java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogFRAP

All Implemented Interfaces:

AlgorithmInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogFRAP
extends JDialogBase
implements AlgorithmInterface, java.awt.event.ItemListener, java.awt.event.WindowListener
```
Dialog to get user input Fluorescence recovery after photobleaching Algorithms are executed in their own thread.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.ButtonGroup`	`analysisGroup`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`backgroundButton`	DOCUMENT ME!
`private int`	`backgroundIndex`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`bandButton`	DOCUMENT ME!
`private int`	`bleachedROIShape`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`blueButton`	DOCUMENT ME!
`private static int`	`CIRCLE`	DOCUMENT ME!
`private static int`	`CIRCLE_2D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`circleButton`	DOCUMENT ME!
`private static int`	`CLOSED_BEZIER`	DOCUMENT ME!
`private static int`	`CLOSED_POLYLINE`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`colorGroup`	DOCUMENT ME!
`private int`	`colorsPresent`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxCostFunct`	DOCUMENT ME!
`private ViewJComponentEditImage`	`componentImage`	DOCUMENT ME!
`private int`	`cost`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`createRegCheckBox`	DOCUMENT ME!
`private boolean`	`createRegImage`	DOCUMENT ME!
`private double`	`diffusion`	DOCUMENT ME!
`private static int`	`ELLIPSE`	DOCUMENT ME!
`private FileInfoLSM`	`fileInfo`	DOCUMENT ME!
`private FileInfoImageXML`	`fileInfoImageXML`	DOCUMENT ME!
`private boolean`	`findDiffusion`
`private javax.swing.JCheckBox`	`findDiffusionCheckBox`
`private int`	`firstSliceAfterBleach`	DOCUMENT ME!
`private int`	`firstSliceNum`	DOCUMENT ME!
`private javax.swing.JTextField`	`firstSliceNumText`	DOCUMENT ME!
`private AlgorithmFRAP`	`frapAlgo`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`greenButton`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private double[]`	`knotX`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelCost`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelDiffusion`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelFirstSlice`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelImage`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelRef`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelShape`	DOCUMENT ME!
`private double`	`maxB`	DOCUMENT ME!
`private double`	`maxG`	DOCUMENT ME!
`private double`	`maxR`	DOCUMENT ME!
`private double`	`minB`	DOCUMENT ME!
`private double`	`minG`	DOCUMENT ME!
`private double`	`minR`	DOCUMENT ME!
`private int`	`model`	DOCUMENT ME!
`private static int`	`NARROW_BAND_2D`	Diffusion models.
`private int`	`nBoundingVOIs`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`oneDButton`	DOCUMENT ME!
`private boolean`	`paramVary`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`paramVaryCheckBox`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`photoBleachedButton`	DOCUMENT ME!
`private int`	`photoBleachedIndex`	DOCUMENT ME!
`private static int`	`PURE_1D`	DOCUMENT ME!
`private static int`	`RECTANGLE`	Bleached ROI shapes.
`private javax.swing.JRadioButton`	`redButton`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`regCheckBox`	DOCUMENT ME!
`private boolean`	`register`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private static int`	`SINGLE_EXPONENTIAL`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`singleExpButton`	DOCUMENT ME!
`private javax.swing.JTextField`	`textDiffusion`	DOCUMENT ME!
`private boolean`	`useBlue`	DOCUMENT ME!
`private boolean`	`useGreen`	DOCUMENT ME!
`private boolean`	`useRed`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`VOIGroup`	DOCUMENT ME!
`private ViewVOIVector`	`VOIs`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`wholeOrganButton`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`wholeOrganCheckBox`	DOCUMENT ME!
`private int`	`wholeOrganIndex`	DOCUMENT ME!
`private boolean`	`wholeOrganNormalize`	DOCUMENT ME!
`private int`	`xPos`	DOCUMENT ME!
`private int`	`yPos`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogFRAP(ModelImage image)`	Creates a new JDialogFRAP object.
`JDialogFRAP(java.awt.Frame theParentFrame, ModelImage im)`	Creates new dialog.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	DOCUMENT ME!
`private void`	`init()`	Initializes GUI components and displays dialog.
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	itemStateChanged.
`void`	`setCost(int cost)`	DOCUMENT ME!
`void`	`setfirstSliceNum(int firstSliceNumber)`	Accessor to set firstSliceNum.
`void`	`setRegister(boolean register)`	DOCUMENT ME!
`void`	`setUseBlue(boolean useBlue)`	DOCUMENT ME!
`void`	`setUseGreen(boolean useGreen)`	DOCUMENT ME!
`void`	`setUseRed(boolean useRed)`	DOCUMENT ME!
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Disposes of error dialog, then frame.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.WindowListener
windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - RECTANGLE
```
private static final int RECTANGLE
```
    Bleached ROI shapes.
