursor

protected Cursor waitCursor

DOCUMENT ME!

wandCursor

protected Cursor wandCursor

DOCUMENT ME!

toolFrame

protected ViewJFrameRegistrationTool toolFrame

Frame where component image is displayed (only for new RegistrationTool).

memCount

int memCount

DOCUMENT ME!

adjMark

private int adjMark

number of VOIs for adjustable slice

anchorPt

private Point anchorPt

DOCUMENT ME!

centerid

private short centerid

id of rotation center

centerVOI

private VOI centerVOI

center rotation VOI

doAdjMark

private boolean doAdjMark

DOCUMENT ME!

doCenter

private boolean doCenter

DOCUMENT ME!

doDrag

private boolean doDrag

no adjusted slice movements with mouseDrag

doRefMark

private boolean doRefMark

DOCUMENT ME!

hue

private float hue

DOCUMENT ME!

id

private short id

DOCUMENT ME!

markerType

private int[] markerType

DOCUMENT ME!

newVOI

private VOI newVOI

DOCUMENT ME!

newX

private int newX

adjustable slice VOI.

newY

private int newY

adjustable slice VOI.

oldFrame

private boolean oldFrame

Used to set old or new mode of registration.

ptCoord

private float[] ptCoord

DOCUMENT ME!

red

private int red

DOCUMENT ME!

green

private int green

DOCUMENT ME!

blue

private int blue

DOCUMENT ME!

refMark

private int refMark

number of VOIs for reference slice

rotCenterMark

private int rotCenterMark

number of VOIs for rotation center

xFinish

private float xFinish

values obtained when mouseReleased

yFinish

private float yFinish

values obtained when mouseReleased

xOrg

private int[] xOrg

DOCUMENT ME!

xPres

private int[] xPres

DOCUMENT ME!

xRotation

private float xRotation

DOCUMENT ME!

xStart

private float xStart

values obtained when mousePressed

yStart

private float yStart

values obtained when mousePressed

yOrg

private int[] yOrg

DOCUMENT ME!

yPres

private int[] yPres

DOCUMENT ME!

yRotation

private float yRotation

DOCUMENT ME!

Constructor Details

ViewJComponentRegistration

public ViewJComponentRegistration(ViewJFrameRegistration _frame,
 ModelImage _imageA,
 ModelLUT _LUTa,
 float[] imgBufferA,
 ModelImage _imageB,
 ModelLUT _LUTb,
 float[] imgBufferB,
 int[] pixelBuffer,
 float zoom,
 int[] extents,
 boolean logMagDisplay,
 int _orientation,
 float alphaBl)

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Parameters:

_frame - frame where image(s) will be displayed

_imageA - Model of the image that will be displayed

_LUTa - LUT used to display imageA

imgBufferA - storage buffer used to display image A

_imageB - Model of the image that will be displayed

_LUTb - LUT used to display imageB

imgBufferB - storage buffer used to display image B

pixelBuffer - storage buffer used to build a displayable image

zoom - initial magnification of image

extents - initial display dimensions of the image

logMagDisplay - display log magnitude of image

_orientation - orientation of the image

alphaBl - DOCUMENT ME!

ViewJComponentRegistration

public ViewJComponentRegistration(ViewJFrameRegistrationTool _toolFrame,
 ModelImage _imageA,
 ModelLUT _LUTa,
 float[] imgBufferA,
 ModelImage _imageB,
 ModelLUT _LUTb,
 float[] imgBufferB,
 int[] pixelBuffer,
 float zoom,
 int[] extents,
 boolean logMagDisplay,
 int _orientation,
 float alphaBl)

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Parameters:

_toolFrame - frame where image(s) will be displayed

_imageA - Model of the image that will be displayed

_LUTa - LUT used to display imageA

imgBufferA - storage buffer used to display image A

_imageB - Model of the image that will be displayed

_LUTb - LUT used to display imageB

imgBufferB - storage buffer used to display image B

pixelBuffer - storage buffer used to build a displayable image

zoom - initial magnification of image

extents - initial display dimensions of the image

logMagDisplay - display log magnitude of image

_orientation - orientation of the image

alphaBl - DOCUMENT ME!

