java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.structures.ModelStorageBase
  - - gov.nih.mipav.model.structures.ModelHistogram

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class ModelHistogram
extends ModelStorageBase
```
Histogram model extends ModelStorageBase and stores and processes information about histograms.

Version:

0.1 Oct 1, 1997

Author:

Matthew J. McAuliffe, Ph.D.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.structures.ModelStorageBase
  ModelStorageBase.DataType

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`endRange`	DOCUMENT ME!
`private java.util.Vector<java.awt.Frame>`	`histogramFrameVector`	DOCUMENT ME!
`private int`	`maxEntropyThreshold`	DOCUMENT ME!
`private double`	`mean`	DOCUMENT ME!
`private int`	`mode`	DOCUMENT ME!
`private int`	`otsuThreshold`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private int`	`stRange`	DOCUMENT ME!
`private int`	`totalPixels`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.structures.ModelStorageBase
ARGB, ARGB_FLOAT, ARGB_FLOAT_STRING, ARGB_STRING, ARGB_UINTEGER, ARGB_UINTEGER_STRING, ARGB_USHORT, ARGB_USHORT_STRING, BOOLEAN, BOOLEAN_STRING, bufferTypeStr, BYTE, BYTE_STRING, COMPLEX, COMPLEX_STRING, DCOMPLEX, DCOMPLEX_STRING, DOUBLE, DOUBLE_STRING, fileInfo, FLOAT, FLOAT_STRING, INTEGER, INTEGER_STRING, lastMax, lastMin, LINEAR, logMagDisp, LONG, LONG_STRING, NEAREST, RW_LOCKED, SHORT, SHORT_STRING, TAYLOR, UBYTE, UBYTE_STRING, UINTEGER, UINTEGER_STRING, UNLOCKED, USHORT, USHORT_STRING, W_LOCKED

Constructor Summary

Constructors
Constructor Description

ModelHistogram(int type, int[] dimExtents)
ModelHistogram.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`getEndRange()`	Gets the starting range of pixels.
`int`	`getMaxEntropyThreshold()`	Gets the maximum entropy threshold.
`double`	`getMean()`	Gets the mean pixel intensity.
`int`	`getMode()`	Gets the mode of the pixel intensities.
`int`	`getOtsuThreshold()`	Gets the otsu threshold as calculated in AlgorithmThreshold.
`int`	`getStartRange()`	Gets the starting range of pixels.
`int`	`getTotalPixels()`	Gets the total pixel count.
`void`	`registerFrame(java.awt.Frame frame)`	Registers the image Frame.
`void`	`setEndRange(int end)`	Sets the ending range of histogram.
`void`	`setMaxEntropyThreshold(int thres)`	Sets maximum entropy threshold.
`void`	`setMean(double mean)`	Sets mean intensity of histogram.
`void`	`setMode(int mode)`	Sets the mode intensity of histogram.
`void`	`setOtsuThreshold(int otsu)`	Sets the Otsu threshold.
`void`	`setStartRange(int start)`	Sets the starting range of histogram.
`void`	`setTotalPixels(int pixels)`	Sets total number of pixels of histogram.
`void`	`unregisterFrame(java.awt.Frame frame)`	Unregisters the image Frame.