    
    See Also:
    
    Constant Field Values
  - ELLIPSE
```
private static final int ELLIPSE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CLOSED_POLYLINE
```
private static final int CLOSED_POLYLINE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CLOSED_BEZIER
```
private static final int CLOSED_BEZIER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CIRCLE
```
private static final int CIRCLE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - NARROW_BAND_2D
```
private static final int NARROW_BAND_2D
```
    Diffusion models.
    
    See Also:
    
    Constant Field Values
  - CIRCLE_2D
```
private static final int CIRCLE_2D
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - PURE_1D
```
private static final int PURE_1D
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SINGLE_EXPONENTIAL
```
private static final int SINGLE_EXPONENTIAL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - analysisGroup
```
private javax.swing.ButtonGroup analysisGroup
```
    DOCUMENT ME!
  - backgroundButton
```
private javax.swing.JRadioButton backgroundButton
```
    DOCUMENT ME!
  - backgroundIndex
```
private int backgroundIndex
```
    DOCUMENT ME!
  - bandButton
```
private javax.swing.JRadioButton bandButton
```
    DOCUMENT ME!
  - bleachedROIShape
```
private int bleachedROIShape
```
    DOCUMENT ME!
  - blueButton
```
private javax.swing.JRadioButton blueButton
```
    DOCUMENT ME!
  - circleButton
```
private javax.swing.JRadioButton circleButton
```
    DOCUMENT ME!
  - colorGroup
```
private javax.swing.ButtonGroup colorGroup
```
    DOCUMENT ME!
  - colorsPresent
```
private int colorsPresent
```
    DOCUMENT ME!
  - comboBoxCostFunct
```
private javax.swing.JComboBox comboBoxCostFunct
```
    DOCUMENT ME!
  - componentImage
```
private ViewJComponentEditImage componentImage
```
    DOCUMENT ME!
  - cost
```
private int cost
```
    DOCUMENT ME!
  - createRegCheckBox
```
private javax.swing.JCheckBox createRegCheckBox
```
    DOCUMENT ME!
  - createRegImage
```
private boolean createRegImage
```
    DOCUMENT ME!
  - diffusion
```
private double diffusion
```
    DOCUMENT ME!
  - fileInfo
```
private FileInfoLSM fileInfo
```
    DOCUMENT ME!
  - fileInfoImageXML
```
private FileInfoImageXML fileInfoImageXML
```
    DOCUMENT ME!
  - firstSliceAfterBleach
```
private int firstSliceAfterBleach
```
    DOCUMENT ME!
  - firstSliceNum
```
private int firstSliceNum
```
    DOCUMENT ME!
  - firstSliceNumText
```
private javax.swing.JTextField firstSliceNumText
```
    DOCUMENT ME!
  - frapAlgo
```
private AlgorithmFRAP frapAlgo
```
    DOCUMENT ME!
  - greenButton
```
private javax.swing.JRadioButton greenButton
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - knotX
```
private double[] knotX
```
    DOCUMENT ME!
  - labelCost
```
private javax.swing.JLabel labelCost
```
    DOCUMENT ME!
  - labelDiffusion
```
private javax.swing.JLabel labelDiffusion
```
    DOCUMENT ME!
  - labelFirstSlice
```
private javax.swing.JLabel labelFirstSlice
```
    DOCUMENT ME!
  - labelImage
```
private javax.swing.JLabel labelImage
```
    DOCUMENT ME!
  - labelRef
```
private javax.swing.JLabel labelRef
```
    DOCUMENT ME!
  - labelShape
```
private javax.swing.JLabel labelShape
```
    DOCUMENT ME!
  - maxR
```
private double maxR
```
    DOCUMENT ME!
  - maxG
```
private double maxG
```
    DOCUMENT ME!
  - maxB
```
private double maxB
```
    DOCUMENT ME!
  - minR
```
private double minR
```
    DOCUMENT ME!
  - minG
```
private double minG
```
    DOCUMENT ME!
  - minB
```
private double minB
```
    DOCUMENT ME!
  - model
```
private int model
```
    DOCUMENT ME!
  - nBoundingVOIs
```
private int nBoundingVOIs
```
    DOCUMENT ME!
  - oneDButton
```
private javax.swing.JRadioButton oneDButton
```
    DOCUMENT ME!
  - paramVary
```
private boolean paramVary
```
    DOCUMENT ME!
  - paramVaryCheckBox
```
private javax.swing.JCheckBox paramVaryCheckBox
```
    DOCUMENT ME!
  - photoBleachedButton
```
private javax.swing.JRadioButton photoBleachedButton
```
    DOCUMENT ME!
  - photoBleachedIndex
```
private int photoBleachedIndex
```
    DOCUMENT ME!
