java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - gov.nih.mipav.view.ViewJComponentBase
      - gov.nih.mipav.view.ViewJComponentEditImage
        
        gov.nih.mipav.view.ViewJComponentRegistration

All Implemented Interfaces:

PaintGrowListener, ScreenCoordinateListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener
```
public class ViewJComponentRegistration
extends ViewJComponentEditImage
implements java.awt.event.MouseMotionListener, java.awt.event.MouseListener
```
DOCUMENT ME!

Author:

William Gandler

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JComponent
  javax.swing.JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`protected java.awt.Cursor`	`addPointCursor`	DOCUMENT ME!
`private int`	`adjMark`	number of VOIs for adjustable slice
`static int`	`ADJMARK`	DOCUMENT ME!
`private java.awt.Point`	`anchorPt`	DOCUMENT ME!
`private int`	`blue`	DOCUMENT ME!
`private short`	`centerid`	id of rotation center
`private VOI`	`centerVOI`	center rotation VOI
`protected java.awt.Cursor`	`defaultCursor`	DOCUMENT ME!
`private boolean`	`doAdjMark`	DOCUMENT ME!
`private boolean`	`doCenter`	DOCUMENT ME!
`private boolean`	`doDrag`	no adjusted slice movements with mouseDrag
`private boolean`	`doRefMark`	DOCUMENT ME!
`private int`	`green`	DOCUMENT ME!
`private float`	`hue`	DOCUMENT ME!
`private short`	`id`	DOCUMENT ME!
`protected java.awt.Cursor`	`magRegionCursor`	Custom cursor: magnify region.
`private int[]`	`markerType`	DOCUMENT ME!
`(package private) int`	`memCount`	DOCUMENT ME!
`protected java.awt.Cursor`	`moveCursor`	DOCUMENT ME!
`private VOI`	`newVOI`	DOCUMENT ME!
`private int`	`newX`	adjustable slice VOI.
`private int`	`newY`	adjustable slice VOI.
`private boolean`	`oldFrame`	Used to set old or new mode of registration.
`float`	`OPACITY`	Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
`protected java.awt.Cursor`	`pointCursor`	DOCUMENT ME!
`private float[]`	`ptCoord`	DOCUMENT ME!
`protected java.awt.Cursor`	`rectCursor`	DOCUMENT ME!
`private int`	`red`	DOCUMENT ME!
`private int`	`refMark`	number of VOIs for reference slice
`static int`	`REFMARK`	DOCUMENT ME!
`protected java.awt.Cursor`	`removePointCursor`	DOCUMENT ME!
`static int`	`ROTATIONCENTER`	The 3 types of markers - rotation center, reference slice, and adjusted slice.
`private int`	`rotCenterMark`	number of VOIs for rotation center
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`protected ViewJFrameRegistrationTool`	`toolFrame`	Frame where component image is displayed (only for new RegistrationTool).
`protected java.awt.Cursor`	`waitCursor`	DOCUMENT ME!
`protected java.awt.Cursor`	`wandCursor`	DOCUMENT ME!
`private float`	`xFinish`	values obtained when mouseReleased
`private int[]`	`xOrg`	DOCUMENT ME!
`private int[]`	`xPres`	DOCUMENT ME!
`private float`	`xRotation`	DOCUMENT ME!
`private float`	`xStart`	values obtained when mousePressed
`private float`	`yFinish`	values obtained when mouseReleased
`private int[]`	`yOrg`	DOCUMENT ME!
`private int[]`	`yPres`	DOCUMENT ME!
`private float`	`yRotation`	DOCUMENT ME!
`private float`	`yStart`	values obtained when mousePressed

