java.lang.Object
- gov.nih.mipav.model.file.FileBase
- - gov.nih.mipav.model.file.FileLSM

```
public class FileLSM
extends FileBase
```
Reads Zeiss LSM 510 image files - an extension of the TIFF format. However, ordinary TIFF format supports both Little Endian(0x4949 or II) byte order and Big Endian (0x4d4d or MM) byte order. LSM supports only Little Endian byte order. NEW_SUBFILE_TYPE can be either 0 for images or 1 for thumbnails. The reader will skip over thumbnails and not include them in the read image. COMPRESSION can be either 1 for no compression or 5 for LZW compression.
One big difference between standard TIFF and the LSM format is the inclusion of the private CZ_LSMINFO tag. The pixel resolutions must be obtained from the VoxelSizeX, VoxelSizeY, and VoxelSizeZ fields in this private tag. This private tag appears only in the first image directory, so fileInfo.set operations must cycle thru all the slices using the values obtained when reading the first slice.

The x and y resolution units are always be in meters. LSM data may be 1, 2, or 3 channels. 1 data is black and white. Both 2 and 3 channels are RGB although in 2 channels only 2 of the 3 colors are used. LSM format uses either 8 bit unsigned data, 12 bit unsigned data, or 32 bit floats. Ths 12 bit unsigned data is stored in 16 bit shorts. If 2 or 3 channels use 12 bit unsigned data, then ARGB_USHORT format must be used, a format not found in ordinary TIFF. If a LSM file has 4 or more channels, then create another dimension in which to put each spectrum. The color map values are scaled to go only to 255.0 since a value of 65535 was observed in the unscaled map.

Ordinary TIFF uses the SAMPLE_FORMAT FIELD to specify how to interpret data with 1 = unsigned integer data, 2 = two's complement signed integer data, 3 = IEEE floating point data, and 4 = undefined data format. The default is 1, unsigned integer data. LSM files do not include the SAMPLE_FORMAT field, so if only TIFF rules were used the LSM 32 bit floating point numbers would be interpreted as unsigned integers.

The LSM release 6.0 documentation does not completely conform with the observed files. Table 16 with the CZ-Private tag shows a 488 byte structure, but at least some LSM files have values of 512 bytes in the s32StructureSize field. u32OffsetTimeStamps appears to point to a time stamps structure, but this structure contains the ascii such as Ch1-T1, Ch2-T2, and Ch3-T3 which does not appear in the table 22 structure for time stamp information. u32OffsetNextRecording appears to point to the start of a new structure, but it is not a second file header.

See Also:

FileIO, FileInfoLSM

Nested Class Summary

Nested Classes
Modifier and Type Class Description

private class FileLSM.Index
Simple class to store image offsets and bytes located at the offset.

