java.lang.Object
- gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
- - gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast

public class VolumeRayCast
extends VolumeObject

Author:: alexa

Field Summary

Fields
Modifier and Type	Field	Description
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`backBottomLeft`
`private int`	`backBottomLeftIndex`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`backBottomRight`
`private int`	`backBottomRightIndex`
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`backFace`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`backTopLeft`
`private int`	`backTopLeftIndex`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`backTopRight`
`private int`	`backTopRightIndex`
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`bottomFace`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`centerBox`
`private boolean[]`	`clippedPoints`
`private WildMagic.LibFoundation.Mathematics.Vector3f[]`	`cornerPoints`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`frontBottomLeft`
`private int`	`frontBottomLeftIndex`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`frontBottomRight`
`private int`	`frontBottomRightIndex`
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`frontFace`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`frontTopLeft`
`private int`	`frontTopLeftIndex`
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`frontTopRight`
`private int`	`frontTopRightIndex`
`private VolumeImage[]`	`hyperStack`
`private WildMagic.LibGraphics.Rendering.Texture`	`hyperstackColormap`
`private WildMagic.LibFoundation.Mathematics.Matrix4f`	`kWorldInv`
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`leftFace`
`private float`	`m_fMax`	Normalized volume extents:
`private WildMagic.LibFoundation.Mathematics.Plane3f`	`m_kCullPlane`
`private WildMagic.LibGraphics.Rendering.MaterialState`	`m_kMaterial`	Material properties for Volume Surface (and Composite Surface) mode
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`m_kMesh`	Volume proxy-geometry (cube)
`private WildMagic.LibGraphics.Rendering.Renderer`	`m_kRenderer`
`private VolumeShaderEffectMultiPass`	`m_kVolumeShaderEffect`	VolumeShaderEffect applied to proxy-geometry:
`private WildMagic.LibGraphics.Effects.ShaderEffect`	`m_spkVertexColor3Shader`	Vertex-color shader effect used for the polylines and the first-pass rendering of the proxy-geometry:
`private int`	`numPoints`
`private float`	`planeConstant`
`private int[]`	`reorderedList`
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`rightFace`
`private WildMagic.LibFoundation.Mathematics.Vector3f[]`	`rotatedPoints`
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`topFace`

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
m_bDisplay, m_bPickable, m_bTransparent, m_fVolumeDiv, m_fVolumeMult, m_fX, m_fY, m_fZ, m_kAlpha, m_kAlphaTransparency, m_kCull, m_kDeleteList, m_kLightShader, m_kLocalScale, m_kPolygonOffset, m_kResolutions, m_kScene, m_kTranslate, m_kVolumeImageA, m_kVolumeImageB, m_kVolumeScale, m_kVolumeTrans, m_kWireframe, m_kZBuffer, m_kZBufferTransparency

