java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, VOIVectorListener, VOIStatisticList, DialogDefaultsInterface, ActionDiscovery, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.TreeSelectionListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogVOILogicalOperations
extends JDialogScriptableBase
implements AlgorithmInterface, VOIStatisticList, VOIVectorListener, javax.swing.event.TreeSelectionListener, ActionDiscovery
```
Author:

pandyan This dialog and utility allows for logical operations of VOIs

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`class`	`JDialogVOILogicalOperations.JPanelAddRemoveVOI`	controllas the lists between left and right side.
`class`	`JDialogVOILogicalOperations.JPanelImageOptions`
`class`	`JDialogVOILogicalOperations.JPanelLogicalOptions`
`class`	`JDialogVOILogicalOperations.VOIHighlighter`	An active listener for VOIEvents and ListSelectionEvents, this class will ensure the selected state of the VOI and its name in a dialog's list is the same.
`private class`	`JDialogVOILogicalOperations.VOITreeRenderer`

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private JDialogVOILogicalOperations.JPanelAddRemoveVOI`	`addremove`	Panel to push/pull VOIs from full list to selectable list.
`private AlgorithmVOILogicalOperations`	`alg`	algorithm
`private javax.swing.JRadioButton`	`and`	radio button
`protected ModelImage`	`clonedImage`	image and cloned image
`private javax.swing.JRadioButton`	`createMaskImage`	radio button
`private javax.swing.JRadioButton`	`createVoiImage`	radio button
`private boolean`	`doVOIImage`	flag indicating whether output should be VOI image or mask image
`protected javax.swing.JTabbedPane`	`everything`	Tabbed pane that holds all components.
`private javax.swing.border.Border`	`frameBorder`
`private JDialogVOILogicalOperations.VOIHighlighter`	`highlighter`	Operator to provide listener access... could be done by /this/
`private static javax.swing.Icon`	`ICON_LINE`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_MEDICAL_FRAME`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_POINT`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_POLYGON`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_POLYLINE`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_PROTRACTOR`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_X_AXIS`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_Y_AXIS`	DOCUMENT ME!
`private static javax.swing.Icon`	`ICON_Z_AXIS`	DOCUMENT ME!
`protected ModelImage`	`image`	image and cloned image
`private javax.swing.JPanel`	`imageOptionsPanel`	panels
`(package private) int`	`index`
`private javax.swing.JScrollPane`	`jsp`
`(package private) int`	`logicalOperation`
`private javax.swing.JPanel`	`logicalOptionsPanel`	panels
`private javax.swing.JRadioButton`	`or`	radio button
`(package private) ViewVOIVector`	`processList`
`private javax.swing.tree.DefaultMutableTreeNode`	`selectedRoot`	DOCUMENT ME!
`private VOI`	`selectedVOI`
`private javax.swing.tree.DefaultTreeModel`	`selectedVOIModel`	The tree of VOIs, composed of an image with children VOIs
`private javax.swing.JTree`	`selectedVoiTree`
`private javax.swing.tree.DefaultMutableTreeNode`	`sourceRoot`	DOCUMENT ME!
`private javax.swing.tree.DefaultTreeModel`	`sourceVoiModel`	The tree of VOIs, composed of an image with children VOIs
`private javax.swing.JTree`	`sourceVoiTree`	The graphical representation of voiModel
`private boolean`	`treeSelectionChange`
`private boolean`	`updateTree`
`protected ViewUserInterface`	`userInterface`
`protected VOIHandlerInterface`	`voiHandler`
`private javax.swing.JRadioButton`	`xor`	radio button

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface gov.nih.mipav.model.structures.VOIStatisticList
areaDescription, asymmetryIndexDescription, avgIntensity, axisDescription, circularityDescription, deviationDescription, eccentricityDescription, fractalDimensionBoxCountDescription, fractalDimensionEuclideanDistanceDescription, geometricCenterDescription, invariantMoment1Description, invariantMoment2Description, invariantMoment3Description, invariantMoment4Description, invariantMoment5Description, invariantMoment6Description, invariantMoment7Description, kurtosisDescription, largestDistanceDescription, largestSliceDistanceDescription, majorAxisDescription, massCenterDescription, maxIntensity, maxWidthDescription, meanCurvatureDescription, meanNegativeCurvatureDescription, median, minIntensity, minorAxisDescription, mode, modeCount, numberOfIndentationsCurvatureDescription, numberOfIndentationsHullDescription, numberOfStatistics, perimeterDescription, quantityDescription, skewnessDescription, solidityDescription, statisticDescription, stdDevCurvatureDescription, sumIntensities, surfaceAreaDescription, volumeDescription

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

JDialogVOILogicalOperations(VOIHandlerInterface voiHandler, VOIVector voiList)
constructor