Field Summary

Fields
Modifier and Type	Field	Description
`private static int`	`ASCII`	DOCUMENT ME!
`private static int`	`BEAMSPLITTER_ENTRY_FILTER`	DOCUMENT ME!
`private static int`	`BEAMSPLITTER_ENTRY_FILTER_SET`	DOCUMENT ME!
`private static int`	`BEAMSPLITTER_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`BITS_PER_SAMPLE`	DOCUMENT ME!
`private static int`	`BLEACH_ROI`	DOCUMENT ME!
`private int`	`bleachedROIShape`	DOCUMENT ME!
`private double[]`	`bleachKnotX`	DOCUMENT ME!
`private double[]`	`bleachKnotY`	DOCUMENT ME!
`private int[]`	`blueArray`	DOCUMENT ME!
`private int`	`blueOffset`	DOCUMENT ME!
`private static int`	`BYTE`	TIFF Types.
`private byte[]`	`byteBuffer`	DOCUMENT ME!
`private int[]`	`channelDataTypes`	DOCUMENT ME!
`private java.lang.String[]`	`channelNames`	DOCUMENT ME!
`private boolean`	`chunky`	DOCUMENT ME!
`private static int`	`CIRCLE`	DOCUMENT ME!
`private static int`	`CLOSED_BEZIER`	DOCUMENT ME!
`private static int`	`CLOSED_POLYLINE`	DOCUMENT ME!
`private static int`	`COLOR_MAP`	DOCUMENT ME!
`private static int`	`COMPRESSION`	DOCUMENT ME!
`private static int`	`CZ_LSMINFO`	DOCUMENT ME!
`private int`	`czChannels`	DOCUMENT ME!
`private int`	`czDataType`	DOCUMENT ME!
`private int`	`czDataType2`	DOCUMENT ME!
`private int`	`czDimT`	DOCUMENT ME!
`private int`	`czDimX`	DOCUMENT ME!
`private int`	`czDimY`	DOCUMENT ME!
`private int`	`czDimZ`	DOCUMENT ME!
`private int`	`czScanType`	DOCUMENT ME!
`private int`	`czSpectralScan`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_ACQUIRE`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_BITSPERSAMPLE`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_COLOR`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_DYE_FOLDER`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_DYE_NAME`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CHANNEL1`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CHANNEL2`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CONST1`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CONST2`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CONST3`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CONST4`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CONST5`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_CONST6`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES1`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES2`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_TRACK1`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_TRACK2`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_RATIO_TYPE`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_SAMPLETYPE`	DOCUMENT ME!
`private static int`	`DATACHANNEL_ENTRY_SPECTRUM`	DOCUMENT ME!
`private java.util.Vector<FileLSM.Index>[]`	`dataOffsets`
`private static int`	`DATE_TIME`	DOCUMENT ME!
`private byte[]`	`dateTime`	DOCUMENT ME!
`private byte[]`	`decomp`	DOCUMENT ME!
`private static int`	`DETCHANNEL_AMPLIFIER_GAIN_BC1`	DOCUMENT ME!
`private static int`	`DETCHANNEL_AMPLIFIER_GAIN_BC2`	DOCUMENT ME!
`private static int`	`DETCHANNEL_AMPLIFIER_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_AMPLIFIER_OFFSET_BC1`	DOCUMENT ME!
`private static int`	`DETCHANNEL_AMPLIFIER_OFFSET_BC2`	DOCUMENT ME!
`private static int`	`DETCHANNEL_DETECTION_CHANNEL_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_DETECTOR_GAIN_BC1`	DOCUMENT ME!
`private static int`	`DETCHANNEL_DETECTOR_GAIN_BC2`	DOCUMENT ME!
`private static int`	`DETCHANNEL_DYE_FOLDER`	DOCUMENT ME!
`private static int`	`DETCHANNEL_DYE_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_ACQUIRE`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_AMPLIFIER_GAIN_FIRST`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_AMPLIFIER_GAIN_LAST`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_AMPLIFIER_OFFS_FIRST`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_AMPLIFIER_OFFS_LAST`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_COUNTING_TRIGGER`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_DETECTOR_GAIN_FIRST`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_DETECTOR_GAIN_LAST`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_INTEGRATION_MODE`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_PINHOLE_DIAMETER`	DOCUMENT ME!
`private static int`	`DETCHANNEL_ENTRY_SPECIAL_MODE`	DOCUMENT ME!
`private static int`	`DETCHANNEL_FILTER_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_FILTER_SET_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_INTEGRATOR_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_PINHOLE_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_POINT_DETECTOR_NAME`	DOCUMENT ME!
`private static int`	`DETCHANNEL_SPECTRAL_SCAN_CHANNELS`	DOCUMENT ME!
`private static int`	`DETCHANNEL_SPI_WAVELENGTH_END`	DOCUMENT ME!
`private static int`	`DETCHANNEL_SPI_WAVELENGTH_START`	DOCUMENT ME!
`private int`	`dimensionM`
`private int`	`dimensionP`
`private int[]`	`dimensionsReserved`
`private double`	`displayAspectTime`	DOCUMENT ME!
`private double`	`displayAspectX`	DOCUMENT ME!
`private double`	`displayAspectY`	DOCUMENT ME!
`private double`	`displayAspectZ`	DOCUMENT ME!
`private boolean`	`doTile`	DOCUMENT ME!
`private static int`	`DOUBLE`	DOCUMENT ME!
`private int`	`drawingElement`	DOCUMENT ME!
`private static int`	`ELLIPSE`	DOCUMENT ME!
`private boolean`	`endianess`	DOCUMENT ME!
`private java.lang.String[]`	`eventDescription`	DOCUMENT ME!
`private double[]`	`eventTime`	DOCUMENT ME!
`private int[]`	`eventType`	DOCUMENT ME!
`private java.io.File`	`file`	DOCUMENT ME!
`private int`	`fileDataType`	DOCUMENT ME!
`private java.lang.String`	`fileDir`	DOCUMENT ME!
`private FileInfoLSM`	`fileInfo`	DOCUMENT ME!
`private java.lang.String`	`fileName`	DOCUMENT ME!
`private int`	`firstSliceAfterBleach`	DOCUMENT ME!
`private static int`	`FLOAT`	DOCUMENT ME!
`private int[]`	`greenArray`	DOCUMENT ME!
`private int`	`greenOffset`	DOCUMENT ME!
`private boolean`	`haveBleachedBezier`	DOCUMENT ME!
`private boolean`	`haveBleachedCircle`	DOCUMENT ME!
`private boolean`	`haveBleachedCirclePerim3`	DOCUMENT ME!
`private boolean`	`haveBleachedEllipse`	DOCUMENT ME!
`private boolean`	`haveBleachedPolyline`	DOCUMENT ME!
`private boolean`	`haveBleachedRectangle`	DOCUMENT ME!
`private int[]`	`IFDoffsets`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_DETCHANNEL_NAME`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_ENTRY_ACQUIRE`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_ENTRY_POWER`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_ENTRY_WAVELENGTH`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_POWER_BC1`	DOCUMENT ME!
`private static int`	`ILLUMCHANNEL_POWER_BC2`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private static int`	`IMAGE_DESCRIPTION`	DOCUMENT ME!
`private static int`	`IMAGE_LENGTH`	DOCUMENT ME!
`private static int`	`IMAGE_WIDTH`	DOCUMENT ME!
`private byte[]`	`imageDescription`	DOCUMENT ME!
`private int`	`imageSlice`	DOCUMENT ME!
`private float[][]`	`img3DMultiBuffer`	DOCUMENT ME!
`private float[]`	`imgBuffer`	DOCUMENT ME!
`private float[]`	`imgResols`	DOCUMENT ME!
`private static int`	`INPUT_LUT`	Types of LUTS.
`private int`	`internalUse1`
`private double[]`	`knotX`	DOCUMENT ME!
`private double[]`	`knotY`	DOCUMENT ME!
`private static int`	`LASER_ENTRY_ACQUIRE`	DOCUMENT ME!
`private static int`	`LASER_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`LASER_ENTRY_POWER`	DOCUMENT ME!
`private int`	`lastSliceBeforeBleach`	DOCUMENT ME!
`private static int`	`LINESCAN_OVERLAY`	DOCUMENT ME!
`private static int`	`LONG`	DOCUMENT ME!
`private ModelLUT`	`LUT`	DOCUMENT ME!
`private int`	`lutKind`	DOCUMENT ME!
`private boolean`	`lzwCompression`	DOCUMENT ME!
`private TIFFLZWDecoder`	`lzwDecoder`	DOCUMENT ME!
`private boolean`	`manySpectrums`	DOCUMENT ME!
`private static int`	`MARKER_ENTRY_DESCRIPTION`	DOCUMENT ME!
`private static int`	`MARKER_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`MARKER_ENTRY_TRIGGER_IN`	DOCUMENT ME!
`private static int`	`MARKER_ENTRY_TRIGGER_OUT`	DOCUMENT ME!
`private static int`	`MAX_SAMPLE_VALUE`	DOCUMENT ME!
`private static int`	`MEANOFROIS_OVERLAY`	DOCUMENT ME!
`private static int`	`MIN_SAMPLE_VALUE`	DOCUMENT ME!
`private int`	`mono`	DOCUMENT ME!
`private static int`	`NEW_SUBFILE_TYPE`	TIFF Tags.
`private int`	`numberColors`	DOCUMENT ME!
`private double`	`objectiveSphereCorrection`	DOCUMENT ME!
`private int`	`offsetAcquisitionParameters`
`private int`	`offsetBleachRoi`	DOCUMENT ME!
`private int`	`offsetChannelColors`	DOCUMENT ME!
`private int`	`offsetChannelDataTypes`	DOCUMENT ME!
`private int`	`offsetChannelFactors`	DOCUMENT ME!
`private int`	`offsetChannelWavelength`	DOCUMENT ME!
`private int`	`offsetCharacteristics`
`private int`	`offsetEventList`	DOCUMENT ME!
`private int`	`offsetInputLut`	DOCUMENT ME!
`private int`	`offsetKsData`	DOCUMENT ME!
`private int`	`offsetLinescanOverlay`	DOCUMENT ME!
`private int`	`offsetMeanOfRoisOverlay`	DOCUMENT ME!
`private int`	`offsetOutputLut`	DOCUMENT ME!
`private int`	`offsetPalette`
`private int`	`offsetPositions`
`private int`	`offsetRoi`	DOCUMENT ME!
`private int`	`offsetScanInformation`	DOCUMENT ME!
`private int`	`offsetTilePositions`
`private int`	`offsetTimeStamps`	DOCUMENT ME!
`private int`	`offsetTopolsolineOverlay`	DOCUMENT ME!
`private int`	`offsetTopoProfileOverlay`	DOCUMENT ME!
`private int`	`offsetUnmixParameters`	DOCUMENT ME!
`private int`	`offsetVectorOverlay`	DOCUMENT ME!
`private static int`	`OLEDB_RECORDING_ENTRY_SCAN_MODE`	DOCUMENT ME!
`private double`	`originX`	The x-offset of the center of the image in meter relative to the optical axis.
`private double`	`originY`	The y-offset of the center of the image in meter relative to the optical axis.
`private static int`	`OUTPUT_LUT`	DOCUMENT ME!
`private boolean`	`packBit`	DOCUMENT ME!
`private static int`	`PHOTO_INTERP`	3 = CCITT-T4, 4 = CCITT-T6, 5 = LZW, 32773 = packbits.
`private VOI`	`photoBleachedVOI`	DOCUMENT ME!
`private static int`	`PLANAR_CONFIG`	DOCUMENT ME!
`private int`	`predictor`	DOCUMENT ME!
`private static int`	`PREDICTOR`	DOCUMENT ME!
`private static int`	`RATIONAL`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_CAMERA_BINNING`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_CAMERA_FRAME_HEIGHT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_CAMERA_FRAME_WIDTH`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_CAMERA_OFFSETX`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_CAMERA_OFFSETY`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_CAMERA_SUPERSAMPLING`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_DESCRIPTION`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_IMAGES_HEIGHT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_IMAGES_NUMBER_CHANNELS`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_IMAGES_NUMBER_PLANES`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_IMAGES_NUMBER_STACKS`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_IMAGES_WIDTH`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_INTERPOLATIONY`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_LINE_SPACING`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_LINES_PER_PLANE`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_LINSCAN_XY_SIZE`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_NOTES`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_NUMBER_OF_STACKS`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_NUTATION`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_OBJECTIVE`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_ORIGINAL_SCAN_DATA`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_PLANE_HEIGHT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_PLANE_SPACING`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_PLANE_WIDTH`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_PLANES_PER_VOLUME`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_POSITION_BCCORRECTION1`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_POSITION_BCCORRECTION2`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_PRECESSION`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_PRESCAN`
`private static int`	`RECORDING_ENTRY_PROCESSING_SUMMARY`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_ROTATION`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_RT_BINNING`
`private static int`	`RECORDING_ENTRY_RT_FRAME_HEIGHT`
`private static int`	`RECORDING_ENTRY_RT_FRAME_WIDTH`
`private static int`	`RECORDING_ENTRY_RT_LINEPERIOD`
`private static int`	`RECORDING_ENTRY_RT_OFFSETX`
`private static int`	`RECORDING_ENTRY_RT_OFFSETY`
`private static int`	`RECORDING_ENTRY_RT_REGION_HEIGHT`
`private static int`	`RECORDING_ENTRY_RT_REGION_WIDTH`
`private static int`	`RECORDING_ENTRY_RT_ZOOM`
`private static int`	`RECORDING_ENTRY_SAMPLE_0TIME`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SAMPLE_0X`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SAMPLE_0Y`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SAMPLE_0Z`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SAMPLE_SPACING`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SAMPLES_PER_LINE`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SCAN_DIRECTION`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SCAN_DIRECTIONZ`
`private static int`	`RECORDING_ENTRY_SCAN_TYPE`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_SPECIAL_SCAN_MODE`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_START_SCAN_EVENT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_START_SCAN_TIME`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_START_SCAN_TRIGGER_IN`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_START_SCAN_TRIGGER_OUT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_STOP_SCAN_EVENT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_STOP_SCAN_TIME`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_STOP_SCAN_TRIGGER_IN`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_STOP_SCAN_TRIGGER_OUT`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_TIME_SERIES`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_USE_BCCORRECTION`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_USE_REDUCED_MEMORY_ROIS`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_USE_ROIS`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_USER`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_VOLUME_DEPTH`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_ZOOM_X`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_ZOOM_Y`	DOCUMENT ME!
`private static int`	`RECORDING_ENTRY_ZOOM_Z`	DOCUMENT ME!
`private static int`	`RECTANGLE`	Bleached ROI shapes.
`private int[]`	`redArray`	DOCUMENT ME!
`private int`	`redOffset`	Default ordering is red, green, blue.
`private int[]`	`reserved`
`private static int`	`RESOLUTION_UNIT`	DOCUMENT ME!
`private static int`	`ROI`	DOCUMENT ME!
`private static int`	`ROWS_PER_STRIP`	DOCUMENT ME!
`private int`	`rowsPerStrip`	DOCUMENT ME!
`private static int`	`SAMPLE_FORMAT`	DOCUMENT ME!
`private static int`	`SAMPLES_PER_PIXEL`	DOCUMENT ME!
`private int`	`samplesPerPixel`	private short nDirEntries;.
`private static int`	`SBYTE`	2nd denom.
`private int`	`secondAddress`	DOCUMENT ME!
`private int`	`secondImage`	DOCUMENT ME!
`private static int`	`SHORT`	DOCUMENT ME!
`private static int`	`SLONG`	DOCUMENT ME!
`private byte[]`	`software`	DOCUMENT ME!
`private static int`	`SOFTWARE`	DOCUMENT ME!
`private int`	`spectrumNumber`	DOCUMENT ME!
`private static int`	`SRATIONAL`	DOCUMENT ME!
`private static int`	`SSHORT`	DOCUMENT ME!
`private java.lang.String`	`str`	DOCUMENT ME!
`private static int`	`STRIP_BYTE_COUNTS`	DOCUMENT ME!
`private static int`	`STRIP_OFFSETS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_BEAM_SPLITTER`	DOCUMENT ME!
`private static int`	`SUBBLOCK_BEAM_SPLITTERS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_DATA_CHANNEL`	DOCUMENT ME!
`private static int`	`SUBBLOCK_DATA_CHANNELS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_DETECTION_CHANNEL`	DOCUMENT ME!
`private static int`	`SUBBLOCK_DETECTION_CHANNELS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_END`	DOCUMENT ME!
`private static int`	`SUBBLOCK_ILLUMINATION_CHANNEL`	DOCUMENT ME!
`private static int`	`SUBBLOCK_ILLUMINATION_CHANNELS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_LASER`	DOCUMENT ME!
`private static int`	`SUBBLOCK_LASERS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_MARKER`	DOCUMENT ME!
`private static int`	`SUBBLOCK_MARKERS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_RECORDING`	Values for entries in scan information.
`private static int`	`SUBBLOCK_TIMER`	DOCUMENT ME!
`private static int`	`SUBBLOCK_TIMERS`	DOCUMENT ME!
`private static int`	`SUBBLOCK_TRACK`	DOCUMENT ME!
`private static int`	`SUBBLOCK_TRACKS`	DOCUMENT ME!
`private boolean`	`thumbNail`	DOCUMENT ME!
`private long`	`thumbnailOffset`	DOCUMENT ME!
`private int`	`thumbNailX`	DOCUMENT ME!
`private int`	`thumbNailY`	DOCUMENT ME!
`private static int`	`TILE_BYTE_COUNTS`	DOCUMENT ME!
`private static int`	`TILE_LENGTH`	DOCUMENT ME!
`private static int`	`TILE_OFFSETS`	DOCUMENT ME!
`private static int`	`TILE_WIDTH`	DOCUMENT ME!
`private int[]`	`tileByteCounts`	DOCUMENT ME!
`private int`	`tileByteNumber`	DOCUMENT ME!
`private int`	`tileLength`	DOCUMENT ME!
`private int`	`tileMaxByteCount`	DOCUMENT ME!
`private int`	`tileOffsetNumber`	DOCUMENT ME!
`private long[]`	`tileOffsets`	DOCUMENT ME!
`private int`	`tilesAcross`	DOCUMENT ME!
`private int`	`tilesDown`	DOCUMENT ME!
`private int`	`tilesPerImage`	DOCUMENT ME!
`private int`	`tilesPerSlice`	DOCUMENT ME!
`private long[]`	`tileTemp`	DOCUMENT ME!
`private int`	`tileWidth`	DOCUMENT ME!
`private double`	`timeDifferenceX`
`private double`	`timeDifferenceY`
`private double`	`timeDifferenceZ`
`private double`	`timeInterval`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_ACTIVATION_NUMBER`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_ACTIVATION_TIME`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_DESCRIPTION`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_INTERVAL`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_TRIGGER_IN`	DOCUMENT ME!
`private static int`	`TIMER_ENTRY_TRIGGER_OUT`	DOCUMENT ME!
`private double[]`	`timeStamp`	DOCUMENT ME!
`private int`	`toolbarFlags`	DOCUMENT ME!
`private static int`	`TOPOLSOLINE_OVERLAY`	DOCUMENT ME!
`private static int`	`TOPOPROFILE_OVERLAY`	DOCUMENT ME!
`private static int`	`TRACK_BLEACH_PIXEL_TIME`
`private static int`	`TRACK_ENTRY_ACQUIRE`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_BLEACH_COUNT`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_BLEACH_POSITION_Z`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_BLEACH_SCAN_NUMBER`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_COLLIMATOR1_NAME`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_COLLIMATOR1_POSITION`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_COLLIMATOR2_NAME`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_COLLIMATOR2_POSITION`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_CONDENSOR_APERTURE`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_CONDENSOR_FILTER`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_CONDENSOR_FRONTLENS`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ENABLE_SPOT_BLEACH_POS`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_FIELD_STOP_VALUE`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_CONDENSOR_APERTURE`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_CONDENSOR_FRONTLENS`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_CONDENSOR_REVOLVER`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_FIELD_STOP`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_TRANSMISSION_FILTER1`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_TRANSMISSION_FILTER2`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_TRANSMISSION1`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_TRANSMISSION2`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_ID_TUBELENS`
`private static int`	`TRACK_ENTRY_ID_TUBELENS_POSITION`
`private static int`	`TRACK_ENTRY_IS_BLEACH_AFTER_SCAN_NUMBER`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_IS_BLEACH_TRACK`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_IS_RATIO_TRACK`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_MULTIPLEX_ORDER`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_MULTIPLEX_TYPE`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_NAME`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_PIXEL_TIME`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_REPEAT_BLEACH`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SAMPLE_OBSERVATION_TIME`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SAMPLING_METHOD`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SAMPLING_MODE`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SAMPLING_NUMBER`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SPI_CENTER_WAVELENGTH`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SPOT_BLEACH_POSX`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_SPOT_BLEACH_POSY`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_TIME_BETWEEN_STACKS`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_TRIGGER_IN`	DOCUMENT ME!
`private static int`	`TRACK_ENTRY_TRIGGER_OUT`	DOCUMENT ME!
`private static int`	`TRACK_REFLECTED_LIGHT`
`private static int`	`TRACK_SIMULTAN_GRAB_AND_BLEACH`
`private static int`	`TRACK_TRANSMITTED_LIGHT`
`private static int`	`TRESOLUTION`	DOCUMENT ME!
`private static int`	`TYPE_ASCII`	DOCUMENT ME!
`private static int`	`TYPE_LONG`	DOCUMENT ME!
`private static int`	`TYPE_RATIONAL`	DOCUMENT ME!
`private static int`	`TYPE_SUBBLOCK`	Values for types in scan information.
`private ViewUserInterface`	`UI`	DOCUMENT ME!
`private static int`	`UNDEFINED`	DOCUMENT ME!
`private int[]`	`unitsOfMeasure`	DOCUMENT ME!
`private static int`	`VECTOR_OVERLAY`	Types of drawing elements.
`private double`	`voxelSizeX`	DOCUMENT ME!
`private double`	`voxelSizeY`	DOCUMENT ME!
`private double`	`voxelSizeZ`	DOCUMENT ME!
`private int`	`wavelengthNumber`	DOCUMENT ME!
`private double[]`	`wavelengths`	DOCUMENT ME!
`private int`	`xDim`	DOCUMENT ME!
`private static int`	`XRESOLUTION`	DOCUMENT ME!
`private int`	`yDim`	DOCUMENT ME!
`private static int`	`YRESOLUTION`	DOCUMENT ME!
`private int`	`zDim`	DOCUMENT ME!
`private static int`	`ZRESOLUTION`	EchoTech Tiff TAGS.