Constructor Summary

Constructors
Constructor Description

VolumeRayCast(VolumeImage kImageA, VolumeImage kImageB)
Creates a new VolumeRayCast object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`Box(int iXBound, int iYBound, int iZBound)`	Called by CreateBox.
`private void`	`checkMeshPoints()`	Check that the currently loaded proxy geometry is the default cube, if it is not reload it onto the GPU.
`void`	`CheckViewIntersection(WildMagic.LibGraphics.Rendering.Renderer kRenderer, WildMagic.LibGraphics.SceneGraph.Culler kCuller)`	The volume data is rendered with a fragment (pixel) shader on the GPU.
`void`	`CMPMode()`	Display the volume in Composite mode.
`private void`	`computeIntersections()`	Compute the cube-plane intersection.
`private void`	`CreateBox()`	Called by CreateScene.
`void`	`CreateScene()`	Called by the init() function.
`private void`	`cullBackBottomLeft()`	Creates a re-mapping of the cube corners so the back bottom left corner is at position 0 in the reorderedList.
`private void`	`cullBackBottomRight()`	Creates a re-mapping of the cube corners so the back bottom right corner is at position 0 in the reorderedList.
`private void`	`cullBackTopLeft()`	Creates a re-mapping of the cube corners so the back top left corner is at position 0 in the reorderedList.
`private void`	`cullBackTopRight()`	Creates a re-mapping of the cube corners so the back top right corner is at position 0 in the reorderedList.
`private void`	`cullFrontBottomLeft()`	Creates a re-mapping of the cube corners so the front bottom left corner is at position 0 in the reorderedList.
`private void`	`cullFrontBottomRight()`	Creates a re-mapping of the cube corners so the front bottom right corner is at position 0 in the reorderedList.
`private void`	`cullFrontTopLeft()`	Creates a re-mapping of the cube corners so the front top left corner is at position 0 in the reorderedList.
`private void`	`cullFrontTopRight()`	Creates a re-mapping of the cube corners so the front top right corner is at position 0 in the reorderedList.
`private void`	`cullPoints(float[] clippedDistance)`	1.
`void`	`dispose(WildMagic.LibGraphics.Rendering.Renderer kRenderer)`	delete local memory.
`void`	`DRRMode()`	Display the volume in DDR mode.
`private void`	`fillBox(WildMagic.LibGraphics.SceneGraph.IndexBuffer pkIB)`	Generates the triangle -index array connectivity for the default cube, stores the index array in the input IndexBuffer.
`private void`	`fillBox(WildMagic.LibGraphics.SceneGraph.VertexBuffer pkVB)`	Fills in the values for the default cube.
`float`	`getABBlend()`
`VolumeClipEffect`	`GetClipEffect()`	Return current clipping state.
`boolean`	`GetGradientMagnitude()`
`boolean`	`getImageOn(int which)`
`WildMagic.LibGraphics.Rendering.MaterialState`	`GetMaterialState()`	Called from the JPanelDisplay dialog.
`WildMagic.LibGraphics.SceneGraph.TriMesh`	`getMesh()`
`VolumeShaderEffectMultiPass`	`GetShaderEffect()`	Returns the VolumeShaderEffect.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`GetTranslate()`	Returns the translation vector.
`WildMagic.LibFoundation.Mathematics.Matrix4f`	`GetWorld()`
`void`	`MIPMode()`	Display the volume in MIP mode.
`void`	`MULTIHISTOMode(boolean bOn)`	Display the volume in Multi-histo mode.
`private void`	`PreRender(WildMagic.LibGraphics.Rendering.Renderer kRenderer, WildMagic.LibGraphics.SceneGraph.Culler kCuller)`	PreRender renders the proxy geometry into the PBuffer texture.
`void`	`printProgram()`
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`reCreateBox(int iXBound, int iYBound, int iZBound)`
`void`	`reCreateScene(VolumeImage image)`
`void`	`reCreateScene(VolumeImage imageA, VolumeImage imageB)`
`void`	`recreateShaderEffect(WildMagic.LibGraphics.Rendering.Renderer kRenderer, WildMagic.LibGraphics.Rendering.Texture targetTexture)`
`void`	`releaseShaderEffect(WildMagic.LibGraphics.Rendering.Renderer kRenderer)`
`void`	`ReloadVolumeShader(WildMagic.LibGraphics.Rendering.Renderer kRenderer)`	Reloads the VolumeShaderEffect current shader program.
`void`	`Render(WildMagic.LibGraphics.Rendering.Renderer kRenderer, WildMagic.LibGraphics.SceneGraph.Culler kCuller, boolean bPreRender, boolean bSolid)`	Render the object.
`private void`	`retriangulate(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> intersectionPoints)`	Generates the new VertexBuffer and IndexBuffer for the retriangulated faces of the cube based on how the cube intersects with the clipping plane.
`void`	`SelfShadow(boolean bShadow)`	Enables/Disables self-shadowing in the Surface mode.
`void`	`setABBlend(float fValue)`	Sets blending between imageA and imageB.
`void`	`SetBackgroundColor(WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)`	Sets the background color.
`void`	`SetClip(int iWhich, float data, boolean bEnable)`	Sets axis-aligned clipping for the VolumeShaderEffect.
`void`	`SetClipArb(float[] afEquation, boolean bEnable)`	Sets arbitrary clipping for the VolumeShaderEffect.
`void`	`SetClipArbInv(float[] afEquation, boolean bEnable)`	Sets arbitrary clipping for the VolumeShaderEffect.
`void`	`SetClipEye(float[] afEquation, boolean bEnable)`	Sets eye clipping for the VolumeShaderEffect.
`void`	`SetClipEyeInv(float[] afEquation, boolean bEnable)`	Sets inverse-eye clipping for the VolumeShaderEffect.
`void`	`SetClipOBB(WildMagic.LibFoundation.Mathematics.Vector3f center, WildMagic.LibFoundation.Mathematics.Vector3f scale, WildMagic.LibFoundation.Mathematics.Vector3f[] axes, float[] extents, boolean bEnable)`
`void`	`SetClipSphere(WildMagic.LibFoundation.Mathematics.Vector3f center, WildMagic.LibFoundation.Mathematics.Vector3f scale, float radius, boolean bEnable)`
`void`	`SetCustomBlend(int iBlendEquation, int iLogicOp, int iSrcBlend, int iDstBlend, WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)`
`void`	`SetGradientMagnitude(boolean bShow)`	Enables/Disables Gradient Magnitude filter.
`void`	`setHyperStack(VolumeImage[] images, WildMagic.LibGraphics.Rendering.Texture colormap)`
`void`	`setImageOn(int which, boolean on)`
`void`	`SetLight(java.lang.String kLightType, float[] afType)`	Sets lighting in the VolumeShaderEffect.
`void`	`SetMaterialState(WildMagic.LibGraphics.Rendering.MaterialState kMaterial)`	Called from the AdvancedMaterialProperties dialog.
`void`	`setPlaneConstant(float _constant)`	Set the front the clipping plane constant
`void`	`setRGBTA(ModelRGB RGBT)`
`void`	`setRGBTB(ModelRGB RGBT)`
`void`	`setVolumeBlend(float fBlend)`	Sets the blend factor for displaying the ray-cast volume with other objects in the scene.
`int`	`setVolumeSamples(float fSample)`
`void`	`SURFASTMode()`	Display the volume in Surface mode.
`void`	`SURMode()`	Display the volume in Composite Surface mode.
`void`	`updateLevWidgetState(java.util.Vector<ClassificationWidget> kLWS)`