Methods inherited from class gov.nih.mipav.model.structures.ModelStorageBase
addSurfaceMask, allocateData, calcAvgIntenStdDev, calcMinMax, calcMinMax, calcMinMaxMag, calcMinMaxNonZero, clone, computeDataSize, construct, convertToFloat, disposeLocal, export, export, exportComplexData, exportComplexSliceXY, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDComplexData, exportDiagonal, exportDiagonal, exportDiagonal, exportDMagData, exportMagData, exportMagData, exportRGBData, exportRGBData, exportRGBData, exportRGBData, exportRGBData, exportRGBDataNoLock, exportRGBDataNoLock, exportSliceXY, exportSliceXY, exportSliceXY, exportSliceXY, exportSliceXY, exportSliceXY, finalize, findMax, get, get, get, get, get, getAvgInten, getAvgIntenB, getAvgIntenG, getAvgIntenR, getAxisOrientation, getBiLinear, getBoolean, getBoolean, getBoolean, getBoolean, getBoolean, getBufferTypeStr, getByte, getByte, getByte, getByte, getByte, getByteBiLinear, getByteTriLinear, getC, getConvolve, getDataSize, getDataType, getDouble, getDouble, getDouble, getDouble, getDouble, getDoubleBiLinear, getDoubleTriLinear, getExtents, getExtents, getExtents, getExtentsSize, getFileInfo, getFileInfo, getFilterType, getFloat, getFloat, getFloat, getFloat, getFloat, getFloatBiLinear, getFloatC, getFloatC, getFloatC, getFloatTriLinear, getFloatTriLinearBounds, getFloatTriLinearBounds, getFloatTriLinearBoundsTime, getFreq1, getFreq2, getFreqU, getFreqV, getHaveWindowed, getHeight, getImage25D, getImageOrientation, getInt, getInt, getInt, getInt, getInt, getIntBiLinear, getIntTriLinear, getLockStatus, getLogMagDisplay, getLong, getLong, getLong, getLong, getLong, getLongBiLinear, getLongTriLinear, getMax, getMaxA, getMaxB, getMaxG, getMaxR, getMin, getMinA, getMinB, getMinG, getMinR, getNDims, getNoLogMax, getNoLogMin, getNoLogMinNonZero, getNonZeroMax, getNonZeroMaxB, getNonZeroMaxG, getNonZeroMaxR, getNonZeroMin, getNonZeroMinB, getNonZeroMinG, getNonZeroMinR, getNumPixels, getOrigin, getOrigin, getOriginalCropCheckbox, getOriginalDoCrop, getOriginalEnd, getOriginalEpsilon, getOriginalExtents, getOriginalFilterConstruction, getOriginalFilterOrder, getOriginalKernelDimension, getOriginalRs, getOriginalStart, getRadiologicalView, getResolutions, getResolutions, getResolutions, getShort, getShort, getShort, getShort, getShort, getShortBiLinear, getShortTriLinear, getSigmaU, getSigmaV, getSize, getSliceSize, getSmallestMagnitudeNegative, getSmallestMagnitudeNegativeB, getSmallestMagnitudeNegativeG, getSmallestMagnitudeNegativeR, getSmallestMagnitudePositive, getSmallestMagnitudePositiveB, getSmallestMagnitudePositiveG, getSmallestMagnitudePositiveR, getStdDeviation, getStdDeviationB, getStdDeviationG, getStdDeviationR, getSumPixelInten, getSumPixelIntenB, getSumPixelIntenG, getSumPixelIntenR, getSurfaceMask, getSurfaceMaskColor, getTheta, getTriLinear, getType, getTypeMax, getTypeMin, getTypeString, getUByte, getUByte, getUByte, getUByte, getUByte, getUByteBiLinear, getUByteTriLinear, getUInt, getUInt, getUInt, getUInt, getUInt, getUIntBiLinear, getUIntTriLinear, getUnequalDim, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasure, getUShort, getUShort, getUShort, getUShort, getUShort, getUShortBiLinear, getUShortTriLinear, getVolumeIterationFactors, getVolumeSize, getWidth, importComplexData, importData, importData, importData, importData, importData, importData, importData, importData, importData, importData, importDComplexData, importRGBData, importRGBData, importRGBData, importUData, importUData, importUData, reallocate, reallocate, reallocate, recomputeDataSize, releaseLock, removeSurfaceMask, removeSurfaceMasks, restoreSurfaceMasks, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, setAll, setAll, setAll, setAll, setAll, setAllUByte, setAllUShort, setC, setC, setC, setC, setC, setComplex, setConvolve, setExtents, setFileInfo, setFileInfo, setFilterType, setFreq1, setFreq2, setFreqU, setFreqV, setHaveWindowed, setImage25D, setLock, setLock, setLogMagDisplay, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setOriginalCropCheckbox, setOriginalDoCrop, setOriginalEnd, setOriginalEpsilon, setOriginalExtents, setOriginalFilterConstruction, setOriginalFilterOrder, setOriginalKernelDimension, setOriginalRs, setOriginalStart, setRadiologicalView, setResolutions, setResolutions, setShort, setShort, setSigmaU, setSigmaV, setTheta, setType, setType, setUByte, setUByte, setUByte, setUByte, setUByte, setUInt, setUInt, setUInt, setUInt, setUInt, setUnequalDim, setUShort, setUShort, setUShort, setUShort, setUShort

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - histogramFrameVector
```
private java.util.Vector<java.awt.Frame> histogramFrameVector
```
    DOCUMENT ME!