Fields inherited from class gov.nih.mipav.model.file.FileBase
BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors
Constructor Description

FileLSM(java.lang.String fileName, java.lang.String fileDir, int secondAddress)
LSM reader/writer constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for cleanup.
`FileInfoBase`	`getFileInfo()`	Accessor that returns the file info.
`float[][]`	`getImage3DMultiBuffer()`	Accessor that returns the image buffer.
`float[]`	`getImageBuffer()`	Accessor that returns the image buffer.
`ModelLUT`	`getModelLUT()`	Rreturns LUT if defined.
`int`	`getSecondImage()`	Accessor that returns the address of the TIF header of the second image if present Returns zero if not present.
`private boolean`	`openIFD(FileInfoLSM fileInfo)`	Reads and decodes IFDs (Image File Directory).
`private void`	`readBuffer(int slice, float[] buffer)`	Reads a slice of data at a time and stores the results in the buffer.
`private void`	`readCZPrivateTag()`	DOCUMENT ME!
`private void`	`readDrawingElement()`	DOCUMENT ME!
`ModelImage`	`readImage(boolean multiFile, boolean one)`	Reads the Tiff header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD.
`private void`	`readKsData()`	DOCUMENT ME!
`private void`	`readLut()`	DOCUMENT ME!
`private void`	`readOffsetAcquisitionParameters()`
`private void`	`readOffsetChannelFactors()`	DOCUMENT ME!
`private void`	`readOffsetCharacteristics()`
`private void`	`readOffsetPalette()`
`private void`	`readOffsetPositions()`
`private void`	`readOffsetTilePositions()`
`private void`	`readOffsetUnmixParameters()`	DOCUMENT ME!
`private void`	`readScanInformation()`	DOCUMENT ME!
`private void`	`readTileBuffer(int slice, float[] buffer)`	Reads a slice of data at a time and stores the results in the buffer.
`void`	`setFileName(java.lang.String fName)`	Accessor to set the file name (used when reading TIFF multiFile).

Methods inherited from class gov.nih.mipav.model.file.FileBase
addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - BYTE
```
private static final int BYTE
```
    TIFF Types.
    
    See Also:
    
    Constant Field Values
  - ASCII
```
private static final int ASCII
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SHORT
```
private static final int SHORT
```
    DOCUMENT ME!
    
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    Constant Field Values
  - LONG
```
private static final int LONG
```
    DOCUMENT ME!
    
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    Constant Field Values
  - RATIONAL
```
private static final int RATIONAL
```
    DOCUMENT ME!
    
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    Constant Field Values
  - SBYTE
```
private static final int SBYTE
```
    2nd denom.
    
    See Also:
    
    Constant Field Values
  - UNDEFINED
```
private static final int UNDEFINED
```
    DOCUMENT ME!
    
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    Constant Field Values
  - SSHORT
```
private static final int SSHORT
```
    DOCUMENT ME!
    
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    Constant Field Values
  - SLONG
```
private static final int SLONG
```
    DOCUMENT ME!
    
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    Constant Field Values
  - SRATIONAL
```
private static final int SRATIONAL
```
    DOCUMENT ME!
    
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    Constant Field Values
  - FLOAT
```
private static final int FLOAT
```
    DOCUMENT ME!
    
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    Constant Field Values
  - DOUBLE
```
private static final int DOUBLE
```
    DOCUMENT ME!
    
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    Constant Field Values
  - NEW_SUBFILE_TYPE
```
private static final int NEW_SUBFILE_TYPE
```
    TIFF Tags.
    
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    Constant Field Values
  - IMAGE_WIDTH
```
private static final int IMAGE_WIDTH
```
    DOCUMENT ME!
    
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    Constant Field Values
  - IMAGE_LENGTH
```
private static final int IMAGE_LENGTH
```
    DOCUMENT ME!
    
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    Constant Field Values
  - BITS_PER_SAMPLE
```
private static final int BITS_PER_SAMPLE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - COMPRESSION
```
private static final int COMPRESSION
```
    DOCUMENT ME!
    