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
Blend, Dropper, Erase, GetBackface, getDepth, GetDisplay, GetMesh, GetName, GetPickable, GetPolygonMode, GetScene, getTexCoord, localToScannerCoords, localToVolumeCoords, Paint, PostRender, scale, SetBackface, SetColor, SetDisplay, SetFrontface, setImageB, SetPickable, SetPolygonMode, SetTranslate, Translate, volumeToLocalCoords

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - m_kVolumeShaderEffect
```
private VolumeShaderEffectMultiPass m_kVolumeShaderEffect
```
    VolumeShaderEffect applied to proxy-geometry:
  - m_spkVertexColor3Shader
```
private WildMagic.LibGraphics.Effects.ShaderEffect m_spkVertexColor3Shader
```
    Vertex-color shader effect used for the polylines and the first-pass rendering of the proxy-geometry:
  - m_fMax
```
private float m_fMax
```
    Normalized volume extents:
  - m_kMaterial
```
private WildMagic.LibGraphics.Rendering.MaterialState m_kMaterial
```
    Material properties for Volume Surface (and Composite Surface) mode
  - m_kMesh
```
private WildMagic.LibGraphics.SceneGraph.TriMesh m_kMesh
```
    Volume proxy-geometry (cube)
  - numPoints
```
private final int numPoints
```
    See Also:
    
    Constant Field Values
  - centerBox
```
private WildMagic.LibFoundation.Mathematics.Vector3f centerBox
```
  - clippedPoints
```
private boolean[] clippedPoints
```
  - cornerPoints
```
private WildMagic.LibFoundation.Mathematics.Vector3f[] cornerPoints
```
  - rotatedPoints
```
private WildMagic.LibFoundation.Mathematics.Vector3f[] rotatedPoints
```
  - reorderedList
```
private int[] reorderedList
```
  - frontBottomLeftIndex
```
private final int frontBottomLeftIndex
```
    See Also:
    
    Constant Field Values
  - frontBottomRightIndex
```
private final int frontBottomRightIndex
```
    See Also:
    
    Constant Field Values
  - frontTopRightIndex
```
private final int frontTopRightIndex
```
    See Also:
    
    Constant Field Values
  - frontTopLeftIndex
```
private final int frontTopLeftIndex
```
    See Also:
    
    Constant Field Values
  - backBottomLeftIndex
```
private final int backBottomLeftIndex
```
    See Also:
    
    Constant Field Values
  - backBottomRightIndex
```
private final int backBottomRightIndex
```
    See Also:
    
    Constant Field Values
  - backTopRightIndex
```
private final int backTopRightIndex
```
    See Also:
    