  - maxEntropyThreshold
```
private int maxEntropyThreshold
```
    DOCUMENT ME!
  - mean
```
private double mean
```
    DOCUMENT ME!
  - mode
```
private int mode
```
    DOCUMENT ME!
  - otsuThreshold
```
private int otsuThreshold
```
    DOCUMENT ME!
  - stRange
```
private int stRange
```
    DOCUMENT ME!
  - endRange
```
private int endRange
```
    DOCUMENT ME!
  - totalPixels
```
private int totalPixels
```
    DOCUMENT ME!
- Constructor Detail
  - ModelHistogram
```
public ModelHistogram(int type,
                      int[] dimExtents)
```
    ModelHistogram.
    
    Parameters:
    
    type - indicates type of data in histogram
    
    dimExtents - array indicating extents (1 - dimension)
- Method Detail
  - getEndRange
```
public int getEndRange()
```
    Gets the starting range of pixels.
    
    Returns:
    
    ending range
  - getMaxEntropyThreshold
```
public int getMaxEntropyThreshold()
```
    Gets the maximum entropy threshold.
    
    Returns:
    
    int threshold
  - getMean
```
public double getMean()
```
    Gets the mean pixel intensity.
    
    Returns:
    
    mean pixel intensity
  - getMode
```
public int getMode()
```
    Gets the mode of the pixel intensities.
    
    Returns:
    
    total number of pixels in histogram
  - getOtsuThreshold
```
public int getOtsuThreshold()
```
    Gets the otsu threshold as calculated in AlgorithmThreshold.
    
    Returns:
    
    int otsu threshold
  - getStartRange
```
public int getStartRange()
```
    Gets the starting range of pixels.
    
    Returns:
    
    starting range
  - getTotalPixels
```
public int getTotalPixels()
```
    Gets the total pixel count.
    
    Returns:
    
    total number of pixels in histogram
  - registerFrame
```
public void registerFrame(java.awt.Frame frame)
```
    Registers the image Frame.
    
    Parameters:
    
    frame - - Frame to be registered with image model so when the image model changes the view of the image will change
  - setEndRange
```
public void setEndRange(int end)
```
    Sets the ending range of histogram.
    
    Parameters:
    
    end - end range of histogram
  - setMaxEntropyThreshold
```
public void setMaxEntropyThreshold(int thres)
```
    Sets maximum entropy threshold.
    
    Parameters:
    
    thres - int threshold
  - setMean
```
public void setMean(double mean)
```
    Sets mean intensity of histogram.
    
    Parameters:
    
    mean - mean value of intensity
  - setMode
```
public void setMode(int mode)
```
    Sets the mode intensity of histogram.
    
    Parameters:
    
    mode - mode value of intensity
  - setOtsuThreshold
```
public void setOtsuThreshold(int otsu)
```
    Sets the Otsu threshold.
    
    Parameters:
    
    otsu - int threshold
  - setStartRange
```
public void setStartRange(int start)
```
    Sets the starting range of histogram.
    
    Parameters:
    
    start - start range of histogram
  - setTotalPixels
```
public void setTotalPixels(int pixels)
```
    Sets total number of pixels of histogram.
    
    Parameters:
    
    pixels - total number of pixels
  - unregisterFrame
```
public void unregisterFrame(java.awt.Frame frame)
```
    Unregisters the image Frame.
    
    Parameters:
    
    frame - - Frame to be registered

Class ModelHistogram

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.structures.ModelStorageBase

Field Summary

Fields inherited from class gov.nih.mipav.model.structures.ModelStorageBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.structures.ModelStorageBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

histogramFrameVector

maxEntropyThreshold

mean

mode

otsuThreshold

stRange

endRange

totalPixels

Constructor Detail

ModelHistogram

Method Detail

getEndRange

getMaxEntropyThreshold

getMean

getMode

getOtsuThreshold

getStartRange

getTotalPixels

registerFrame

setEndRange

setMaxEntropyThreshold

setMean

setMode

setOtsuThreshold

setStartRange

setTotalPixels

unregisterFrame