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage
ACTIVE_IMAGE_COLOR, allActive, alphaBlend, alphaPrime, checkerDialog, cleanImageBufferA, cleanImageBufferB, crosshairCursor, cursorMode, displayFuzzy, drawVOIs, frame, frameControls, fuzzyThreshold, GEOMETRIC_ZOOM, gridColor, gridLabelingOn, gridLabelOrientation, gridOverlayOn, gridSpacingX, gridSpacingY, growDialog, imageA, imageActive, imageB, imageBufferA, imageBufferActive, imageBufferB, imageExtents, imageStatList, intensityDropper, less, lessB, lessG, lessR, LINEAR_ZOOM, logMagDisplay, LUTa, LUTb, m_kPatientSlice, m_kWinLevel, MAGR_HEIGHT, MAGR_MAG, MAGR_WIDTH, magSettings, maxDistance, maxExtents, modifyFlag, more, moreB, moreG, moreR, mousePressIsShiftDown, MultiFrameEyetrackerMode, nColumnCheckers, nRowCheckers, onTop, orientation, overlayOn, paintBitmap, paintBitmapBU, paintBitmapSwitch, paintBrush, paintBrushDim, paintBrushDimPrevious, paintBrushPrevious, paintBrushSize, paintBuffer, paintImage, paintImagePrevious, pixBuffer, pixBufferB, PluginEyetrackerMode, previousPaintBrush, rgbString, RGBTA, RGBTB, saveValue, saveValueB, saveValueG, saveValueR, saveX, saveY, saveZ, seedPaintBitmap, seedVal, seedValB, seedValG, seedValR, SingleFrameEyetrackerMode, sizeLimit, slice, stringOverride, time, timeSlice, toppedColor, useBComp, useGComp, useRComp, useVOI, variableThresholds, visRect, voiManager, winLevel, winLevelSet, xMod, xPG, yMod, yPG, zPG

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase
ANNOTATION, BOTH, CENTER_VOI, CUBE_BOUNDS, DEFAULT, DELETE_POINT, DROPPER_PAINT, ELLIPSE, ERASER_PAINT, IMAGE_A, IMAGE_B, imageDim, img, imgB, interpMode, INTERPOLATE_A, INTERPOLATE_B, INTERPOLATE_BOTH, lastMouseX, lastMouseY, LEVELSET, LINE, LIVEWIRE, MAG_REGION, memImageA, memImageB, MOVE, MOVE_INTERSECTION_POINT, MOVE_POINT, MOVE_VOIPOINT, NEAREST_BOTH, NEW_POINT, NEW_VOI, OUT_OF_BOUNDS, PAINT_CAN, PAINT_VASC, PAINT_VOI, POINT_VOI, POLYLINE, POLYLINE_SLICE_VOI, PROBE, PROTRACTOR, QUICK_LUT, RECTANGLE, RECTANGLE3D, resolutionX, resolutionY, RETRACE, ROTATE, SELECT, showSliceNumber, sliceString, SMOOTH, SPLIT_VOI, textColor, TRANSLATE, VOI_3D, WAND, WIN_REGION, ZOOMING_IN, ZOOMING_OUT, zoomX, zoomY