  - redButton
```
private javax.swing.JRadioButton redButton
```
    DOCUMENT ME!
  - regCheckBox
```
private javax.swing.JCheckBox regCheckBox
```
    DOCUMENT ME!
  - register
```
private boolean register
```
    DOCUMENT ME!
  - singleExpButton
```
private javax.swing.JRadioButton singleExpButton
```
    DOCUMENT ME!
  - textDiffusion
```
private javax.swing.JTextField textDiffusion
```
    DOCUMENT ME!
  - useBlue
```
private boolean useBlue
```
    DOCUMENT ME!
  - useGreen
```
private boolean useGreen
```
    DOCUMENT ME!
  - useRed
```
private boolean useRed
```
    DOCUMENT ME!
  - VOIGroup
```
private javax.swing.ButtonGroup VOIGroup
```
    DOCUMENT ME!
  - VOIs
```
private ViewVOIVector VOIs
```
    DOCUMENT ME!
  - wholeOrganButton
```
private javax.swing.JRadioButton wholeOrganButton
```
    DOCUMENT ME!
  - wholeOrganCheckBox
```
private javax.swing.JCheckBox wholeOrganCheckBox
```
    DOCUMENT ME!
  - wholeOrganIndex
```
private int wholeOrganIndex
```
    DOCUMENT ME!
  - wholeOrganNormalize
```
private boolean wholeOrganNormalize
```
    DOCUMENT ME!
  - xPos
```
private int xPos
```
    DOCUMENT ME!
  - yPos
```
private int yPos
```
    DOCUMENT ME!
  - findDiffusionCheckBox
```
private javax.swing.JCheckBox findDiffusionCheckBox
```
  - findDiffusion
```
private boolean findDiffusion
```
- Constructor Detail
  - JDialogFRAP
```
public JDialogFRAP(ModelImage image)
```
    Creates a new JDialogFRAP object.
    
    Parameters:
    
    image - DOCUMENT ME!
  - JDialogFRAP
```
public JDialogFRAP(java.awt.Frame theParentFrame,
                   ModelImage im)
```
    Creates new dialog.
    
    Parameters:
    
    theParentFrame - Parent frame
    
    im - Source image
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    itemStateChanged.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    event - DOCUMENT ME!
  - setCost
```
public void setCost(int cost)
```
    DOCUMENT ME!
    
    Parameters:
    
    cost - DOCUMENT ME!
  - setfirstSliceNum
```
public void setfirstSliceNum(int firstSliceNumber)
```
    Accessor to set firstSliceNum.
    
    Parameters:
    
    firstSliceNumber - number of wholeOrgan slice
  - setRegister
```
public void setRegister(boolean register)
```
    DOCUMENT ME!
    
    Parameters:
    
    register - DOCUMENT ME!
  - setUseBlue
```
public void setUseBlue(boolean useBlue)
```
    DOCUMENT ME!
    
    Parameters:
    
    useBlue - DOCUMENT ME!
  - setUseGreen
```
public void setUseGreen(boolean useGreen)
```
    DOCUMENT ME!
    
    Parameters:
    
    useGreen - DOCUMENT ME!
  - setUseRed
```
public void setUseRed(boolean useRed)
```
    DOCUMENT ME!
    
    Parameters:
    
    useRed - DOCUMENT ME!
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Disposes of error dialog, then frame. Sets cancelled to true.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class JDialogBase
    
    Parameters:
    
    event - DOCUMENT ME!
  - callAlgorithm
```
protected void callAlgorithm()
```
    DOCUMENT ME!
  - init
```
private void init()
```
    Initializes GUI components and displays dialog.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.

Class JDialogFRAP

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.WindowListener

Field Detail

serialVersionUID

RECTANGLE

ELLIPSE

CLOSED_POLYLINE

CLOSED_BEZIER

CIRCLE

NARROW_BAND_2D

CIRCLE_2D

PURE_1D

SINGLE_EXPONENTIAL

analysisGroup

backgroundButton

backgroundIndex

bandButton

bleachedROIShape

blueButton

circleButton

colorGroup

colorsPresent

comboBoxCostFunct

componentImage

cost

createRegCheckBox

createRegImage

diffusion

fileInfo

fileInfoImageXML

firstSliceAfterBleach

firstSliceNum

firstSliceNumText

frapAlgo

greenButton

image

knotX

labelCost

labelDiffusion

labelFirstSlice

labelImage

labelRef

labelShape

maxR

maxG

maxB

minR

minG

minB

model

nBoundingVOIs

oneDButton

paramVary

paramVaryCheckBox

photoBleachedButton

photoBleachedIndex

redButton