Method Details

deleteAdjRotVOIs

public void deleteAdjRotVOIs()

Deletes all ROTATIONCENTER and ADJMARK VOIs.

deleteAdjustableVOIs

public void deleteAdjustableVOIs()

Deletes all ADJMARK VOIs.

deletePoint

public void deletePoint(boolean isReference)

If a point is selected of the given type (reference or adjusted) delete the point and reset the.

Parameters:

isReference - delete point if of this type

deleteReferenceVOIs

public void deleteReferenceVOIs()

Deletes all REFMARK VOIs.

deleteRefRotVOIs

public void deleteRefRotVOIs()

Deletes all REFMARK and ROTATIONCENTER VOIs.

deleteVOIs

public void deleteVOIs()

Deletes all VOIs.

dispose

public void dispose(boolean gcFlag)

Sets all variables to null, disposes, and garbage collects.

Overrides:

dispose in class ViewJComponentEditImage

Parameters:

gcFlag - if true garbage collector should be called.

getAdjMark

public int getAdjMark()

Returns the adjust mark flag.

Returns:

int adjust mark flag

getBlue

public int getBlue()

accessor that returns int blue.

Returns:

int blue component

getGreen

public int getGreen()

Accessor that returns int green.

Returns:

int green component

getMarkerType

public int[] getMarkerType()

Returns the marker type.

Returns:

int[] marker

getnVOI

public int getnVOI()

Returns the number of VOIs.

Overrides:

getnVOI in class ViewJComponentEditImage

Returns:

int number of VOIs

getOpacity

public float getOpacity()

Returns the opacity used in alpha blending between the input image and the reference image.

Overrides:

getOpacity in class ViewJComponentEditImage

Returns:

float opacity

getRed

public int getRed()

Returns int red.

Returns:

int red component

getRefMark

public int getRefMark()

Returns the reference mark flag.

Returns:

int reference mark flag

getxOrg

public int[] getxOrg()

Returns the X origin.

Returns:

int[] the X origin

getxPres

public int[] getxPres()

DOCUMENT ME!

Returns:

int[] list of x coordinates

getyOrg

public int[] getyOrg()

Returns the Y origin.

Returns:

int[] the Y origin

getyPres

public int[] getyPres()

DOCUMENT ME!

Returns:

int[] list of y coordinates

makeAdjustableVOI

public void makeAdjustableVOI(WildMagic.LibFoundation.Mathematics.Vector3f adjPoint)

Constructs reference point VOI from the refPoint passed in.

Parameters:

adjPoint - a point VOI is generated from the 3D point

makeReferenceVOI

public void makeReferenceVOI(WildMagic.LibFoundation.Mathematics.Vector3f refPoint)

Constructs reference point VOI from the refPoint passed in.

Parameters:

refPoint - a point VOI is generated from the 3D point

mouseClicked

public void mouseClicked(MouseEvent mouseEvent)

When the mouse is clicked in the image, several different things may happen. If a Region of Interest (VOI) is selected and the click count is 2, a VOI dialog should pop up. If the click count is 1 and the mouse is in an VOI, it should select the VOI. In all other cases, a click within the image but not in an VOI should deselect all VOIs.

Specified by:

mouseClicked in interface MouseListener

Overrides:

mouseClicked in class ViewJComponentEditImage

Parameters:

mouseEvent - event that triggers function; contains click count

mouseDragged

public void mouseDragged(MouseEvent mouseEvent)

Drags an VOI real time by calling a series of translations and draws. Once the mouse is released, the positions are reset permenantly. Also rubberbands points if the cursor indicates it by calling rubberbandVOI.

