java.lang.Object
- gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis

Enclosing class:: WeibullDistribution

class WeibullDistribution.Analysis
extends java.lang.Object

Field Summary

Fields
Modifier and Type	Field	Description
`double[]`	`adj_ranks`
`java.lang.String`	`bcm`
`double`	`beta`
`double`	`beta_c4`
`double[]`	`beta_f_range`
`double`	`beta_hrbu`
`double`	`beta_init`
`double[]`	`beta_lrb`
`double`	`beta_np_bs`
`double`	`beta_p_bs`
`double[]`	`beta_range_init`
`java.lang.String`	`bounds`
`double[]`	`bounds_lower`
`java.lang.String`	`bounds_type`
`double[]`	`bounds_upper`
`int`	`bs_size`
`java.lang.String`	`censoring`
`double`	`cl`
`double`	`cl_lrb`
`double[]`	`df`
`double[]`	`ds`
`java.lang.String`	`est_type`
`double`	`eta`
`double`	`eta_c4`
`double[]`	`eta_f_range`
`double`	`eta_hrbu`
`double[]`	`eta_lrb`
`double`	`eta_np_bs`
`double`	`eta_p_bs`
`double[]`	`eta_range_init`
`double[][]`	`f_inv`
`double`	`k_a_bound`
`(package private) java.lang.String`	`path`
`(package private) java.lang.String`	`plot_title`
`(package private) double`	`pvalue`
`(package private) double`	`rvalue`
`boolean`	`save`
`double`	`se_beta`
`double`	`se_eta`
`boolean`	`show`
`double`	`sol_b`
`double`	`sol_eta`
`float`	`tmax_plot`
`float`	`tmin_plot`
`double[]`	`unrel`
`java.lang.String`	`x_label`
`java.lang.String`	`y_label`
`double[][]`	`z`

Constructor Summary

Constructors
Constructor	Description
`Analysis(double[] df, double[] ds, java.lang.String bounds, java.lang.String bounds_type, java.lang.String bcm, int bs_size, java.lang.String est_type, double cl, boolean show, boolean save, java.lang.String x_label, java.lang.String y_label, java.lang.String plot_title, java.lang.String path)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`bb_bounds()`
`double[]`	`bernard(double[] adj_r, int n, double cl)`
`double`	`beta_init(double[] df, double[] ds)`
`WeibullDistribution.Pair<java.lang.Double,java.lang.Integer>[]`	`cen_index(double[] df, double[] ds)`
`void`	`fisher_bounds()`
`double[]`	`inverse_weibull(double[] perc, double beta, double eta)`
`double[][]`	`ll_full(double[][] beta_, double[][] eta, double[] df, double[] ds)`
`double`	`ll_full(double beta_, double eta, double[] df, double[] ds)`
`double[][]`	`ll_full_no_cens(double[][] beta_, double[][] eta, double[] df)`
`double`	`ll_full_no_cens(double beta_, double eta, double[] df)`
`void`	`lrb()`
`void`	`mcp_bounds()`
`double[]`	`median_rank(double cl)`
`double[]`	`median_rank_cens(double cl)`
`void`	`mle()`
`void`	`mrr()`
`private void`	`np_bootstrap(double[] beta_return, double[] eta_return, double[] sample, int bs_size, java.lang.String est_type)`
`void`	`npbb_bounds(java.lang.String method_call)`
`private void`	`p_bootstrap(double[] beta_return, double[] eta_return, double[] sample, int bs_size, java.lang.String est_type)`
`void`	`pb_bounds(java.lang.String method_call)`
`void`	`plot()`
`void`	`plot_mrr()`
`void`	`t_bounds_from_pars(double[] beta_, double[] eta, double[] unreliability)`
`double[]`	`unrel_func(double[] x_est, double beta_, double eta)`
`double[]`	`weibull_prob_paper(double[] x)`
`void`	`zerofinder(java.util.Vector<java.lang.Double> beta_pairs_lrb, java.util.Vector<java.lang.Double> eta_pairs_lrb, double[] b_init, double[] eta_init, double[][] z)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