    Constant Field Values
  - backTopLeftIndex
```
private final int backTopLeftIndex
```
    See Also:
    
    Constant Field Values
  - frontBottomLeft
```
private WildMagic.LibFoundation.Mathematics.Vector3f frontBottomLeft
```
  - frontBottomRight
```
private WildMagic.LibFoundation.Mathematics.Vector3f frontBottomRight
```
  - frontTopRight
```
private WildMagic.LibFoundation.Mathematics.Vector3f frontTopRight
```
  - frontTopLeft
```
private WildMagic.LibFoundation.Mathematics.Vector3f frontTopLeft
```
  - backBottomLeft
```
private WildMagic.LibFoundation.Mathematics.Vector3f backBottomLeft
```
  - backBottomRight
```
private WildMagic.LibFoundation.Mathematics.Vector3f backBottomRight
```
  - backTopRight
```
private WildMagic.LibFoundation.Mathematics.Vector3f backTopRight
```
  - backTopLeft
```
private WildMagic.LibFoundation.Mathematics.Vector3f backTopLeft
```
  - m_kCullPlane
```
private WildMagic.LibFoundation.Mathematics.Plane3f m_kCullPlane
```
  - planeConstant
```
private float planeConstant
```
  - m_kRenderer
```
private WildMagic.LibGraphics.Rendering.Renderer m_kRenderer
```
  - kWorldInv
```
private WildMagic.LibFoundation.Mathematics.Matrix4f kWorldInv
```
  - topFace
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> topFace
```
  - bottomFace
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> bottomFace
```
  - leftFace
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> leftFace
```
  - rightFace
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> rightFace
```
  - frontFace
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> frontFace
```
  - backFace
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> backFace
```
  - hyperStack
```
private VolumeImage[] hyperStack
```
  - hyperstackColormap
```
private WildMagic.LibGraphics.Rendering.Texture hyperstackColormap
```
- Constructor Detail
  - VolumeRayCast
```
public VolumeRayCast(VolumeImage kImageA,
                     VolumeImage kImageB)
```
    Creates a new VolumeRayCast object.
    
    Parameters:
    
    kImageA - the VolumeImage containing the data and textures for rendering.
    
    kVolumeImageB - second VolumeImage.
- Method Detail
  - CheckViewIntersection
```
public void CheckViewIntersection(WildMagic.LibGraphics.Rendering.Renderer kRenderer,
                                  WildMagic.LibGraphics.SceneGraph.Culler kCuller)
```
    The volume data is rendered with a fragment (pixel) shader on the GPU. The shader is activated by rendering a volume proxy geometry, which is a cube that matches the volume bounding box. One problem with this technique for rendering volume data is that when the bounding-volume proxy geometry is clipped by the view-frustum near-plane the geometry is no longer rendered on the GPU and therefore the fragment shader is no longer activated. This causes the volume rendering to disappear as the user tries to zoom into it. This function automatically detects clipping of the volume proxy-geometry by the view-frustum near-plane as the camera moves into the volume. When clipping is detected, the algorithm generates a new triangle mesh by intersecting the near-plane with the original bounding-cube. The new triangle mesh serves as the volume proxy geometry. The result is the appearance of moving inside the volume as the user zooms the camera. The default cube is always the starting point for the algorithm, even if a non-cube shape is currently displayed as the volume proxy geometry.
    
    Parameters:
    
    kRenderer -
    
    kCuller -
  - setPlaneConstant
```
public void setPlaneConstant(float _constant)
```
    Set the front the clipping plane constant
    
    Parameters:
    
    _constant - contant between 0 to 0.01;
  - CMPMode
```
public void CMPMode()
```
    Display the volume in Composite mode.
  - CreateScene
```
public void CreateScene()
```
    Called by the init() function. Creates and initialized the scene-graph.
    
    Parameters:
    
    eFormat - FrameBuffer.FormatType
    
    eDepth - FrameBuffer.DepthType
    
    eStencil - FrameBuffer.StencilType
    
    eBuffering - FrameBuffer.BufferingType
    
    eMultisampling - FrameBuffer.MultisamplingType
    
    iWidth - canvas width
    
    iHeight - canvas height
    
    arg0 - the GLCanvas
    
    kRenderer - the OpenGLRenderer.
  - reCreateScene
```
public void reCreateScene(VolumeImage image)
```
  - reCreateScene
```
public void reCreateScene(VolumeImage imageA,
                          VolumeImage imageB)
```
  - dispose
```
public void dispose(WildMagic.LibGraphics.Rendering.Renderer kRenderer)
```
    delete local memory.
    