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor	Description
`ViewJComponentRegistration(ViewJFrameRegistration _frame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, ModelImage _imageB, ModelLUT _LUTb, float[] imgBufferB, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, float alphaBl)`	Constructor: ImageA and ImageB are expected to be of the same dimensionality !!
`ViewJComponentRegistration(ViewJFrameRegistrationTool _toolFrame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, ModelImage _imageB, ModelLUT _LUTb, float[] imgBufferB, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, float alphaBl)`	Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`deleteAdjRotVOIs()`	Deletes all ROTATIONCENTER and ADJMARK VOIs.
`void`	`deleteAdjustableVOIs()`	Deletes all ADJMARK VOIs.
`void`	`deletePoint(boolean isReference)`	If a point is selected of the given type (reference or adjusted) delete the point and reset the.
`void`	`deleteReferenceVOIs()`	Deletes all REFMARK VOIs.
`void`	`deleteRefRotVOIs()`	Deletes all REFMARK and ROTATIONCENTER VOIs.
`void`	`deleteVOIs()`	Deletes all VOIs.
`void`	`dispose(boolean gcFlag)`	Sets all variables to null, disposes, and garbage collects.
`protected void`	`finalize()`	Cleans up memory.
`int`	`getAdjMark()`	Returns the adjust mark flag.
`int`	`getBlue()`	accessor that returns int blue.
`int`	`getGreen()`	Accessor that returns int green.
`int[]`	`getMarkerType()`	Returns the marker type.
`int`	`getnVOI()`	Returns the number of VOIs.
`float`	`getOpacity()`	Returns the opacity used in alpha blending between the input image and the reference image.
`int`	`getRed()`	Returns int red.
`int`	`getRefMark()`	Returns the reference mark flag.
`int[]`	`getxOrg()`	Returns the X origin.
`int[]`	`getxPres()`	DOCUMENT ME!
`int[]`	`getyOrg()`	Returns the Y origin.
`int[]`	`getyPres()`	DOCUMENT ME!
`void`	`makeAdjustableVOI(WildMagic.LibFoundation.Mathematics.Vector3f adjPoint)`	Constructs reference point VOI from the refPoint passed in.
`void`	`makeReferenceVOI(WildMagic.LibFoundation.Mathematics.Vector3f refPoint)`	Constructs reference point VOI from the refPoint passed in.
`void`	`mouseClicked(java.awt.event.MouseEvent mouseEvent)`	When the mouse is clicked in the image, several different things may happen.
`void`	`mouseDragged(java.awt.event.MouseEvent mouseEvent)`	Drags an VOI real time by calling a series of translations and draws.
`void`	`mouseMoved(java.awt.event.MouseEvent mouseEvent)`	If the mode is level set, draws level sets as user moves mouse.
`void`	`mousePressed(java.awt.event.MouseEvent mouseEvent)`	Sets the mode of the program depending on the cursor mode.
`void`	`mouseReleased(java.awt.event.MouseEvent mouseEvent)`	This function sets up and draws the VOI according to the mode.
`void`	`moveVOIPosition(int deltaX, int deltaY)`	Moves VOIs to new position by deltaX and deltaY.
`void`	`moveVOITo(int id, int x, int y)`	Moves VOI with ID == id to a new position (x,y).
`void`	`paintComponent(java.awt.Graphics g)`	Paints the image and calls drawSelf for all VOIs.
`void`	`paintWindowComponent(java.awt.Graphics g, java.awt.event.MouseEvent mouseEvent)`	Paints the image and calls drawSelf for all VOIs.
`void`	`setAdjMark(boolean doAdj)`	Sets the adjusted mark flag.
`void`	`setCenter(boolean doCen)`	Sets the center point used in transformations.
`void`	`setCursorMode(int mode)`	Switches modes based on the variable mode.
`void`	`setLogMagDisplay(boolean flag)`	Sets the log magnitude display flag.
`void`	`setLUTa(ModelLUT LUT)`	Sets the model LUT for the imageA.
`void`	`setLUTb(ModelLUT LUT)`	Sets the model LUTb for the imageB.
`void`	`setMouseDrag(boolean doDrag)`	doDrag true enables the adjusted slice to respond to mouse press and drag events doDrag false restricts the adjusted slice to responding to mouse press and release events.
`void`	`setNewAlphaBlend(int value)`	Sets the alpha blending of parameter for two image displaying.
`void`	`setRefMark(boolean doRef)`	Sets the reference mark flag.