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    Constant Field Values
  - PHOTO_INTERP
```
private static final int PHOTO_INTERP
```
    3 = CCITT-T4, 4 = CCITT-T6, 5 = LZW, 32773 = packbits.
    
    See Also:
    
    Constant Field Values
  - IMAGE_DESCRIPTION
```
private static final int IMAGE_DESCRIPTION
```
    DOCUMENT ME!
    
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    Constant Field Values
  - STRIP_OFFSETS
```
private static final int STRIP_OFFSETS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SAMPLES_PER_PIXEL
```
private static final int SAMPLES_PER_PIXEL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ROWS_PER_STRIP
```
private static final int ROWS_PER_STRIP
```
    DOCUMENT ME!
    
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    Constant Field Values
  - STRIP_BYTE_COUNTS
```
private static final int STRIP_BYTE_COUNTS
```
    DOCUMENT ME!
    
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    Constant Field Values
  - MIN_SAMPLE_VALUE
```
private static final int MIN_SAMPLE_VALUE
```
    DOCUMENT ME!
    
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    Constant Field Values
  - MAX_SAMPLE_VALUE
```
private static final int MAX_SAMPLE_VALUE
```
    DOCUMENT ME!
    
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    Constant Field Values
  - XRESOLUTION
```
private static final int XRESOLUTION
```
    DOCUMENT ME!
    
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    Constant Field Values
  - YRESOLUTION
```
private static final int YRESOLUTION
```
    DOCUMENT ME!
    
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    Constant Field Values
  - PLANAR_CONFIG
```
private static final int PLANAR_CONFIG
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RESOLUTION_UNIT
```
private static final int RESOLUTION_UNIT
```
    DOCUMENT ME!
    
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    Constant Field Values
  - SOFTWARE
```
private static final int SOFTWARE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATE_TIME
```
private static final int DATE_TIME
```
    DOCUMENT ME!
    
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    Constant Field Values
  - PREDICTOR
```
private static final int PREDICTOR
```
    DOCUMENT ME!
    
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    Constant Field Values
  - COLOR_MAP
```
private static final int COLOR_MAP
```
    DOCUMENT ME!
    