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent e)`
`void`	`addedVOI(VOIVectorEvent voiEvent)`	resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	Called after an algorithm this listener is registered to exits (maybe successfully, maybe not).
`protected void`	`buildDialog(VOIVector voiList)`	Builds the dialog
`protected javax.swing.JPanel`	`buildOKCancelPanel()`	creates the panel which consists of the OKAY button and the Cancel button.
`private javax.swing.JPanel`	`buildSelectedListing()`	creates the visual display in which to list all selected directories in the directory tree.
`private javax.swing.JPanel`	`buildSourceListingPanel(VOIVector VOIlist)`	Creates the panel holding the directory tree.
`private javax.swing.JPanel`	`buildSourcePanel(VOIVector VOIlist)`	creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
`protected javax.swing.JPanel`	`buildVOIPanel(VOIVector VOIlist)`	creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
`protected javax.swing.JTree`	`buildVOITree()`	DOCUMENT ME!
`protected void`	`callAlgorithm()`	Starts the algorithm.
`protected void`	`cleanUpAndDispose()`	Clean up some things done by the dialog which may affect other parts of MIPAV.
`ParameterTable`	`createInputParameters()`	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in `#setGUIFromParams()`).
`ParameterTable`	`createOutputParameters()`	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
`ActionMetadata`	`getActionMetadata()`	Return meta-information about this discoverable action for categorization and labeling purposes.
`java.lang.String`	`getOutputImageName(java.lang.String imageParamName)`	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
`boolean`	`isActionComplete()`	Returns whether the action has successfully completed its execution.
`private void`	`printTree(javax.swing.tree.TreeModel model, java.lang.Object parent)`
`void`	`removedVOI(VOIVectorEvent voiEvent)`	resets the volumes list to the current VOIVector. removes the highlighter from the removed VOI.
`void`	`setDoVOIImage(boolean doVOIImage)`
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setLogicalOperation(int logicalOperation)`
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.
`void`	`updateTree()`
`void`	`updateVOI(VOI _voi, ModelImage img)`	Updates the dialog based on the VOI passed in.
`void`	`valueChanged(javax.swing.event.TreeSelectionEvent e)`	Updates the ViewJFrameImage when a VOI/contour is selected.
`void`	`vectorSelected(VOIVectorEvent voiEvent)`	un-implemented.
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Disposes of error dialog, then frame.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun

- Field Detail
  - image
```
protected ModelImage image
```
    image and cloned image
  - clonedImage
```
protected ModelImage clonedImage
```
    image and cloned image
  - userInterface
```
protected ViewUserInterface userInterface
```
  - everything
```
protected javax.swing.JTabbedPane everything
```
    Tabbed pane that holds all components.
  - highlighter
```
private JDialogVOILogicalOperations.VOIHighlighter highlighter
```
    Operator to provide listener access... could be done by /this/
  - addremove
```
private JDialogVOILogicalOperations.JPanelAddRemoveVOI addremove
```
    Panel to push/pull VOIs from full list to selectable list.
  - alg
```
private AlgorithmVOILogicalOperations alg
```
    algorithm
  - logicalOptionsPanel
```
private javax.swing.JPanel logicalOptionsPanel
```
    panels
  - imageOptionsPanel
```
private javax.swing.JPanel imageOptionsPanel
```
    panels
  - and
```
private javax.swing.JRadioButton and
```
    radio button
  - or
```
private javax.swing.JRadioButton or
```
    radio button
  - xor
```
private javax.swing.JRadioButton xor
```
    radio button
  - createVoiImage
```
private javax.swing.JRadioButton createVoiImage
```
    radio button
  - createMaskImage
```
private javax.swing.JRadioButton createMaskImage
```
    radio button
  - doVOIImage
```
private boolean doVOIImage
```
    flag indicating whether output should be VOI image or mask image
  - sourceRoot
```
private javax.swing.tree.DefaultMutableTreeNode sourceRoot
```
    DOCUMENT ME!
  - selectedRoot
```
private javax.swing.tree.DefaultMutableTreeNode selectedRoot
```
    DOCUMENT ME!
  - sourceVoiModel
```
private javax.swing.tree.DefaultTreeModel sourceVoiModel
```
    The tree of VOIs, composed of an image with children VOIs
  - selectedVOIModel
```
private javax.swing.tree.DefaultTreeModel selectedVOIModel
```
    The tree of VOIs, composed of an image with children VOIs
  - sourceVoiTree
```
private javax.swing.JTree sourceVoiTree
```
    The graphical representation of voiModel
  - selectedVoiTree
```
private javax.swing.JTree selectedVoiTree
```
  - ICON_POLYGON
```
private static javax.swing.Icon ICON_POLYGON
```
    DOCUMENT ME!
  - ICON_POLYLINE
```
private static javax.swing.Icon ICON_POLYLINE
```
    DOCUMENT ME!