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage
calcPaintedVolume, cine, commitMask, commitMask, commitMask, commitMask, commitPaintToMask, commitPaintToUbyteMask, createImg, createImg, ctMode, disposeLocal, downSlice, draw3DVOIs, drawGradicules, drawStringBW, eraseAllPaint, fileToScreen, fileToScreenVOI, getActiveImage, getActiveImageBuffer, getActiveImageSliceBuffer, getActiveLUT, getActiveRGB, getAlphaBlend, getBandSpacing, getBrushSize, getCleanImageBufferB, getCursorMode, getFrame, getGridColor, getGridLabeling, getGridLabelOrientation, getGridOverlay, getGridSpacingX, getGridSpacingY, getHBrushSize, getImageA, getImageB, getImageBufferA, getImageBufferB, getIntensityDropper, getLUTa, getLUTb, getMaxExtents, getModifyFlag, getNumPoints, getOrientation, getOverlayOn, getPaintBitmap, getPaintBuffer, getPaintMask, getPixBuffer, getPixBufferB, getRASScannerPositionLabels, getRGBPaintComponents, getRGBTA, getRGBTB, getScannerPositionLabels, getShowMagIntensityEnabled, getSlice, getTimeSlice, getVOIHandler, getVOIManager, getxMod, getxSep, getxStart, getyMod, getySep, getyStart, getZoomMagnitudeX, getZoomMagnitudeY, isCheckerboardAnimate, isCheckerboarded, isHighlight, isMakingCheckerboard, isZeroToOneLUTAdj, loadPaintBrush, loopBandSpacing, loopBandSpacingReverse, mouseEntered, mouseExited, mousePressedPaint, mouseWheelMoved, openUDLUTandTransferFunct, paintComponentForPrinter, paintMagComponent, patientToScreen, patientToScreenVOI, performPaint, performPaint, processDefaultMouseDrag, quickSwitchBrush, readLUTandTFunctFrom, recordPanning, recordZoom, regionGrow, regionGrow, regionGrow, regionGrow, regionGrow, regionGrowColor, rememberPaintBrushSize, resetLUT, resetLUTs, resetPaintBrushSize, restartCheckerboardAnimateThread, saveLUTandTransferFunction, saveUDLUT, screenToFile, screenToFile, screenToFile, screenToFileVOI, screenToFileVOI, screenToFileVOI, setActiveImage, setAlphaBlend, setBandSpacing, setBuffers, setCenter, setCheckerboard, setCheckerboardAnimate, setCrosshairCursor, setDisplayFuzzy, setDrawVOIs, setEnabled, setEyetrackerRecordingMode, setEyetrackerRecordMode, setFrameControls, setFullScreenModeLocation, setFuzzyThreshold, setGridColor, setGridLabelingOn, setGridLabelOrientation, setGridOverlay, setGridSpacingX, setGridSpacingY, setGrowDialog, setHasThreshold1, setHasThreshold2, setHighlightColor, setImageA, setImageB, setImageBufferB, setImageColocalize, setImageExtents, setImageSlice, setIntensityDropper, setLess, setLessB, setLessG, setLessR, setMakingCheckerboard, setMaxDistance, setModifyFlag, setMore, setMoreB, setMoreG, setMoreR, setOverlay, setPaintBitmapSwitch, setPaintBrushSize, setPaintMask, setPixelInformationAtLocation, setRegionGrowVars, setRGBPaintComponents, setRGBTA, setRGBTB, setShowMagIntensity, setShowSliceNum, setSizeLimit, setSlice, setStringOverride, setThresholdColors, setThresholds, setTimeSlice, setUseVOI, setVariableThresholds, setVOIManager, setWindLevel, setxSep, setySep, setZeroToOneLUTAdj, show, show, show, showBlank, showGridOverlay, showOverlay, showRegionInfo, showRegionInfo, showRegionInfo, showStatisticsCalculator, undoLastPaint, updatePaint, updatePaintBrushCursor, upSlice, useHighlight

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUI, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateUI

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAccessibleContext, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.MouseListener
mouseEntered, mouseExited

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener
getHeight, getResolutionX, getResolutionY, getWidth, getZoomX, getZoomY

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - ROTATIONCENTER
```
public static final int ROTATIONCENTER
```
    The 3 types of markers - rotation center, reference slice, and adjusted slice.
    