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    Constant Field Values
  - TILE_WIDTH
```
private static final int TILE_WIDTH
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TILE_LENGTH
```
private static final int TILE_LENGTH
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TILE_OFFSETS
```
private static final int TILE_OFFSETS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TILE_BYTE_COUNTS
```
private static final int TILE_BYTE_COUNTS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SAMPLE_FORMAT
```
private static final int SAMPLE_FORMAT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CZ_LSMINFO
```
private static final int CZ_LSMINFO
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_RECORDING
```
private static final int SUBBLOCK_RECORDING
```
    Values for entries in scan information.
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_LASERS
```
private static final int SUBBLOCK_LASERS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_LASER
```
private static final int SUBBLOCK_LASER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_TRACKS
```
private static final int SUBBLOCK_TRACKS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_TRACK
```
private static final int SUBBLOCK_TRACK
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_DETECTION_CHANNELS
```
private static final int SUBBLOCK_DETECTION_CHANNELS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_DETECTION_CHANNEL
```
private static final int SUBBLOCK_DETECTION_CHANNEL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_ILLUMINATION_CHANNELS
```
private static final int SUBBLOCK_ILLUMINATION_CHANNELS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_ILLUMINATION_CHANNEL
```
private static final int SUBBLOCK_ILLUMINATION_CHANNEL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_BEAM_SPLITTERS
```
private static final int SUBBLOCK_BEAM_SPLITTERS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_BEAM_SPLITTER
```
private static final int SUBBLOCK_BEAM_SPLITTER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_DATA_CHANNELS
```
private static final int SUBBLOCK_DATA_CHANNELS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_DATA_CHANNEL
```
private static final int SUBBLOCK_DATA_CHANNEL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_TIMERS
```
private static final int SUBBLOCK_TIMERS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_TIMER
```
private static final int SUBBLOCK_TIMER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_MARKERS
```
private static final int SUBBLOCK_MARKERS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_MARKER
```
private static final int SUBBLOCK_MARKER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - SUBBLOCK_END
```
private static final int SUBBLOCK_END
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_NAME
```
private static final int RECORDING_ENTRY_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_DESCRIPTION
```
private static final int RECORDING_ENTRY_DESCRIPTION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_NOTES
```
private static final int RECORDING_ENTRY_NOTES
```
    DOCUMENT ME!
    
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    Constant Field Values
  - RECORDING_ENTRY_OBJECTIVE
```
private static final int RECORDING_ENTRY_OBJECTIVE
```
    DOCUMENT ME!
    
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    Constant Field Values
  - RECORDING_ENTRY_PROCESSING_SUMMARY
```
private static final int RECORDING_ENTRY_PROCESSING_SUMMARY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SPECIAL_SCAN_MODE
```
private static final int RECORDING_ENTRY_SPECIAL_SCAN_MODE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SCAN_TYPE
```
private static final int RECORDING_ENTRY_SCAN_TYPE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - OLEDB_RECORDING_ENTRY_SCAN_MODE
```
private static final int OLEDB_RECORDING_ENTRY_SCAN_MODE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_NUMBER_OF_STACKS
```
private static final int RECORDING_ENTRY_NUMBER_OF_STACKS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_LINES_PER_PLANE
```
private static final int RECORDING_ENTRY_LINES_PER_PLANE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SAMPLES_PER_LINE
```
private static final int RECORDING_ENTRY_SAMPLES_PER_LINE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_PLANES_PER_VOLUME
```
private static final int RECORDING_ENTRY_PLANES_PER_VOLUME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_IMAGES_WIDTH
```
private static final int RECORDING_ENTRY_IMAGES_WIDTH
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_IMAGES_HEIGHT
```
private static final int RECORDING_ENTRY_IMAGES_HEIGHT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_IMAGES_NUMBER_PLANES
```
private static final int RECORDING_ENTRY_IMAGES_NUMBER_PLANES
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_IMAGES_NUMBER_STACKS
```
private static final int RECORDING_ENTRY_IMAGES_NUMBER_STACKS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_IMAGES_NUMBER_CHANNELS
```
private static final int RECORDING_ENTRY_IMAGES_NUMBER_CHANNELS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_LINSCAN_XY_SIZE
```
private static final int RECORDING_ENTRY_LINSCAN_XY_SIZE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SCAN_DIRECTION
```
private static final int RECORDING_ENTRY_SCAN_DIRECTION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_TIME_SERIES
```
private static final int RECORDING_ENTRY_TIME_SERIES
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_ORIGINAL_SCAN_DATA
```
private static final int RECORDING_ENTRY_ORIGINAL_SCAN_DATA
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_ZOOM_X
```
private static final int RECORDING_ENTRY_ZOOM_X
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_ZOOM_Y
```
private static final int RECORDING_ENTRY_ZOOM_Y
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_ZOOM_Z
```
private static final int RECORDING_ENTRY_ZOOM_Z
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SAMPLE_0X
```
private static final int RECORDING_ENTRY_SAMPLE_0X
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SAMPLE_0Y
```
private static final int RECORDING_ENTRY_SAMPLE_0Y
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SAMPLE_0Z
```
private static final int RECORDING_ENTRY_SAMPLE_0Z
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SAMPLE_SPACING
```
private static final int RECORDING_ENTRY_SAMPLE_SPACING
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_LINE_SPACING
```
private static final int RECORDING_ENTRY_LINE_SPACING
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_PLANE_SPACING
```
private static final int RECORDING_ENTRY_PLANE_SPACING
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_PLANE_WIDTH
```
private static final int RECORDING_ENTRY_PLANE_WIDTH
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_PLANE_HEIGHT
```
private static final int RECORDING_ENTRY_PLANE_HEIGHT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_VOLUME_DEPTH
```
private static final int RECORDING_ENTRY_VOLUME_DEPTH
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_ROTATION
```
private static final int RECORDING_ENTRY_ROTATION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_NUTATION
```
private static final int RECORDING_ENTRY_NUTATION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_PRECESSION
```
private static final int RECORDING_ENTRY_PRECESSION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SAMPLE_0TIME
```
private static final int RECORDING_ENTRY_SAMPLE_0TIME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_START_SCAN_TRIGGER_IN
```
private static final int RECORDING_ENTRY_START_SCAN_TRIGGER_IN
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_START_SCAN_TRIGGER_OUT
```
private static final int RECORDING_ENTRY_START_SCAN_TRIGGER_OUT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_START_SCAN_EVENT
```
private static final int RECORDING_ENTRY_START_SCAN_EVENT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_START_SCAN_TIME
```
private static final int RECORDING_ENTRY_START_SCAN_TIME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_STOP_SCAN_TRIGGER_IN
```
private static final int RECORDING_ENTRY_STOP_SCAN_TRIGGER_IN
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_STOP_SCAN_TRIGGER_OUT
```
private static final int RECORDING_ENTRY_STOP_SCAN_TRIGGER_OUT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_STOP_SCAN_EVENT
```
private static final int RECORDING_ENTRY_STOP_SCAN_EVENT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_STOP_SCAN_TIME
```
private static final int RECORDING_ENTRY_STOP_SCAN_TIME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_USE_ROIS
```
private static final int RECORDING_ENTRY_USE_ROIS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_USE_REDUCED_MEMORY_ROIS
```
private static final int RECORDING_ENTRY_USE_REDUCED_MEMORY_ROIS
```
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    Constant Field Values
  - RECORDING_ENTRY_USER
```
private static final int RECORDING_ENTRY_USER
```
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    Constant Field Values
  - RECORDING_ENTRY_USE_BCCORRECTION
```
private static final int RECORDING_ENTRY_USE_BCCORRECTION
```
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    Constant Field Values
  - RECORDING_ENTRY_POSITION_BCCORRECTION1
```
private static final int RECORDING_ENTRY_POSITION_BCCORRECTION1
```
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    Constant Field Values
  - RECORDING_ENTRY_POSITION_BCCORRECTION2
```
private static final int RECORDING_ENTRY_POSITION_BCCORRECTION2
```
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    Constant Field Values
  - RECORDING_ENTRY_INTERPOLATIONY
```
private static final int RECORDING_ENTRY_INTERPOLATIONY
```
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    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_CAMERA_BINNING
```
private static final int RECORDING_ENTRY_CAMERA_BINNING
```
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    Constant Field Values
  - RECORDING_ENTRY_CAMERA_SUPERSAMPLING
```
private static final int RECORDING_ENTRY_CAMERA_SUPERSAMPLING
```
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    Constant Field Values
  - RECORDING_ENTRY_CAMERA_FRAME_WIDTH
```
private static final int RECORDING_ENTRY_CAMERA_FRAME_WIDTH
```
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    Constant Field Values
  - RECORDING_ENTRY_CAMERA_FRAME_HEIGHT
```
private static final int RECORDING_ENTRY_CAMERA_FRAME_HEIGHT
```
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    Constant Field Values
  - RECORDING_ENTRY_CAMERA_OFFSETX
```
private static final int RECORDING_ENTRY_CAMERA_OFFSETX
```
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    Constant Field Values
  - RECORDING_ENTRY_CAMERA_OFFSETY
```
private static final int RECORDING_ENTRY_CAMERA_OFFSETY
```
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    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_RT_BINNING
```
private static final int RECORDING_ENTRY_RT_BINNING
```
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    Constant Field Values
  - RECORDING_ENTRY_RT_FRAME_WIDTH
```
private static final int RECORDING_ENTRY_RT_FRAME_WIDTH
```
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_RT_FRAME_HEIGHT
```
private static final int RECORDING_ENTRY_RT_FRAME_HEIGHT
```
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    Constant Field Values
  - RECORDING_ENTRY_RT_REGION_WIDTH
```
private static final int RECORDING_ENTRY_RT_REGION_WIDTH
```
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    Constant Field Values
  - RECORDING_ENTRY_RT_REGION_HEIGHT
```
private static final int RECORDING_ENTRY_RT_REGION_HEIGHT
```
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_RT_OFFSETX
```
private static final int RECORDING_ENTRY_RT_OFFSETX
```
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    Constant Field Values
  - RECORDING_ENTRY_RT_OFFSETY
```
private static final int RECORDING_ENTRY_RT_OFFSETY
```
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    Constant Field Values
  - RECORDING_ENTRY_RT_ZOOM
```
private static final int RECORDING_ENTRY_RT_ZOOM
```
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_RT_LINEPERIOD
```
private static final int RECORDING_ENTRY_RT_LINEPERIOD
```
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_PRESCAN
```
private static final int RECORDING_ENTRY_PRESCAN
```
    See Also:
    
    Constant Field Values
  - RECORDING_ENTRY_SCAN_DIRECTIONZ
```
private static final int RECORDING_ENTRY_SCAN_DIRECTIONZ
```
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    Constant Field Values
  - TRACK_ENTRY_MULTIPLEX_TYPE
```
private static final int TRACK_ENTRY_MULTIPLEX_TYPE
```
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    Constant Field Values
  - TRACK_ENTRY_MULTIPLEX_ORDER
```
private static final int TRACK_ENTRY_MULTIPLEX_ORDER
```
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    Constant Field Values
  - TRACK_ENTRY_SAMPLING_MODE
```
private static final int TRACK_ENTRY_SAMPLING_MODE
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_SAMPLING_METHOD
```
private static final int TRACK_ENTRY_SAMPLING_METHOD
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_SAMPLING_NUMBER
```
private static final int TRACK_ENTRY_SAMPLING_NUMBER
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ACQUIRE
```
private static final int TRACK_ENTRY_ACQUIRE
```
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    Constant Field Values
  - TRACK_ENTRY_SAMPLE_OBSERVATION_TIME
```
private static final int TRACK_ENTRY_SAMPLE_OBSERVATION_TIME
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_TIME_BETWEEN_STACKS
```
private static final int TRACK_ENTRY_TIME_BETWEEN_STACKS
```
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    Constant Field Values
  - TRACK_ENTRY_NAME
```
private static final int TRACK_ENTRY_NAME
```
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    Constant Field Values
  - TRACK_ENTRY_COLLIMATOR1_NAME
```
private static final int TRACK_ENTRY_COLLIMATOR1_NAME
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_COLLIMATOR1_POSITION
```
private static final int TRACK_ENTRY_COLLIMATOR1_POSITION
```
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    Constant Field Values
  - TRACK_ENTRY_COLLIMATOR2_NAME
```
private static final int TRACK_ENTRY_COLLIMATOR2_NAME
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_COLLIMATOR2_POSITION
```
private static final int TRACK_ENTRY_COLLIMATOR2_POSITION
```
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    Constant Field Values
  - TRACK_ENTRY_IS_BLEACH_TRACK
```
private static final int TRACK_ENTRY_IS_BLEACH_TRACK
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_IS_BLEACH_AFTER_SCAN_NUMBER
```
private static final int TRACK_ENTRY_IS_BLEACH_AFTER_SCAN_NUMBER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_BLEACH_SCAN_NUMBER
```
private static final int TRACK_ENTRY_BLEACH_SCAN_NUMBER
```
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    Constant Field Values
  - TRACK_ENTRY_TRIGGER_IN
```
private static final int TRACK_ENTRY_TRIGGER_IN
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_TRIGGER_OUT
```
private static final int TRACK_ENTRY_TRIGGER_OUT
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_IS_RATIO_TRACK
```
private static final int TRACK_ENTRY_IS_RATIO_TRACK
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_BLEACH_COUNT
```
private static final int TRACK_ENTRY_BLEACH_COUNT
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_SPI_CENTER_WAVELENGTH
```
private static final int TRACK_ENTRY_SPI_CENTER_WAVELENGTH
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_PIXEL_TIME
```
private static final int TRACK_ENTRY_PIXEL_TIME
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ID_CONDENSOR_FRONTLENS
```
private static final int TRACK_ENTRY_ID_CONDENSOR_FRONTLENS
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_CONDENSOR_FRONTLENS
```
private static final int TRACK_ENTRY_CONDENSOR_FRONTLENS
```
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    Constant Field Values
  - TRACK_ENTRY_ID_FIELD_STOP
```
private static final int TRACK_ENTRY_ID_FIELD_STOP
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_FIELD_STOP_VALUE
```
private static final int TRACK_ENTRY_FIELD_STOP_VALUE
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ID_CONDENSOR_APERTURE
```
private static final int TRACK_ENTRY_ID_CONDENSOR_APERTURE
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_CONDENSOR_APERTURE
```
private static final int TRACK_ENTRY_CONDENSOR_APERTURE
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ID_CONDENSOR_REVOLVER
```
private static final int TRACK_ENTRY_ID_CONDENSOR_REVOLVER
```
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    Constant Field Values
  - TRACK_ENTRY_CONDENSOR_FILTER
```
private static final int TRACK_ENTRY_CONDENSOR_FILTER
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ID_TRANSMISSION_FILTER1
```
private static final int TRACK_ENTRY_ID_TRANSMISSION_FILTER1
```
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    Constant Field Values
  - TRACK_ENTRY_ID_TRANSMISSION1
```
private static final int TRACK_ENTRY_ID_TRANSMISSION1
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ID_TRANSMISSION_FILTER2
```
private static final int TRACK_ENTRY_ID_TRANSMISSION_FILTER2
```
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    Constant Field Values
  - TRACK_ENTRY_ID_TRANSMISSION2
```
private static final int TRACK_ENTRY_ID_TRANSMISSION2
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_REPEAT_BLEACH
```
private static final int TRACK_ENTRY_REPEAT_BLEACH
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ENABLE_SPOT_BLEACH_POS
```
private static final int TRACK_ENTRY_ENABLE_SPOT_BLEACH_POS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_SPOT_BLEACH_POSX
```
private static final int TRACK_ENTRY_SPOT_BLEACH_POSX
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_SPOT_BLEACH_POSY
```
private static final int TRACK_ENTRY_SPOT_BLEACH_POSY
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_BLEACH_POSITION_Z
```
private static final int TRACK_ENTRY_BLEACH_POSITION_Z
```
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    See Also:
    
    Constant Field Values
  - TRACK_ENTRY_ID_TUBELENS
```
private static final int TRACK_ENTRY_ID_TUBELENS
```
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    Constant Field Values
  - TRACK_ENTRY_ID_TUBELENS_POSITION
```
private static final int TRACK_ENTRY_ID_TUBELENS_POSITION
```
    See Also:
    
    Constant Field Values
  - TRACK_TRANSMITTED_LIGHT
```
private static final int TRACK_TRANSMITTED_LIGHT
```
    See Also:
    
    Constant Field Values
  - TRACK_REFLECTED_LIGHT
```
private static final int TRACK_REFLECTED_LIGHT
```
    See Also:
    
    Constant Field Values
  - TRACK_SIMULTAN_GRAB_AND_BLEACH
```
private static final int TRACK_SIMULTAN_GRAB_AND_BLEACH
```
    See Also:
    
    Constant Field Values
  - TRACK_BLEACH_PIXEL_TIME
```
private static final int TRACK_BLEACH_PIXEL_TIME
```
    See Also:
    
    Constant Field Values
  - LASER_ENTRY_NAME
```
private static final int LASER_ENTRY_NAME
```
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    See Also:
    
    Constant Field Values
  - LASER_ENTRY_ACQUIRE
```
private static final int LASER_ENTRY_ACQUIRE
```
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    See Also:
    
    Constant Field Values
  - LASER_ENTRY_POWER
```
private static final int LASER_ENTRY_POWER
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_INTEGRATION_MODE
```
private static final int DETCHANNEL_ENTRY_INTEGRATION_MODE
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_SPECIAL_MODE
```
private static final int DETCHANNEL_ENTRY_SPECIAL_MODE
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_DETECTOR_GAIN_FIRST
```
private static final int DETCHANNEL_ENTRY_DETECTOR_GAIN_FIRST
```
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    Constant Field Values
  - DETCHANNEL_ENTRY_DETECTOR_GAIN_LAST
```
private static final int DETCHANNEL_ENTRY_DETECTOR_GAIN_LAST
```
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    Constant Field Values
  - DETCHANNEL_ENTRY_AMPLIFIER_GAIN_FIRST
```
private static final int DETCHANNEL_ENTRY_AMPLIFIER_GAIN_FIRST
```
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    Constant Field Values
  - DETCHANNEL_ENTRY_AMPLIFIER_GAIN_LAST
```
private static final int DETCHANNEL_ENTRY_AMPLIFIER_GAIN_LAST
```
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    Constant Field Values
  - DETCHANNEL_ENTRY_AMPLIFIER_OFFS_FIRST
```
private static final int DETCHANNEL_ENTRY_AMPLIFIER_OFFS_FIRST
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_AMPLIFIER_OFFS_LAST
```
private static final int DETCHANNEL_ENTRY_AMPLIFIER_OFFS_LAST
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_PINHOLE_DIAMETER
```
private static final int DETCHANNEL_ENTRY_PINHOLE_DIAMETER
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_COUNTING_TRIGGER
```
private static final int DETCHANNEL_ENTRY_COUNTING_TRIGGER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_ENTRY_ACQUIRE
```
private static final int DETCHANNEL_ENTRY_ACQUIRE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_POINT_DETECTOR_NAME
```
private static final int DETCHANNEL_POINT_DETECTOR_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_AMPLIFIER_NAME
```
private static final int DETCHANNEL_AMPLIFIER_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_PINHOLE_NAME
```
private static final int DETCHANNEL_PINHOLE_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_FILTER_SET_NAME
```
private static final int DETCHANNEL_FILTER_SET_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_FILTER_NAME
```
private static final int DETCHANNEL_FILTER_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_INTEGRATOR_NAME
```
private static final int DETCHANNEL_INTEGRATOR_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_DETECTION_CHANNEL_NAME
```
private static final int DETCHANNEL_DETECTION_CHANNEL_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_DETECTOR_GAIN_BC1
```
private static final int DETCHANNEL_DETECTOR_GAIN_BC1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_DETECTOR_GAIN_BC2
```
private static final int DETCHANNEL_DETECTOR_GAIN_BC2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_AMPLIFIER_GAIN_BC1
```
private static final int DETCHANNEL_AMPLIFIER_GAIN_BC1
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_AMPLIFIER_GAIN_BC2
```
private static final int DETCHANNEL_AMPLIFIER_GAIN_BC2
```
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    See Also:
    
    Constant Field Values
  - DETCHANNEL_AMPLIFIER_OFFSET_BC1
```
private static final int DETCHANNEL_AMPLIFIER_OFFSET_BC1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_AMPLIFIER_OFFSET_BC2
```
private static final int DETCHANNEL_AMPLIFIER_OFFSET_BC2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_SPECTRAL_SCAN_CHANNELS
```
private static final int DETCHANNEL_SPECTRAL_SCAN_CHANNELS
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_SPI_WAVELENGTH_START
```
private static final int DETCHANNEL_SPI_WAVELENGTH_START
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_SPI_WAVELENGTH_END
```
private static final int DETCHANNEL_SPI_WAVELENGTH_END
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_DYE_NAME
```
private static final int DETCHANNEL_DYE_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DETCHANNEL_DYE_FOLDER
```
private static final int DETCHANNEL_DYE_FOLDER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_ENTRY_NAME
```
private static final int ILLUMCHANNEL_ENTRY_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_ENTRY_POWER
```
private static final int ILLUMCHANNEL_ENTRY_POWER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_ENTRY_WAVELENGTH
```
private static final int ILLUMCHANNEL_ENTRY_WAVELENGTH
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_ENTRY_ACQUIRE
```
private static final int ILLUMCHANNEL_ENTRY_ACQUIRE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_DETCHANNEL_NAME
```
private static final int ILLUMCHANNEL_DETCHANNEL_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_POWER_BC1
```
private static final int ILLUMCHANNEL_POWER_BC1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ILLUMCHANNEL_POWER_BC2
```
private static final int ILLUMCHANNEL_POWER_BC2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - BEAMSPLITTER_ENTRY_FILTER_SET
```
private static final int BEAMSPLITTER_ENTRY_FILTER_SET
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - BEAMSPLITTER_ENTRY_FILTER
```
private static final int BEAMSPLITTER_ENTRY_FILTER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - BEAMSPLITTER_ENTRY_NAME
```
private static final int BEAMSPLITTER_ENTRY_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_NAME
```
private static final int DATACHANNEL_ENTRY_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_COLOR
```
private static final int DATACHANNEL_ENTRY_COLOR
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_SAMPLETYPE
```
private static final int DATACHANNEL_ENTRY_SAMPLETYPE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_BITSPERSAMPLE
```
private static final int DATACHANNEL_ENTRY_BITSPERSAMPLE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_TYPE
```
private static final int DATACHANNEL_ENTRY_RATIO_TYPE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_TRACK1
```
private static final int DATACHANNEL_ENTRY_RATIO_TRACK1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_TRACK2
```
private static final int DATACHANNEL_ENTRY_RATIO_TRACK2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CHANNEL1
```
private static final int DATACHANNEL_ENTRY_RATIO_CHANNEL1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CHANNEL2
```
private static final int DATACHANNEL_ENTRY_RATIO_CHANNEL2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CONST1
```
private static final int DATACHANNEL_ENTRY_RATIO_CONST1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CONST2
```
private static final int DATACHANNEL_ENTRY_RATIO_CONST2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CONST3
```
private static final int DATACHANNEL_ENTRY_RATIO_CONST3
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CONST4
```
private static final int DATACHANNEL_ENTRY_RATIO_CONST4
```
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    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CONST5
```
private static final int DATACHANNEL_ENTRY_RATIO_CONST5
```
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    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_CONST6
```
private static final int DATACHANNEL_ENTRY_RATIO_CONST6
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES1
```
private static final int DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES1
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES2
```
private static final int DATACHANNEL_ENTRY_RATIO_FIRST_IMAGES2
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_DYE_NAME
```
private static final int DATACHANNEL_ENTRY_DYE_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_DYE_FOLDER
```
private static final int DATACHANNEL_ENTRY_DYE_FOLDER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_SPECTRUM
```
private static final int DATACHANNEL_ENTRY_SPECTRUM
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - DATACHANNEL_ENTRY_ACQUIRE
```
private static final int DATACHANNEL_ENTRY_ACQUIRE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_NAME
```
private static final int TIMER_ENTRY_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_DESCRIPTION
```
private static final int TIMER_ENTRY_DESCRIPTION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_INTERVAL
```
private static final int TIMER_ENTRY_INTERVAL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_TRIGGER_IN
```
private static final int TIMER_ENTRY_TRIGGER_IN
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_TRIGGER_OUT
```
private static final int TIMER_ENTRY_TRIGGER_OUT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_ACTIVATION_TIME
```
private static final int TIMER_ENTRY_ACTIVATION_TIME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TIMER_ENTRY_ACTIVATION_NUMBER
```
private static final int TIMER_ENTRY_ACTIVATION_NUMBER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - MARKER_ENTRY_NAME
```
private static final int MARKER_ENTRY_NAME
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - MARKER_ENTRY_DESCRIPTION
```
private static final int MARKER_ENTRY_DESCRIPTION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - MARKER_ENTRY_TRIGGER_IN
```
private static final int MARKER_ENTRY_TRIGGER_IN
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - MARKER_ENTRY_TRIGGER_OUT
```
private static final int MARKER_ENTRY_TRIGGER_OUT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TYPE_SUBBLOCK
```
private static final int TYPE_SUBBLOCK
```
    Values for types in scan information.
    