    Overrides:
    
    dispose in class VolumeObject
  - DRRMode
```
public void DRRMode()
```
    Display the volume in DDR mode.
  - getABBlend
```
public float getABBlend()
```
  - GetClipEffect
```
public VolumeClipEffect GetClipEffect()
```
    Return current clipping state.
    
    Returns:
    
    current clipping state.
  - GetGradientMagnitude
```
public boolean GetGradientMagnitude()
```
  - GetMaterialState
```
public WildMagic.LibGraphics.Rendering.MaterialState GetMaterialState()
```
    Called from the JPanelDisplay dialog. Gets the material properties for the VolumeShaderSUR (Surface and Composite Surface volume shaders.)
    
    Returns:
    
    material properties for the surface mode.
  - getMesh
```
public WildMagic.LibGraphics.SceneGraph.TriMesh getMesh()
```
  - GetShaderEffect
```
public VolumeShaderEffectMultiPass GetShaderEffect()
```
    Returns the VolumeShaderEffect.
    
    Returns:
    
    the VolumeShaderEffect.
  - GetTranslate
```
public WildMagic.LibFoundation.Mathematics.Vector3f GetTranslate()
```
    Returns the translation vector.
    
    Overrides:
    
    GetTranslate in class VolumeObject
    
    Returns:
    
    the translation vector.
  - GetWorld
```
public WildMagic.LibFoundation.Mathematics.Matrix4f GetWorld()
```
  - MIPMode
```
public void MIPMode()
```
    Display the volume in MIP mode.
  - MULTIHISTOMode
```
public void MULTIHISTOMode(boolean bOn)
```
    Display the volume in Multi-histo mode.
  - printProgram
```
public void printProgram()
```
  - setHyperStack
```
public void setHyperStack(VolumeImage[] images,
                          WildMagic.LibGraphics.Rendering.Texture colormap)
```
  - setImageOn
```
public void setImageOn(int which,
                       boolean on)
```
  - getImageOn
```
public boolean getImageOn(int which)
```
  - recreateShaderEffect
```
public void recreateShaderEffect(WildMagic.LibGraphics.Rendering.Renderer kRenderer,
                                 WildMagic.LibGraphics.Rendering.Texture targetTexture)
```
  - releaseShaderEffect
```
public void releaseShaderEffect(WildMagic.LibGraphics.Rendering.Renderer kRenderer)
```
  - ReloadVolumeShader
```
public void ReloadVolumeShader(WildMagic.LibGraphics.Rendering.Renderer kRenderer)
```
    Reloads the VolumeShaderEffect current shader program.
    
    Parameters:
    
    kRenderer - the OpenGLRenderer object.
  - Render
```
public void Render(WildMagic.LibGraphics.Rendering.Renderer kRenderer,
                   WildMagic.LibGraphics.SceneGraph.Culler kCuller,
                   boolean bPreRender,
                   boolean bSolid)
```
    Render the object.
    
    Specified by:
    
    Render in class VolumeObject
    
    Parameters:
    
    kRenderer - the OpenGLRenderer object.
    
    kCuller - the Culler object.
  - SelfShadow
```
public void SelfShadow(boolean bShadow)
```
    Enables/Disables self-shadowing in the Surface mode.
    
    Parameters:
    
    bShadow - shadow on/off.
  - setABBlend
```
public void setABBlend(float fValue)
```
    Sets blending between imageA and imageB.
    
    Parameters:
    
    fValue - the blend value (0-1)
  - SetBackgroundColor
```
public void SetBackgroundColor(WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)
```
    Sets the background color.
    
    Parameters:
    
    kColor - new background color.
  - SetClip
```
public void SetClip(int iWhich,
                    float data,
                    boolean bEnable)
```
    Sets axis-aligned clipping for the VolumeShaderEffect.
    
    Parameters:
    
    afClip - the clipping parameters for axis-aligned clipping.
  - SetClipArb
```
public void SetClipArb(float[] afEquation,
                       boolean bEnable)
```
    Sets arbitrary clipping for the VolumeShaderEffect.
    