  - ICON_POINT
```
private static javax.swing.Icon ICON_POINT
```
    DOCUMENT ME!
  - ICON_LINE
```
private static javax.swing.Icon ICON_LINE
```
    DOCUMENT ME!
  - ICON_MEDICAL_FRAME
```
private static javax.swing.Icon ICON_MEDICAL_FRAME
```
    DOCUMENT ME!
  - ICON_X_AXIS
```
private static javax.swing.Icon ICON_X_AXIS
```
    DOCUMENT ME!
  - ICON_Y_AXIS
```
private static javax.swing.Icon ICON_Y_AXIS
```
    DOCUMENT ME!
  - ICON_Z_AXIS
```
private static javax.swing.Icon ICON_Z_AXIS
```
    DOCUMENT ME!
  - ICON_PROTRACTOR
```
private static javax.swing.Icon ICON_PROTRACTOR
```
    DOCUMENT ME!
  - frameBorder
```
private javax.swing.border.Border frameBorder
```
  - jsp
```
private javax.swing.JScrollPane jsp
```
  - treeSelectionChange
```
private boolean treeSelectionChange
```
  - updateTree
```
private boolean updateTree
```
  - voiHandler
```
protected VOIHandlerInterface voiHandler
```
  - selectedVOI
```
private VOI selectedVOI
```
  - index
```
int index
```
  - logicalOperation
```
int logicalOperation
```
  - processList
```
ViewVOIVector processList
```
- Constructor Detail
  - JDialogVOILogicalOperations
```
public JDialogVOILogicalOperations(VOIHandlerInterface voiHandler,
                                   VOIVector voiList)
```
    constructor
    
    Parameters:
    
    voiList -
- Method Detail
  - cleanUpAndDispose
```
protected void cleanUpAndDispose()
```
    Clean up some things done by the dialog which may affect other parts of MIPAV.
  - buildDialog
```
protected void buildDialog(VOIVector voiList)
```
    Builds the dialog
    
    Parameters:
    
    voiList -
  - buildOKCancelPanel
```
protected javax.swing.JPanel buildOKCancelPanel()
```
    creates the panel which consists of the OKAY button and the Cancel button.
  - vectorSelected
```
public void vectorSelected(VOIVectorEvent voiEvent)
```
    un-implemented.
    
    Specified by:
    
    vectorSelected in interface VOIVectorListener
    
    Parameters:
    
    voiEvent - DOCUMENT ME!
  - addedVOI
```
public void addedVOI(VOIVectorEvent voiEvent)
```
    resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
    
    Specified by:
    
    addedVOI in interface VOIVectorListener
    
    Parameters:
    
    voiEvent - DOCUMENT ME!
  - removedVOI
```
public void removedVOI(VOIVectorEvent voiEvent)
```
    resets the volumes list to the current VOIVector. removes the highlighter from the removed VOI.
    
    Specified by:
    
    removedVOI in interface VOIVectorListener
    
    Parameters:
    
    voiEvent - DOCUMENT ME!
  - buildSourceListingPanel
```
private javax.swing.JPanel buildSourceListingPanel(VOIVector VOIlist)
```
    Creates the panel holding the directory tree.
    
    Parameters:
    
    VOIlist - DOCUMENT ME!
    
    Returns:
    
    Panel.
  - updateTree
```
public void updateTree()
```
  - buildVOITree
```
protected javax.swing.JTree buildVOITree()
```
    DOCUMENT ME!
  - buildSourcePanel
```
private javax.swing.JPanel buildSourcePanel(VOIVector VOIlist)
```
    creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
    
    Parameters:
    
    VOIlist - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - buildSelectedListing
```
private javax.swing.JPanel buildSelectedListing()
```
    creates the visual display in which to list all selected directories in the directory tree. The panel is 240 pixels wide though that is supposed to be the minimum size
    
    Returns:
    
    the panel which is to hold the list of selected items
  - buildVOIPanel
```
protected javax.swing.JPanel buildVOIPanel(VOIVector VOIlist)
```
    creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories. Also includes the file-format selection for the output file.
    
    Parameters:
    
    VOIlist - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - callAlgorithm
```
protected void callAlgorithm()
```
    Description copied from class: JDialogScriptableBase
    
    Starts the algorithm. Already exists in most algorithm dialogs. Should be called during scripted execution and regular operation.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Description copied from class: JDialogScriptableBase
    
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Description copied from class: JDialogScriptableBase
    
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    Description copied from interface: AlgorithmInterface
    
    Called after an algorithm this listener is registered to exits (maybe successfully, maybe not). If the algorithm is run in a separate thread, this call will be made within that thread. If not, this call will be made from that same, shared thread.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - the algorithm which has just completed
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent e)
```
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Description copied from class: JDialogBase
    