    See Also:
    
    Constant Field Values
  - TYPE_LONG
```
private static final int TYPE_LONG
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TYPE_RATIONAL
```
private static final int TYPE_RATIONAL
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TYPE_ASCII
```
private static final int TYPE_ASCII
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - RECTANGLE
```
private static final int RECTANGLE
```
    Bleached ROI shapes.
    
    See Also:
    
    Constant Field Values
  - ELLIPSE
```
private static final int ELLIPSE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CLOSED_POLYLINE
```
private static final int CLOSED_POLYLINE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CLOSED_BEZIER
```
private static final int CLOSED_BEZIER
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - CIRCLE
```
private static final int CIRCLE
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - VECTOR_OVERLAY
```
private static final int VECTOR_OVERLAY
```
    Types of drawing elements.
    
    See Also:
    
    Constant Field Values
  - ROI
```
private static final int ROI
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - BLEACH_ROI
```
private static final int BLEACH_ROI
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - MEANOFROIS_OVERLAY
```
private static final int MEANOFROIS_OVERLAY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TOPOLSOLINE_OVERLAY
```
private static final int TOPOLSOLINE_OVERLAY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - TOPOPROFILE_OVERLAY
```
private static final int TOPOPROFILE_OVERLAY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - LINESCAN_OVERLAY
```
private static final int LINESCAN_OVERLAY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - INPUT_LUT
```
private static final int INPUT_LUT
```
    Types of LUTS.
    
    See Also:
    
    Constant Field Values
  - OUTPUT_LUT
```
private static final int OUTPUT_LUT
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - ZRESOLUTION
```
private static final int ZRESOLUTION
```
    EchoTech Tiff TAGS.
    