    Parameters:
    
    afEquation - the arbitrary-clip plane equation.
  - SetClipArbInv
```
public void SetClipArbInv(float[] afEquation,
                          boolean bEnable)
```
    Sets arbitrary clipping for the VolumeShaderEffect.
    
    Parameters:
    
    afEquation - the arbitrary-clip plane equation.
  - SetClipEye
```
public void SetClipEye(float[] afEquation,
                       boolean bEnable)
```
    Sets eye clipping for the VolumeShaderEffect.
    
    Parameters:
    
    afEquation - the eye clipping equation.
  - SetClipEyeInv
```
public void SetClipEyeInv(float[] afEquation,
                          boolean bEnable)
```
    Sets inverse-eye clipping for the VolumeShaderEffect.
    
    Parameters:
    
    afEquation - the inverse-eye clipping equation.
  - SetClipSphere
```
public void SetClipSphere(WildMagic.LibFoundation.Mathematics.Vector3f center,
                          WildMagic.LibFoundation.Mathematics.Vector3f scale,
                          float radius,
                          boolean bEnable)
```
  - SetClipOBB
```
public void SetClipOBB(WildMagic.LibFoundation.Mathematics.Vector3f center,
                       WildMagic.LibFoundation.Mathematics.Vector3f scale,
                       WildMagic.LibFoundation.Mathematics.Vector3f[] axes,
                       float[] extents,
                       boolean bEnable)
```
  - SetCustomBlend
```
public void SetCustomBlend(int iBlendEquation,
                           int iLogicOp,
                           int iSrcBlend,
                           int iDstBlend,
                           WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)
```
  - SetGradientMagnitude
```
public void SetGradientMagnitude(boolean bShow)
```
    Enables/Disables Gradient Magnitude filter.
    
    Parameters:
    
    bShow - gradient magnitude filter on/off
  - SetLight
```
public void SetLight(java.lang.String kLightType,
                     float[] afType)
```
    Sets lighting in the VolumeShaderEffect.
    
    Overrides:
    
    SetLight in class VolumeObject
    
    Parameters:
    
    kLightType - name of the light to set.
    
    afType - the type of light to set.
  - SetMaterialState
```
public void SetMaterialState(WildMagic.LibGraphics.Rendering.MaterialState kMaterial)
```
    Called from the AdvancedMaterialProperties dialog. Sets the material properties for the VolumeShaderSUR (Surface and Composite Surface volume shaders.)
    
    Parameters:
    
    kMaterial - new material properties for the surface mode.
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
  - setVolumeBlend
```
public void setVolumeBlend(float fBlend)
```
    Sets the blend factor for displaying the ray-cast volume with other objects in the scene.
    
    Parameters:
    
    fBlend - the blend factor for the ray-cast volume.
  - setVolumeSamples
```
public int setVolumeSamples(float fSample)
```
  - SURFASTMode
```
public void SURFASTMode()
```
    Display the volume in Surface mode.
  - SURMode
```
public void SURMode()
```
    Display the volume in Composite Surface mode.
  - updateLevWidgetState
```
public void updateLevWidgetState(java.util.Vector<ClassificationWidget> kLWS)
```
  - Box
```
private WildMagic.LibGraphics.SceneGraph.TriMesh Box(int iXBound,
                                                     int iYBound,
                                                     int iZBound)
```
    Called by CreateBox. Creates the bounding-box proxy geometry (VertexBuffer, IndexBuffer).
    
    Parameters:
    
    iXBound - image x-extent.
    
    iYBound - image y-extent.
    
    iZBound - image z-extent.
    
    Returns:
    