    See Also:
    
    Constant Field Values
  - REFMARK
```
public static final int REFMARK
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ADJMARK
```
public static final int ADJMARK
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - OPACITY
```
public float OPACITY
```
    Opacity value used by the paint brush. value = 1.0 - opaque value = 0.25 - default (mostly see through)
  - addPointCursor
```
protected java.awt.Cursor addPointCursor
```
    DOCUMENT ME!
  - defaultCursor
```
protected java.awt.Cursor defaultCursor
```
    DOCUMENT ME!
  - magRegionCursor
```
protected java.awt.Cursor magRegionCursor
```
    Custom cursor: magnify region.
  - moveCursor
```
protected java.awt.Cursor moveCursor
```
    DOCUMENT ME!
  - pointCursor
```
protected java.awt.Cursor pointCursor
```
    DOCUMENT ME!
  - rectCursor
```
protected java.awt.Cursor rectCursor
```
    DOCUMENT ME!
  - removePointCursor
```
protected java.awt.Cursor removePointCursor
```
    DOCUMENT ME!
  - waitCursor
```
protected java.awt.Cursor waitCursor
```
    DOCUMENT ME!
  - wandCursor
```
protected java.awt.Cursor wandCursor
```
    DOCUMENT ME!
  - toolFrame
```
protected ViewJFrameRegistrationTool toolFrame
```
    Frame where component image is displayed (only for new RegistrationTool).
  - memCount
```
int memCount
```
    DOCUMENT ME!
  - adjMark
```
private int adjMark
```
    number of VOIs for adjustable slice
  - anchorPt
```
private java.awt.Point anchorPt
```
    DOCUMENT ME!
  - centerid
```
private short centerid
```
    id of rotation center
  - centerVOI
```
private VOI centerVOI
```
    center rotation VOI
  - doAdjMark
```
private boolean doAdjMark
```
    DOCUMENT ME!
  - doCenter
```
private boolean doCenter
```
    DOCUMENT ME!
  - doDrag
```
private boolean doDrag
```
    no adjusted slice movements with mouseDrag
  - doRefMark
```
private boolean doRefMark
```
    DOCUMENT ME!
  - hue
```
private float hue
```
    DOCUMENT ME!
  - id
```
private short id
```
    DOCUMENT ME!
  - markerType
```
private int[] markerType
```
    DOCUMENT ME!
  - newVOI
```
private VOI newVOI
```
    DOCUMENT ME!
  - newX
```
private int newX
```
    adjustable slice VOI.
  - newY
```
private int newY
```
    adjustable slice VOI.
  - oldFrame
```
private boolean oldFrame
```
    Used to set old or new mode of registration.
  - ptCoord
```
private float[] ptCoord
```
    DOCUMENT ME!
  - red
```
private int red
```
    DOCUMENT ME!
  - green
```
private int green
```
    DOCUMENT ME!
  - blue
```
private int blue
```
    DOCUMENT ME!
  - refMark
```
private int refMark
```
    number of VOIs for reference slice
  - rotCenterMark
```
private int rotCenterMark
```
    number of VOIs for rotation center
  - xFinish
```
private float xFinish
```
    values obtained when mouseReleased
  - yFinish
```
private float yFinish
```
    values obtained when mouseReleased
  - xOrg
```
private int[] xOrg
```
    DOCUMENT ME!
  - xPres
```
private int[] xPres
```
    DOCUMENT ME!
  - xRotation
```
private float xRotation
```
    DOCUMENT ME!
  - xStart
```
private float xStart
```
    values obtained when mousePressed
  - yStart
```
private float yStart
```
    values obtained when mousePressed
  - yOrg
```
private int[] yOrg
```
    DOCUMENT ME!
  - yPres
```
private int[] yPres
```
    DOCUMENT ME!
  - yRotation
```
private float yRotation
```
    DOCUMENT ME!
- Constructor Detail
  - ViewJComponentRegistration
```
public ViewJComponentRegistration(ViewJFrameRegistration _frame,
                                  ModelImage _imageA,
                                  ModelLUT _LUTa,
                                  float[] imgBufferA,
                                  ModelImage _imageB,
                                  ModelLUT _LUTb,
                                  float[] imgBufferB,
                                  int[] pixelBuffer,
                                  float zoom,
                                  int[] extents,
                                  boolean logMagDisplay,
                                  int _orientation,
                                  float alphaBl)
```
    Constructor: ImageA and ImageB are expected to be of the same dimensionality !!
    