Specified by:

mouseDragged in interface MouseMotionListener

Overrides:

mouseDragged in class ViewJComponentEditImage

Parameters:

mouseEvent - event that triggered function

mousePressed

public void mousePressed(MouseEvent mouseEvent)

Sets the mode of the program depending on the cursor mode. If the mode is move, activates the contour or line and enables the delete button.

Specified by:

mousePressed in interface MouseListener

Overrides:

mousePressed in class ViewJComponentEditImage

Parameters:

mouseEvent - event that triggered function

mouseMoved

public void mouseMoved(MouseEvent mouseEvent)

If the mode is level set, draws level sets as user moves mouse. Otherwise, changes the cursor depending on where the mouse is in relation to the VOI.

Specified by:

mouseMoved in interface MouseMotionListener

Overrides:

mouseMoved in class ViewJComponentEditImage

Parameters:

mouseEvent - event that triggered the function

mouseReleased

public void mouseReleased(MouseEvent mouseEvent)

This function sets up and draws the VOI according to the mode.

Specified by:

mouseReleased in interface MouseListener

Overrides:

mouseReleased in class ViewJComponentEditImage

Parameters:

mouseEvent - event that triggered function

moveVOIPosition

public void moveVOIPosition(int deltaX,
 int deltaY)

Moves VOIs to new position by deltaX and deltaY.

Parameters:

deltaX - distance VOI moves in the X direction

deltaY - distance VOI moves in the Y direction

moveVOITo

public void moveVOITo(int id,
 int x,
 int y)

Moves VOI with ID == id to a new position (x,y).

Parameters:

id - DOCUMENT ME!

x - x coordinate of new position

y - y coordinate of new position

paintComponent

public void paintComponent(Graphics g)

Paints the image and calls drawSelf for all VOIs.

Overrides:

paintComponent in class ViewJComponentEditImage

Parameters:

g - graphics

paintWindowComponent

public void paintWindowComponent(Graphics g,
 MouseEvent mouseEvent)

Paints the image and calls drawSelf for all VOIs.

Parameters:

g - graphics

mouseEvent - DOCUMENT ME!

setAdjMark

public void setAdjMark(boolean doAdj)

Sets the adjusted mark flag.

Parameters:

doAdj - DOCUMENT ME!

setCenter

public void setCenter(boolean doCen)

Sets the center point used in transformations.

Parameters:

doCen - if true construct a center point VOI

setLogMagDisplay

public void setLogMagDisplay(boolean flag)

Sets the log magnitude display flag.

Overrides:

setLogMagDisplay in class ViewJComponentEditImage

Parameters:

flag - if true display log of the Magnitude of the complex image

setLUTa

public void setLUTa(ModelLUT LUT)

Sets the model LUT for the imageA.

Overrides:

setLUTa in class ViewJComponentEditImage

Parameters:

LUT - the model LUT

setLUTb

public void setLUTb(ModelLUT LUT)

Sets the model LUTb for the imageB.

Overrides:

setLUTb in class ViewJComponentEditImage

Parameters:

LUT - the model LUT

setCursorMode

public void setCursorMode(int mode)

Switches modes based on the variable mode. Sets rubberband activity and the cursor.

Overrides:

setCursorMode in class ViewJComponentEditImage

Parameters:

mode - the integer mode

setMouseDrag

public void setMouseDrag(boolean doDrag)

doDrag true enables the adjusted slice to respond to mouse press and drag events doDrag false restricts the adjusted slice to responding to mouse press and release events.

Parameters:

doDrag - DOCUMENT ME!

setNewAlphaBlend

public void setNewAlphaBlend(int value)

Sets the alpha blending of parameter for two image displaying.

Parameters:

value - amount [0,100] that is the percentage of Image A to be displayed

setRefMark

public void setRefMark(boolean doRef)

Sets the reference mark flag.

Parameters:

doRef - DOCUMENT ME!

finalize

protected void finalize()

Cleans up memory.

Overrides:

finalize in class ViewJComponentEditImage