    See Also:
    
    Constant Field Values
  - TRESOLUTION
```
private static final int TRESOLUTION
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - bleachedROIShape
```
private int bleachedROIShape
```
    DOCUMENT ME!
  - bleachKnotX
```
private double[] bleachKnotX
```
    DOCUMENT ME!
  - bleachKnotY
```
private double[] bleachKnotY
```
    DOCUMENT ME!
  - blueArray
```
private int[] blueArray
```
    DOCUMENT ME!
  - blueOffset
```
private int blueOffset
```
    DOCUMENT ME!
  - byteBuffer
```
private byte[] byteBuffer
```
    DOCUMENT ME!
  - channelDataTypes
```
private int[] channelDataTypes
```
    DOCUMENT ME!
  - channelNames
```
private java.lang.String[] channelNames
```
    DOCUMENT ME!
  - chunky
```
private boolean chunky
```
    DOCUMENT ME!
  - czChannels
```
private int czChannels
```
    DOCUMENT ME!
  - czDataType
```
private int czDataType
```
    DOCUMENT ME!
  - czDataType2
```
private int czDataType2
```
    DOCUMENT ME!
  - czDimT
```
private int czDimT
```
    DOCUMENT ME!
  - czDimX
```
private int czDimX
```
    DOCUMENT ME!
  - czDimY
```
private int czDimY
```
    DOCUMENT ME!
  - czDimZ
```
private int czDimZ
```
    DOCUMENT ME!
  - czScanType
```
private int czScanType
```
    DOCUMENT ME!
  - czSpectralScan
```
private int czSpectralScan
```
    DOCUMENT ME!
  - dataOffsets
```
private java.util.Vector<FileLSM.Index>[] dataOffsets
```
  - dateTime
```
private byte[] dateTime
```
    DOCUMENT ME!
  - decomp
```
private byte[] decomp
```
    DOCUMENT ME!
  - dimensionM
```
private int dimensionM
```
  - dimensionP
```
private int dimensionP
```
  - dimensionsReserved
```
private int[] dimensionsReserved
```
  - displayAspectTime
```
private double displayAspectTime
```
    DOCUMENT ME!
  - displayAspectX
```
private double displayAspectX
```
    DOCUMENT ME!
  - displayAspectY
```
private double displayAspectY
```
    DOCUMENT ME!
  - displayAspectZ
```
private double displayAspectZ
```
    DOCUMENT ME!
  - doTile
```
private boolean doTile
```
    DOCUMENT ME!
  - drawingElement
```
private int drawingElement
```
    DOCUMENT ME!
  - endianess
```
private boolean endianess
```
    DOCUMENT ME!
  - eventDescription
```
private java.lang.String[] eventDescription
```
    DOCUMENT ME!
  - eventTime
```
private double[] eventTime
```
    DOCUMENT ME!
  - eventType
```
private int[] eventType
```
    DOCUMENT ME!
  - file
```
private java.io.File file
```
    DOCUMENT ME!
  - fileDataType
```
private int fileDataType
```
    DOCUMENT ME!
  - fileDir
```
private java.lang.String fileDir
```
    DOCUMENT ME!
  - fileInfo
```
private FileInfoLSM fileInfo
```
    DOCUMENT ME!
  - fileName
```
private java.lang.String fileName
```
    DOCUMENT ME!
  - firstSliceAfterBleach
```
private int firstSliceAfterBleach
```
    DOCUMENT ME!
  - greenArray
```
private int[] greenArray
```
    DOCUMENT ME!
  - greenOffset
```
private int greenOffset
```
    DOCUMENT ME!
  - haveBleachedBezier
```
private boolean haveBleachedBezier
```
    DOCUMENT ME!
  - haveBleachedCircle
```
private boolean haveBleachedCircle
```
    DOCUMENT ME!
  - haveBleachedCirclePerim3
```
private boolean haveBleachedCirclePerim3
```
    DOCUMENT ME!
  - haveBleachedEllipse
```
private boolean haveBleachedEllipse
```
    DOCUMENT ME!
  - haveBleachedPolyline
```
private boolean haveBleachedPolyline
```
    DOCUMENT ME!
  - haveBleachedRectangle
```
private boolean haveBleachedRectangle
```
    DOCUMENT ME!
  - IFDoffsets
```
private int[] IFDoffsets
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - imageDescription
```
private byte[] imageDescription
```
    DOCUMENT ME!
  - imageSlice
```
private int imageSlice
```
    DOCUMENT ME!
  - img3DMultiBuffer
```
private float[][] img3DMultiBuffer
```
    DOCUMENT ME!
  - imgBuffer
```
private float[] imgBuffer
```
    DOCUMENT ME!
  - imgResols
```
private float[] imgResols
```
    DOCUMENT ME!
  - internalUse1
```
private int internalUse1
```
  - knotX
```
private double[] knotX
```
    DOCUMENT ME!
  - knotY
```
private double[] knotY
```
    DOCUMENT ME!
  - lastSliceBeforeBleach
```
private int lastSliceBeforeBleach
```
    DOCUMENT ME!
  - LUT
```
private ModelLUT LUT
```
    DOCUMENT ME!
  - lutKind
```
private int lutKind
```
    DOCUMENT ME!
  - lzwCompression
```
private boolean lzwCompression
```
    DOCUMENT ME!
  - lzwDecoder
```
private TIFFLZWDecoder lzwDecoder
```
    DOCUMENT ME!
  - manySpectrums
```
private boolean manySpectrums
```
    DOCUMENT ME!
  - mono
```
private int mono
```
    DOCUMENT ME!
  - numberColors
```
private int numberColors
```
    DOCUMENT ME!
  - objectiveSphereCorrection
```
private double objectiveSphereCorrection
```
    DOCUMENT ME!
  - offsetAcquisitionParameters
```
private int offsetAcquisitionParameters
```
  - offsetBleachRoi
```
private int offsetBleachRoi
```
    DOCUMENT ME!
  - offsetChannelColors
```
private int offsetChannelColors
```
    DOCUMENT ME!
  - offsetChannelDataTypes
```
private int offsetChannelDataTypes
```
    DOCUMENT ME!
  - offsetChannelFactors
```
private int offsetChannelFactors
```
    DOCUMENT ME!
  - offsetChannelWavelength
```
private int offsetChannelWavelength
```
    DOCUMENT ME!
  - offsetCharacteristics
```
private int offsetCharacteristics
```
  - offsetEventList
```
private int offsetEventList
```
    DOCUMENT ME!
  - offsetInputLut
```
private int offsetInputLut
```
    DOCUMENT ME!
  - offsetKsData
```
private int offsetKsData
```
    DOCUMENT ME!
  - offsetLinescanOverlay
```
private int offsetLinescanOverlay
```
    DOCUMENT ME!
  - offsetMeanOfRoisOverlay
```
private int offsetMeanOfRoisOverlay
```
    DOCUMENT ME!
  - offsetOutputLut
```
private int offsetOutputLut
```
    DOCUMENT ME!
  - offsetRoi
```
private int offsetRoi
```
    DOCUMENT ME!
  - offsetPalette
```
private int offsetPalette
```
  - offsetPositions
```
private int offsetPositions
```
  - offsetScanInformation
```
private int offsetScanInformation
```
    DOCUMENT ME!
  - offsetTilePositions
```
private int offsetTilePositions
```
  - offsetTimeStamps
```
private int offsetTimeStamps
```
    DOCUMENT ME!
  - offsetTopolsolineOverlay
```
private int offsetTopolsolineOverlay
```
    DOCUMENT ME!
  - offsetTopoProfileOverlay
```
private int offsetTopoProfileOverlay
```
    DOCUMENT ME!
  - offsetUnmixParameters
```
private int offsetUnmixParameters
```
    DOCUMENT ME!
  - offsetVectorOverlay
```
private int offsetVectorOverlay
```
    DOCUMENT ME!
  - originX
```
private double originX
```
    The x-offset of the center of the image in meter relative to the optical axis. For LSM images the x-direction is the direction of the x-scanner. In releases prior to 4.0 the entry was not used and the value 0 was written instead.
  - originY
```
private double originY
```
    The y-offset of the center of the image in meter relative to the optical axis. For LSM images the y-direction is the direction of the y-scanner. In releases prior to 4.0 the entry was not used and the value 0 was written instead.
  - packBit
```
private boolean packBit
```
    DOCUMENT ME!
  - photoBleachedVOI
```
private VOI photoBleachedVOI
```
    DOCUMENT ME!
  - predictor
```
private int predictor
```
    DOCUMENT ME!
  - redArray
```
private int[] redArray
```
    DOCUMENT ME!
  - redOffset
```
private int redOffset
```
    Default ordering is red, green, blue.
  - reserved
```
private int[] reserved
```
  - rowsPerStrip
```
private int rowsPerStrip
```
    DOCUMENT ME!
  - samplesPerPixel
```
private int samplesPerPixel
```
    private short nDirEntries;.
  - secondAddress
```
private int secondAddress
```
    DOCUMENT ME!
  - secondImage
```
private int secondImage
```
    DOCUMENT ME!
  - software
```
private byte[] software
```
    DOCUMENT ME!
  - spectrumNumber
```
private int spectrumNumber
```
    DOCUMENT ME!
  - str
```
private java.lang.String str
```
    DOCUMENT ME!
  - thumbNail
```
private boolean thumbNail
```
    DOCUMENT ME!
  - thumbnailOffset
```
private long thumbnailOffset
```
    DOCUMENT ME!
  - thumbNailX
```
private int thumbNailX
```
    DOCUMENT ME!
  - thumbNailY
```
private int thumbNailY
```
    DOCUMENT ME!
  - tileByteCounts
```
private int[] tileByteCounts
```
    DOCUMENT ME!
  - tileByteNumber
```
private int tileByteNumber
```
    DOCUMENT ME!
  - tileLength
```
private int tileLength
```
    DOCUMENT ME!
  - tileMaxByteCount
```
private int tileMaxByteCount
```
    DOCUMENT ME!
  - tileOffsetNumber
```
private int tileOffsetNumber
```
    DOCUMENT ME!
  - tileOffsets
```
private long[] tileOffsets
```
    DOCUMENT ME!
  - tilesAcross
```
private int tilesAcross
```
    DOCUMENT ME!
  - tilesDown
```
private int tilesDown
```
    DOCUMENT ME!
  - tilesPerImage
```
private int tilesPerImage
```
    DOCUMENT ME!
  - tilesPerSlice
```
private int tilesPerSlice
```
    DOCUMENT ME!
  - tileTemp
```
private long[] tileTemp
```
    DOCUMENT ME!
  - tileWidth
```
private int tileWidth
```
    DOCUMENT ME!
  - timeDifferenceX
```
private double timeDifferenceX
```
  - timeDifferenceY
```
private double timeDifferenceY
```
  - timeDifferenceZ
```
private double timeDifferenceZ
```
  - timeInterval
```
private double timeInterval
```
    DOCUMENT ME!
  - timeStamp
```
private double[] timeStamp
```
    DOCUMENT ME!
  - toolbarFlags
```
private int toolbarFlags
```
    DOCUMENT ME!
  - UI
```
private ViewUserInterface UI
```
    DOCUMENT ME!
  - unitsOfMeasure
```
private int[] unitsOfMeasure
```
    DOCUMENT ME!
  - voxelSizeX
```
private double voxelSizeX
```
    DOCUMENT ME!
  - voxelSizeY
```
private double voxelSizeY
```
    DOCUMENT ME!
  - voxelSizeZ
```
private double voxelSizeZ
```
    DOCUMENT ME!
  - wavelengthNumber
```
private int wavelengthNumber
```
    DOCUMENT ME!
  - wavelengths
```
private double[] wavelengths
```
    DOCUMENT ME!
  - xDim
```
private int xDim
```
    DOCUMENT ME!
  - yDim
```
private int yDim
```
    DOCUMENT ME!
  - zDim
```
private int zDim
```
    DOCUMENT ME!
- Constructor Detail
  - FileLSM
```
public FileLSM(java.lang.String fileName,
               java.lang.String fileDir,
               int secondAddress)
        throws java.io.IOException
```
    LSM reader/writer constructor.
    