    Disposes of error dialog, then frame. Sets cancelled to true.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class JDialogBase
    
    Parameters:
    
    event - WindowEvent
  - printTree
```
private void printTree(javax.swing.tree.TreeModel model,
                       java.lang.Object parent)
```
  - valueChanged
```
public void valueChanged(javax.swing.event.TreeSelectionEvent e)
```
    Updates the ViewJFrameImage when a VOI/contour is selected.
    
    Specified by:
    
    valueChanged in interface javax.swing.event.TreeSelectionListener
    
    Parameters:
    
    e - TreeSelectionEvent
  - updateVOI
```
public void updateVOI(VOI _voi,
                      ModelImage img)
```
    Updates the dialog based on the VOI passed in.
    
    Parameters:
    
    _voi - VOI whose properties we want to calculate.
    
    img - Image where voi is to be updated
  - createInputParameters
```
public ParameterTable createInputParameters()
```
    Description copied from interface: ActionDiscovery
    
    Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in #setGUIFromParams()).
    
    Specified by:
    
    createInputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the inputs of this algorithm.
  - createOutputParameters
```
public ParameterTable createOutputParameters()
```
    Description copied from interface: ActionDiscovery
    
    Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
    
    Specified by:
    
    createOutputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the outputs of this algorithm.
  - getActionMetadata
```
public ActionMetadata getActionMetadata()
```
    Description copied from interface: ActionDiscovery
    
    Return meta-information about this discoverable action for categorization and labeling purposes.
    
    Specified by:
    
    getActionMetadata in interface ActionDiscovery
    
    Returns:
    
    Metadata for this action.
  - getOutputImageName
```
public java.lang.String getOutputImageName(java.lang.String imageParamName)
```
    Description copied from interface: ActionDiscovery
    
    Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
    
    Specified by:
    
    getOutputImageName in interface ActionDiscovery
    
    Parameters:
    
    imageParamName - The output image parameter label for which to get the image name.
    
    Returns:
    
    The image name of the requested output image parameter label.
  - isActionComplete
```
public boolean isActionComplete()
```
    Description copied from interface: ActionDiscovery
    
    Returns whether the action has successfully completed its execution.
    
    Specified by:
    
    isActionComplete in interface ActionDiscovery
    
    Returns:
    
    True, if the action is complete. False, if the action failed or is still running.
  - setDoVOIImage
```
public void setDoVOIImage(boolean doVOIImage)
```
  - setLogicalOperation
```
public void setLogicalOperation(int logicalOperation)
```

Class JDialogVOILogicalOperations

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface gov.nih.mipav.model.structures.VOIStatisticList

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

Field Detail

image

clonedImage

userInterface

everything

highlighter

addremove

alg

logicalOptionsPanel

imageOptionsPanel

and

or

xor

createVoiImage

createMaskImage

doVOIImage

sourceRoot

selectedRoot

sourceVoiModel

selectedVOIModel

sourceVoiTree

selectedVoiTree

ICON_POLYGON

ICON_POLYLINE

ICON_POINT

ICON_LINE

ICON_MEDICAL_FRAME

ICON_X_AXIS

ICON_Y_AXIS

ICON_Z_AXIS

ICON_PROTRACTOR

frameBorder

jsp

treeSelectionChange

updateTree

voiHandler

selectedVOI

index

logicalOperation

processList

Constructor Detail

JDialogVOILogicalOperations

Method Detail

cleanUpAndDispose

buildDialog

buildOKCancelPanel

vectorSelected

addedVOI

removedVOI

buildSourceListingPanel

updateTree

buildVOITree