    TriMesh, new geometry.
  - reCreateBox
```
private WildMagic.LibGraphics.SceneGraph.TriMesh reCreateBox(int iXBound,
                                                             int iYBound,
                                                             int iZBound)
```
  - checkMeshPoints
```
private void checkMeshPoints()
```
    Check that the currently loaded proxy geometry is the default cube, if it is not reload it onto the GPU.
  - computeIntersections
```
private void computeIntersections()
```
    Compute the cube-plane intersection. Remove clipped points from each face of the cube that intersects the clipping-plane. Add the intersection points to clipped faces. This is done while maintaining the counter-clockwise ordering of the points on the cube faces.
  - CreateBox
```
private void CreateBox()
```
    Called by CreateScene. Creates the bounding-box proxy geometry scene node.
  - cullBackBottomLeft
```
private void cullBackBottomLeft()
```
    Creates a re-mapping of the cube corners so the back bottom left corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullBackBottomRight
```
private void cullBackBottomRight()
```
    Creates a re-mapping of the cube corners so the back bottom right corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullBackTopLeft
```
private void cullBackTopLeft()
```
    Creates a re-mapping of the cube corners so the back top left corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullBackTopRight
```
private void cullBackTopRight()
```
    Creates a re-mapping of the cube corners so the back top right corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullFrontBottomLeft
```
private void cullFrontBottomLeft()
```
    Creates a re-mapping of the cube corners so the front bottom left corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullFrontBottomRight
```
private void cullFrontBottomRight()
```
    Creates a re-mapping of the cube corners so the front bottom right corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullFrontTopLeft
```
private void cullFrontTopLeft()
```
    Creates a re-mapping of the cube corners so the front top left corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullFrontTopRight
```
private void cullFrontTopRight()
```
    Creates a re-mapping of the cube corners so the front top right corner is at position 0 in the reorderedList. The other points are added to the list based on the cube connectivity.
  - cullPoints
```
private void cullPoints(float[] clippedDistance)
```
    1. Determine which of the cube corners is the furthest along the negative z-direction (0,0,-1). This corner is clipped by the view-frustum and will serve and the starting corner in creating the new mesh surface.
    
    Parameters:
    
    clippedDistance -
  - fillBox
```
private void fillBox(WildMagic.LibGraphics.SceneGraph.IndexBuffer pkIB)
```
    Generates the triangle -index array connectivity for the default cube, stores the index array in the input IndexBuffer.
    
    Parameters:
    
    pkIB -
  - fillBox
```
private void fillBox(WildMagic.LibGraphics.SceneGraph.VertexBuffer pkVB)
```
    Fills in the values for the default cube. Writes the values into the input VertexBuffer. Fills in the position, color, and texture coordinates.
    
    Parameters:
    
    pkVB -
  - PreRender
```
private void PreRender(WildMagic.LibGraphics.Rendering.Renderer kRenderer,
                       WildMagic.LibGraphics.SceneGraph.Culler kCuller)
```
    PreRender renders the proxy geometry into the PBuffer texture.
    
    Parameters:
    
    kRenderer - the OpenGLRenderer object.
    
    kCuller - the Culler object.
  - retriangulate
```
private void retriangulate(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> intersectionPoints)
```
    Generates the new VertexBuffer and IndexBuffer for the retriangulated faces of the cube based on how the cube intersects with the clipping plane. Each of the faces: top, bottom, front, back, left, right have points listed in counter-clockwise order. Where the clipping plane intersects the face the clipped points have been removed and the new intersection points have been added -- always maintaining the ccw ordering of the points. This way we can automatically generate the triangle mesh by adding up the points and calculating the number of triangles per face. The input list represents the new face -- the one generated by the clip plane intersecting the cube.
    
    Parameters:
    
    intersectionPoints -

Class VolumeRayCast

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject

Methods inherited from class java.lang.Object

Field Detail

m_kVolumeShaderEffect

m_spkVertexColor3Shader

m_fMax

m_kMaterial

m_kMesh

numPoints

centerBox

clippedPoints

cornerPoints

rotatedPoints

reorderedList

frontBottomLeftIndex

frontBottomRightIndex

frontTopRightIndex

frontTopLeftIndex

backBottomLeftIndex

backBottomRightIndex

backTopRightIndex

backTopLeftIndex

frontBottomLeft

frontBottomRight

frontTopRight

frontTopLeft

backBottomLeft

backBottomRight

backTopRight

backTopLeft

m_kCullPlane

planeConstant

m_kRenderer

kWorldInv

topFace

bottomFace

leftFace

rightFace

frontFace

backFace

hyperStack

hyperstackColormap

Constructor Detail

VolumeRayCast

Method Detail

CheckViewIntersection

setPlaneConstant

CMPMode

CreateScene

reCreateScene

reCreateScene

dispose

DRRMode

getABBlend

GetClipEffect

GetGradientMagnitude

GetMaterialState

getMesh

GetShaderEffect

GetTranslate

GetWorld

MIPMode

MULTIHISTOMode

printProgram

setHyperStack

setImageOn

getImageOn

recreateShaderEffect

releaseShaderEffect

ReloadVolumeShader

Render

SelfShadow

setABBlend

SetBackgroundColor

SetClip