Package gov.nih.mipav.view.dialogs

Class JDialogIndependentComponents

  • All Implemented Interfaces:
    AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ListSelectionListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
    public class JDialogIndependentComponents
extends JDialogScriptableBase
implements AlgorithmInterface, javax.swing.event.ListSelectionListener
    Dialog to get user input, then call the algorithm.
    See Also:
    Serialized Form

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      void algorithmPerformed​(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented.
      protected void callAlgorithm()
      Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
      private boolean checkImage​(ModelImage testImage)
      Checks the color and dimensionality of the new image vs. the original source image.
      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      private javax.swing.filechooser.FileFilter getFileFilter​(javax.swing.JFileChooser chooser, int index)
      A private helper function to get the current used FileFilter from JFileChooser.
      ModelImage[] getResultImage()
      Accessor that returns the image.
      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.
      private ModelImage open()
      Open an image based on the suffix of the file.
      void seta1​(double a1)
      Accessor that sets parameter a1 for tanh function
      void setEndTol​(double scale)
      Accessor that sets the end tol.
      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      void setICAlgorithm​(int icAlgorithm)
      Accessor that sets the icAlgorithm type (SYMMETRIC_ORTHOGONALIZATION, DEFLATIONARY_ORTHOGONALIZATION, or MAXIMUM_LIKELIHOOD_ESTIMATION).
      void setICNumber​(int icNumber)
      Accessor that sets the number of independent components.
      void setMaxIter​(int max)
      Accessor that sets the max iterations.
      void setNonlinearFunction​(int nonlinearFunction)
      Accessor that sets the nonlinear function type(tanh(a1*y), y*exp(-y*y/2), or y*y*y)
      void setSourceImage​(ModelImage[] images)
      Accessor that sets the array of source images.
      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      protected void storeParamsFromGUI()
      Record the parameters just used to run this algorithm in a script.
      void valueChanged​(javax.swing.event.ListSelectionEvent evt)
      Sets the remove index based on the selected index in the list.

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • changeRemoveIndex

        private boolean changeRemoveIndex
        DOCUMENT ME!

      • chooserButton

        private javax.swing.JButton chooserButton
        DOCUMENT ME!

      • destExtents

        private int[] destExtents
        DOCUMENT ME!

      • endTol

        private double endTol
        DOCUMENT ME!

      • deflationaryOrthogonalization

        private javax.swing.JRadioButton deflationaryOrthogonalization
        DOCUMENT ME!

      • maximumLikelihoodEstimation

        private javax.swing.JRadioButton maximumLikelihoodEstimation
        DOCUMENT ME!

      • symmetricOrthogonalization

        private javax.swing.JRadioButton symmetricOrthogonalization
        DOCUMENT ME!

      • imageList

        private javax.swing.JList imageList
        DOCUMENT ME!

      • imagePanel

        private javax.swing.JPanel imagePanel
        DOCUMENT ME!

      • nonlinearFunctionGroup

        private javax.swing.ButtonGroup nonlinearFunctionGroup
        DOCUMENT ME!

      • nonlinearFunctionPanel

        private javax.swing.JPanel nonlinearFunctionPanel
        DOCUMENT ME!

      • nonlinearFunction

        private int nonlinearFunction

      • tanhButton

        private javax.swing.JRadioButton tanhButton

      • labela1

        private javax.swing.JLabel labela1

      • texta1

        private javax.swing.JTextField texta1

      • a1

        private double a1

      • expButton

        private javax.swing.JRadioButton expButton

      • cubicButton

        private javax.swing.JRadioButton cubicButton

      • labelEndTol

        private javax.swing.JLabel labelEndTol
        DOCUMENT ME!

      • labelMaxIter

        private javax.swing.JLabel labelMaxIter
        DOCUMENT ME!

      • labelICNumber

        private javax.swing.JLabel labelICNumber
        DOCUMENT ME!

      • maxIter

        private int maxIter
        DOCUMENT ME!

      • model

        private javax.swing.DefaultListModel model
        DOCUMENT ME!

      • icNumber

        private int icNumber
        Number of independent components

      • paramPanel

        private javax.swing.JPanel paramPanel
        DOCUMENT ME!

      • removeButton

        private javax.swing.JButton removeButton
        DOCUMENT ME!