    Parameters:
    
    _frame - frame where image(s) will be displayed
    
    _imageA - Model of the image that will be displayed
    
    _LUTa - LUT used to display imageA
    
    imgBufferA - storage buffer used to display image A
    
    _imageB - Model of the image that will be displayed
    
    _LUTb - LUT used to display imageB
    
    imgBufferB - storage buffer used to display image B
    
    pixelBuffer - storage buffer used to build a displayable image
    
    zoom - initial magnification of image
    
    extents - initial display dimensions of the image
    
    logMagDisplay - display log magnitude of image
    
    _orientation - orientation of the image
    
    alphaBl - DOCUMENT ME!
  - ViewJComponentRegistration
```
public ViewJComponentRegistration(ViewJFrameRegistrationTool _toolFrame,
                                  ModelImage _imageA,
                                  ModelLUT _LUTa,
                                  float[] imgBufferA,
                                  ModelImage _imageB,
                                  ModelLUT _LUTb,
                                  float[] imgBufferB,
                                  int[] pixelBuffer,
                                  float zoom,
                                  int[] extents,
                                  boolean logMagDisplay,
                                  int _orientation,
                                  float alphaBl)
```
    Constructor: ImageA and ImageB are expected to be of the same dimensionality !!
    
    Parameters:
    
    _toolFrame - frame where image(s) will be displayed
    
    _imageA - Model of the image that will be displayed
    
    _LUTa - LUT used to display imageA
    
    imgBufferA - storage buffer used to display image A
    
    _imageB - Model of the image that will be displayed
    
    _LUTb - LUT used to display imageB
    
    imgBufferB - storage buffer used to display image B
    
    pixelBuffer - storage buffer used to build a displayable image
    
    zoom - initial magnification of image
    
    extents - initial display dimensions of the image
    
    logMagDisplay - display log magnitude of image
    
    _orientation - orientation of the image
    
    alphaBl - DOCUMENT ME!
- Method Detail
  - deleteAdjRotVOIs
```
public void deleteAdjRotVOIs()
```
    Deletes all ROTATIONCENTER and ADJMARK VOIs.
  - deleteAdjustableVOIs
```
public void deleteAdjustableVOIs()
```
    Deletes all ADJMARK VOIs.
  - deletePoint
```
public void deletePoint(boolean isReference)
```
    If a point is selected of the given type (reference or adjusted) delete the point and reset the.
    
    Parameters:
    
    isReference - delete point if of this type
  - deleteReferenceVOIs
```
public void deleteReferenceVOIs()
```
    Deletes all REFMARK VOIs.
  - deleteRefRotVOIs
```
public void deleteRefRotVOIs()
```
    Deletes all REFMARK and ROTATIONCENTER VOIs.
  - deleteVOIs
```
public void deleteVOIs()
```
    Deletes all VOIs.
  - dispose
```
public void dispose(boolean gcFlag)
```
    Sets all variables to null, disposes, and garbage collects.
    
    Overrides:
    
    dispose in class ViewJComponentEditImage
    
    Parameters:
    
    gcFlag - if true garbage collector should be called.
  - getAdjMark
```
public int getAdjMark()
```
    Returns the adjust mark flag.
    
    Returns:
    
    int adjust mark flag
  - getBlue
```
public int getBlue()
```
    accessor that returns int blue.
    