df
```
public double[] df
```

ds
```
public double[] ds
```

bounds
```
public java.lang.String bounds
```

bounds_type
```
public java.lang.String bounds_type
```

bcm
```
public java.lang.String bcm
```

bs_size
```
public int bs_size
```

est_type
```
public java.lang.String est_type
```

cl
```
public double cl
```

show
```
public boolean show
```

save
```
public boolean save
```

x_label
```
public java.lang.String x_label
```

y_label
```
public java.lang.String y_label
```

plot_title
```
java.lang.String plot_title
```

path
```
java.lang.String path
```

cl_lrb
```
public double cl_lrb
```

beta
```
public double beta
```

eta
```
public double eta
```

beta_c4
```
public double beta_c4
```

eta_c4
```
public double eta_c4
```

beta_hrbu
```
public double beta_hrbu
```

eta_hrbu
```
public double eta_hrbu
```

beta_np_bs
```
public double beta_np_bs
```

eta_np_bs
```
public double eta_np_bs
```

beta_p_bs
```
public double beta_p_bs
```

eta_p_bs
```
public double eta_p_bs
```

beta_init
```
public double beta_init
```

censoring
```
public java.lang.String censoring
```

k_a_bound
```
public double k_a_bound
```

f_inv
```
public double[][] f_inv
```

se_beta
```
public double se_beta
```

se_eta
```
public double se_eta
```

unrel
```
public double[] unrel
```

bounds_lower
```
public double[] bounds_lower
```

bounds_upper
```
public double[] bounds_upper
```

sol_b
```
public double sol_b
```

sol_eta
```
public double sol_eta
```

beta_f_range
```
public double[] beta_f_range
```

eta_f_range
```
public double[] eta_f_range
```

beta_range_init
```
public double[] beta_range_init
```

eta_range_init
```
public double[] eta_range_init
```

z
```
public double[][] z
```

beta_lrb
```
public double[] beta_lrb
```

eta_lrb
```
public double[] eta_lrb
```

tmin_plot
```
public float tmin_plot
```

tmax_plot
```
public float tmax_plot
```

adj_ranks
```
public double[] adj_ranks
```

rvalue
```
double rvalue
```

pvalue
```
double pvalue
```

Constructor Detail

Analysis

public Analysis(double[] df,
                double[] ds,
                java.lang.String bounds,
                java.lang.String bounds_type,
                java.lang.String bcm,
                int bs_size,
                java.lang.String est_type,
                double cl,
                boolean show,
                boolean save,
                java.lang.String x_label,
                java.lang.String y_label,
                java.lang.String plot_title,
                java.lang.String path)

Method Detail

mle
```
public void mle()
```

beta_init

public double beta_init(double[] df,
                        double[] ds)

np_bootstrap

private void np_bootstrap(double[] beta_return,
                          double[] eta_return,
                          double[] sample,
                          int bs_size,
                          java.lang.String est_type)

p_bootstrap

private void p_bootstrap(double[] beta_return,
                         double[] eta_return,
                         double[] sample,
                         int bs_size,
                         java.lang.String est_type)

fisher_bounds
```
public void fisher_bounds()
```

lrb
```
public void lrb()
```

ll_full_no_cens

public double ll_full_no_cens(double beta_,
                              double eta,
                              double[] df)

ll_full_no_cens

public double[][] ll_full_no_cens(double[][] beta_,
                                  double[][] eta,
                                  double[] df)

ll_full

public double ll_full(double beta_,
                      double eta,
                      double[] df,
                      double[] ds)

ll_full

public double[][] ll_full(double[][] beta_,
                          double[][] eta,
                          double[] df,
                          double[] ds)

zerofinder

public void zerofinder(java.util.Vector<java.lang.Double> beta_pairs_lrb,
                       java.util.Vector<java.lang.Double> eta_pairs_lrb,
                       double[] b_init,
                       double[] eta_init,
                       double[][] z)

t_bounds_from_pars

public void t_bounds_from_pars(double[] beta_,
                               double[] eta,
                               double[] unreliability)

cen_index

public WeibullDistribution.Pair<java.lang.Double,java.lang.Integer>[] cen_index(double[] df,
                                                                                      double[] ds)

npbb_bounds

public void npbb_bounds(java.lang.String method_call)

pb_bounds

public void pb_bounds(java.lang.String method_call)

weibull_prob_paper

public double[] weibull_prob_paper(double[] x)

unrel_func

public double[] unrel_func(double[] x_est,
                           double beta_,
                           double eta)

inverse_weibull

public double[] inverse_weibull(double[] perc,
                                double beta,
                                double eta)

plot
```
public void plot()
```

median_rank

public double[] median_rank(double cl)

bernard

public double[] bernard(double[] adj_r,
                        int n,
                        double cl)

median_rank_cens

public double[] median_rank_cens(double cl)

mrr
```
public void mrr()
```

bb_bounds
```
public void bb_bounds()
```

mcp_bounds
```
public void mcp_bounds()
```

plot_mrr
```
public void plot_mrr()
```

Class WeibullDistribution.Analysis

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

df

ds

bounds

bounds_type

bcm

bs_size

est_type

cl

show

save

x_label

y_label

plot_title

path

cl_lrb

beta

eta

beta_c4

eta_c4

beta_hrbu

eta_hrbu

beta_np_bs

eta_np_bs

beta_p_bs

eta_p_bs

beta_init

censoring

k_a_bound

f_inv

se_beta

se_eta

unrel

bounds_lower

bounds_upper

sol_b

sol_eta

beta_f_range

eta_f_range

beta_range_init

eta_range_init

z

beta_lrb

eta_lrb

tmin_plot

tmax_plot

adj_ranks

rvalue

pvalue

Constructor Detail

Analysis

Method Detail

mle

beta_init

np_bootstrap

p_bootstrap

fisher_bounds

lrb

ll_full_no_cens

ll_full_no_cens

ll_full

ll_full

zerofinder

t_bounds_from_pars

cen_index

npbb_bounds

pb_bounds

weibull_prob_paper

unrel_func

inverse_weibull

plot

median_rank

bernard

median_rank_cens

mrr