    Parameters:
    
    fileName - file name
    
    fileDir - file directory
    
    secondAddress - the position within the image file to begin reading from
    
    Throws:
    
    java.io.IOException - if there is an error making the file
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for cleanup. Calls the finalize method for existing elements, closes any open files and sets other elements to null.
    
    Overrides:
    
    finalize in class FileBase
  - getFileInfo
```
public FileInfoBase getFileInfo()
```
    Accessor that returns the file info.
    
    Returns:
    
    FileInfoBase containing the file info
  - getImage3DMultiBuffer
```
public float[][] getImage3DMultiBuffer()
```
    Accessor that returns the image buffer.
    
    Returns:
    
    buffer of image.
  - getImageBuffer
```
public float[] getImageBuffer()
```
    Accessor that returns the image buffer.
    
    Returns:
    
    buffer of image.
  - getModelLUT
```
public ModelLUT getModelLUT()
```
    Rreturns LUT if defined.
    
    Returns:
    
    the LUT if defined else it is null
  - getSecondImage
```
public int getSecondImage()
```
    Accessor that returns the address of the TIF header of the second image if present Returns zero if not present.
    
    Returns:
    
    secondImage
  - readImage
```
public ModelImage readImage(boolean multiFile,
                            boolean one)
                     throws java.io.IOException
```
    Reads the Tiff header which indicates endianess, the TIFF magic number, and the offset in bytes of the first IFD. It then reads all the IFDs. This method then opens a Model of an image and imports the the images one slice at a time. Image slices are separated by an IFD.
    
    Parameters:
    
    multiFile - true if a set of files each containing a separate 2D image is present false if one file with either a 2D image or a stack of 2D images
    
    one - DOCUMENT ME!
    
    Returns:
    
    returns the image
    
    Throws:
    
    java.io.IOException - if there is an error reading the file
  - setFileName
```
public void setFileName(java.lang.String fName)
```
    Accessor to set the file name (used when reading TIFF multiFile).
    
    Parameters:
    
    fName - file name of image to read.
  - openIFD
```
private boolean openIFD(FileInfoLSM fileInfo)
                 throws java.io.IOException
```
    Reads and decodes IFDs (Image File Directory).
    
    Parameters:
    
    fileInfo - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
    
    Throws:
    
    java.io.IOException - if there is an error reading the file
  - readBuffer
```
private void readBuffer(int slice,
                        float[] buffer)
                 throws java.io.IOException
```
    Reads a slice of data at a time and stores the results in the buffer.
    
    Parameters:
    
    slice - offset into the file stored in the dataOffset array
    
    buffer - buffer where the info is stored
    
    Throws:
    
    java.io.IOException - if there is an error reading the file
  - readCZPrivateTag
```
private void readCZPrivateTag()
                       throws java.io.IOException
```
    DOCUMENT ME!
    
    Throws:
    
    java.io.IOException - DOCUMENT ME!
  - readDrawingElement
```
private void readDrawingElement()
                         throws java.io.IOException
```
    DOCUMENT ME!
    
    Throws:
    
    java.io.IOException - DOCUMENT ME!
  - readKsData
```
private void readKsData()
```
    DOCUMENT ME!
  - readLut
```
private void readLut()
              throws java.io.IOException
```
    DOCUMENT ME!
    
    Throws:
    
    java.io.IOException - DOCUMENT ME!
  - readOffsetAcquisitionParameters
```
private void readOffsetAcquisitionParameters()
                                      throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - readOffsetChannelFactors
```
private void readOffsetChannelFactors()
                               throws java.io.IOException
```
    DOCUMENT ME!
    
    Throws:
    
    java.io.IOException - DOCUMENT ME!
  - readOffsetCharacteristics
```
private void readOffsetCharacteristics()
                                throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - readOffsetPalette
```
private void readOffsetPalette()
                        throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - readOffsetPositions
```
private void readOffsetPositions()
                          throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - readOffsetTilePositions
```
private void readOffsetTilePositions()
                              throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - readOffsetUnmixParameters
```
private void readOffsetUnmixParameters()
```
    DOCUMENT ME!
  - readScanInformation
```
private void readScanInformation()
                          throws java.io.IOException
```
    DOCUMENT ME!
    
    Throws:
    
    java.io.IOException - DOCUMENT ME!
  - readTileBuffer
```
private void readTileBuffer(int slice,
                            float[] buffer)
                     throws java.io.IOException
```
    Reads a slice of data at a time and stores the results in the buffer.
    
    Parameters:
    
    slice - image slice
    
    buffer - buffer where the info is stored
    
    Throws:
    
    java.io.IOException - if there is an error reading the file

Class FileLSM

Nested Class Summary

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileBase

Methods inherited from class java.lang.Object

Field Detail

BYTE

ASCII

SHORT

LONG

RATIONAL

SBYTE

UNDEFINED

SSHORT

SLONG

SRATIONAL

FLOAT

DOUBLE

NEW_SUBFILE_TYPE

IMAGE_WIDTH

IMAGE_LENGTH

BITS_PER_SAMPLE

COMPRESSION

PHOTO_INTERP

IMAGE_DESCRIPTION

STRIP_OFFSETS

SAMPLES_PER_PIXEL

ROWS_PER_STRIP

STRIP_BYTE_COUNTS

MIN_SAMPLE_VALUE

MAX_SAMPLE_VALUE

XRESOLUTION

YRESOLUTION

PLANAR_CONFIG

RESOLUTION_UNIT

SOFTWARE

DATE_TIME

PREDICTOR

COLOR_MAP

TILE_WIDTH

TILE_LENGTH

TILE_OFFSETS

TILE_BYTE_COUNTS

SAMPLE_FORMAT

CZ_LSMINFO

SUBBLOCK_RECORDING

SUBBLOCK_LASERS

SUBBLOCK_LASER

SUBBLOCK_TRACKS

SUBBLOCK_TRACK

SUBBLOCK_DETECTION_CHANNELS

SUBBLOCK_DETECTION_CHANNEL

SUBBLOCK_ILLUMINATION_CHANNELS

SUBBLOCK_ILLUMINATION_CHANNEL

SUBBLOCK_BEAM_SPLITTERS

SUBBLOCK_BEAM_SPLITTER

SUBBLOCK_DATA_CHANNELS

SUBBLOCK_DATA_CHANNEL

SUBBLOCK_TIMERS

SUBBLOCK_TIMER

SUBBLOCK_MARKERS

SUBBLOCK_MARKER

SUBBLOCK_END

RECORDING_ENTRY_NAME

RECORDING_ENTRY_DESCRIPTION

RECORDING_ENTRY_NOTES

RECORDING_ENTRY_OBJECTIVE

RECORDING_ENTRY_PROCESSING_SUMMARY

RECORDING_ENTRY_SPECIAL_SCAN_MODE

RECORDING_ENTRY_SCAN_TYPE

OLEDB_RECORDING_ENTRY_SCAN_MODE

RECORDING_ENTRY_NUMBER_OF_STACKS

RECORDING_ENTRY_LINES_PER_PLANE

RECORDING_ENTRY_SAMPLES_PER_LINE

RECORDING_ENTRY_PLANES_PER_VOLUME

RECORDING_ENTRY_IMAGES_WIDTH

RECORDING_ENTRY_IMAGES_HEIGHT