    Returns:
    
    int blue component
  - getGreen
```
public int getGreen()
```
    Accessor that returns int green.
    
    Returns:
    
    int green component
  - getMarkerType
```
public int[] getMarkerType()
```
    Returns the marker type.
    
    Returns:
    
    int[] marker
  - getnVOI
```
public int getnVOI()
```
    Returns the number of VOIs.
    
    Overrides:
    
    getnVOI in class ViewJComponentEditImage
    
    Returns:
    
    int number of VOIs
  - getOpacity
```
public float getOpacity()
```
    Returns the opacity used in alpha blending between the input image and the reference image.
    
    Overrides:
    
    getOpacity in class ViewJComponentEditImage
    
    Returns:
    
    float opacity
  - getRed
```
public int getRed()
```
    Returns int red.
    
    Returns:
    
    int red component
  - getRefMark
```
public int getRefMark()
```
    Returns the reference mark flag.
    
    Returns:
    
    int reference mark flag
  - getxOrg
```
public int[] getxOrg()
```
    Returns the X origin.
    
    Returns:
    
    int[] the X origin
  - getxPres
```
public int[] getxPres()
```
    DOCUMENT ME!
    
    Returns:
    
    int[] list of x coordinates
  - getyOrg
```
public int[] getyOrg()
```
    Returns the Y origin.
    
    Returns:
    
    int[] the Y origin
  - getyPres
```
public int[] getyPres()
```
    DOCUMENT ME!
    
    Returns:
    
    int[] list of y coordinates
  - makeAdjustableVOI
```
public void makeAdjustableVOI(WildMagic.LibFoundation.Mathematics.Vector3f adjPoint)
```
    Constructs reference point VOI from the refPoint passed in.
    
    Parameters:
    
    adjPoint - a point VOI is generated from the 3D point
  - makeReferenceVOI
```
public void makeReferenceVOI(WildMagic.LibFoundation.Mathematics.Vector3f refPoint)
```
    Constructs reference point VOI from the refPoint passed in.
    
    Parameters:
    
    refPoint - a point VOI is generated from the 3D point
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent mouseEvent)
```
    When the mouse is clicked in the image, several different things may happen. If a Region of Interest (VOI) is selected and the click count is 2, a VOI dialog should pop up. If the click count is 1 and the mouse is in an VOI, it should select the VOI. In all other cases, a click within the image but not in an VOI should deselect all VOIs.
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseClicked in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggers function; contains click count
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent mouseEvent)
```
    Drags an VOI real time by calling a series of translations and draws. Once the mouse is released, the positions are reset permenantly. Also rubberbands points if the cursor indicates it by calling rubberbandVOI.
    
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseDragged in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered function
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent mouseEvent)
```
    Sets the mode of the program depending on the cursor mode. If the mode is move, activates the contour or line and enables the delete button.
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Overrides:
    
    mousePressed in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered function
  - mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent mouseEvent)
```
    If the mode is level set, draws level sets as user moves mouse. Otherwise, changes the cursor depending on where the mouse is in relation to the VOI.
    
    Specified by:
    
    mouseMoved in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseMoved in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered the function
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent mouseEvent)
```
    This function sets up and draws the VOI according to the mode.
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseReleased in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered function
  - moveVOIPosition
```
public void moveVOIPosition(int deltaX,
                            int deltaY)
```
    Moves VOIs to new position by deltaX and deltaY.
    
    Parameters:
    
    deltaX - distance VOI moves in the X direction
    
    deltaY - distance VOI moves in the Y direction
  - moveVOITo
```
public void moveVOITo(int id,
                      int x,
                      int y)
```
    Moves VOI with ID == id to a new position (x,y).
    
    Parameters:
    
    id - DOCUMENT ME!
    
    x - x coordinate of new position
    
    y - y coordinate of new position
  - paintComponent
```
public void paintComponent(java.awt.Graphics g)
```
    Paints the image and calls drawSelf for all VOIs.
    
    Overrides:
    
    paintComponent in class ViewJComponentEditImage
    
    Parameters:
    
    g - graphics
  - paintWindowComponent
```
public void paintWindowComponent(java.awt.Graphics g,
                                 java.awt.event.MouseEvent mouseEvent)
```
    Paints the image and calls drawSelf for all VOIs.
    
    Parameters:
    
    g - graphics
    
    mouseEvent - DOCUMENT ME!
  - setAdjMark
```
public void setAdjMark(boolean doAdj)
```
    Sets the adjusted mark flag.
    
    Parameters:
    
    doAdj - DOCUMENT ME!
  - setCenter
```
public void setCenter(boolean doCen)
```
    Sets the center point used in transformations.
    
    Parameters:
    
    doCen - if true construct a center point VOI
  - setLogMagDisplay
```
public void setLogMagDisplay(boolean flag)
```
    Sets the log magnitude display flag.
    
    Overrides:
    
    setLogMagDisplay in class ViewJComponentEditImage
    
    Parameters:
    
    flag - if true display log of the Magnitude of the complex image
  - setLUTa
```
public void setLUTa(ModelLUT LUT)
```
    Sets the model LUT for the imageA.
    
    Overrides:
    
    setLUTa in class ViewJComponentEditImage
    
    Parameters:
    
    LUT - the model LUT
  - setLUTb
```
public void setLUTb(ModelLUT LUT)
```
    Sets the model LUTb for the imageB.
    
    Overrides:
    
    setLUTb in class ViewJComponentEditImage
    
    Parameters:
    
    LUT - the model LUT
  - setCursorMode
```
public void setCursorMode(int mode)
```
    Switches modes based on the variable mode. Sets rubberband activity and the cursor.
    
    Overrides:
    
    setCursorMode in class ViewJComponentEditImage
    
    Parameters:
    
    mode - the integer mode
  - setMouseDrag
```
public void setMouseDrag(boolean doDrag)
```
    doDrag true enables the adjusted slice to respond to mouse press and drag events doDrag false restricts the adjusted slice to responding to mouse press and release events.
    
    Parameters:
    
    doDrag - DOCUMENT ME!
  - setNewAlphaBlend
```
public void setNewAlphaBlend(int value)
```
    Sets the alpha blending of parameter for two image displaying.
    
    Parameters:
    
    value - amount [0,100] that is the percentage of Image A to be displayed
  - setRefMark
```
public void setRefMark(boolean doRef)
```
    Sets the reference mark flag.
    
    Parameters:
    
    doRef - DOCUMENT ME!
  - finalize
```
protected void finalize()
```
    Cleans up memory.
    
    Overrides:
    
    finalize in class ViewJComponentEditImage

Class ViewJComponentRegistration

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage

Methods inherited from class gov.nih.mipav.view.ViewJComponentBase

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.MouseListener

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Field Detail

serialVersionUID

ROTATIONCENTER

REFMARK

ADJMARK

OPACITY

addPointCursor

defaultCursor

magRegionCursor

moveCursor

pointCursor

rectCursor

removePointCursor

waitCursor

wandCursor

toolFrame

memCount

adjMark

anchorPt

centerid

centerVOI

doAdjMark

doCenter

doDrag

doRefMark

hue

id

markerType

newVOI

newX

newY

oldFrame

ptCoord

red

green

blue

refMark

rotCenterMark

xFinish

yFinish

xOrg

xPres

xRotation

xStart

yStart

yOrg

yPres

yRotation

Constructor Detail

ViewJComponentRegistration

ViewJComponentRegistration

Method Detail

deleteAdjRotVOIs

deleteAdjustableVOIs

deletePoint

deleteReferenceVOIs

deleteRefRotVOIs

deleteVOIs

dispose