      • removeIndex

        private int removeIndex
        DOCUMENT ME!

      • resultImage

        private ModelImage[] resultImage
        DOCUMENT ME!

      • icAlgorithm

        private int icAlgorithm
        DOCUMENT ME!

      • icAlgorithmGroup

        private javax.swing.ButtonGroup icAlgorithmGroup
        DOCUMENT ME!

      • icAlgorithmPanel

        private javax.swing.JPanel icAlgorithmPanel
        DOCUMENT ME!

      • srcImage

        private ModelImage[] srcImage
        DOCUMENT ME!

      • srcNumber

        private int srcNumber
        DOCUMENT ME!

      • tempImage

        private ModelImage[] tempImage
        DOCUMENT ME!

      • textEndTol

        private javax.swing.JTextField textEndTol
        DOCUMENT ME!

      • textMaxIter

        private javax.swing.JTextField textMaxIter
        DOCUMENT ME!

      • textICNumber

        private javax.swing.JTextField textICNumber
        DOCUMENT ME!

    • Constructor Detail

      • JDialogIndependentComponents

        public JDialogIndependentComponents()
        Empty constructor needed for dynamic instantiation (used during scripting).

      • JDialogIndependentComponents

        public JDialogIndependentComponents​(java.awt.Frame theParentFrame,
                                    ModelImage im)
        Creates a new JDialogIndependentComponents object.
        Parameters:
        theParentFrame - parent frame
        im - source image

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Closes dialog box when the OK button is pressed and calls the algorithm.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
        Parameters:
        event - Event that triggers function.

      • algorithmPerformed

        public void algorithmPerformed​(AlgorithmBase algorithm)
        This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
        Specified by:
        algorithmPerformed in interface AlgorithmInterface
        Parameters:
        algorithm - Algorithm that caused the event.

      • getResultImage

        public ModelImage[] getResultImage()
        Accessor that returns the image.
        Returns:
        The result image.

      • setEndTol

        public void setEndTol​(double scale)
        Accessor that sets the end tol.
        Parameters:
        scale - Value to set end tol to.

      • setMaxIter

        public void setMaxIter​(int max)
        Accessor that sets the max iterations.
        Parameters:
        max - The max iterations

      • setICNumber

        public void setICNumber​(int icNumber)
        Accessor that sets the number of independent components.
        Parameters:
        classes - The number of independent components.

      • setICAlgorithm

        public void setICAlgorithm​(int icAlgorithm)
        Accessor that sets the icAlgorithm type (SYMMETRIC_ORTHOGONALIZATION, DEFLATIONARY_ORTHOGONALIZATION, or MAXIMUM_LIKELIHOOD_ESTIMATION).
        Parameters:
        icAlgorithm - The independent component algorithm.

      • setNonlinearFunction

        public void setNonlinearFunction​(int nonlinearFunction)
        Accessor that sets the nonlinear function type(tanh(a1*y), y*exp(-y*y/2), or y*y*y)
        Parameters:
        nonlinearFunction -

      • seta1

        public void seta1​(double a1)
        Accessor that sets parameter a1 for tanh function
        Parameters:
        a1 -

      • setSourceImage

        public void setSourceImage​(ModelImage[] images)
        Accessor that sets the array of source images.
        Parameters:
        images - new source images.

      • valueChanged

        public void valueChanged​(javax.swing.event.ListSelectionEvent evt)
        Sets the remove index based on the selected index in the list.
        Specified by:
        valueChanged in interface javax.swing.event.ListSelectionListener
        Parameters:
        evt - Event that caused this method to fire.

      • callAlgorithm

        protected void callAlgorithm()
        Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
        Specified by:
        callAlgorithm in class JDialogScriptableBase

      • doPostAlgorithmActions

        protected void doPostAlgorithmActions()
        Store the result image in the script runner's image table now that the action execution is finished.
        Overrides:
        doPostAlgorithmActions in class JDialogScriptableBase

      • setGUIFromParams

        protected void setGUIFromParams()
        Set the dialog GUI using the script parameters while running this algorithm as part of a script.
        Specified by:
        setGUIFromParams in class JDialogScriptableBase

      • checkImage

        private boolean checkImage​(ModelImage testImage)
        Checks the color and dimensionality of the new image vs. the original source image. All new images should have the same color modality as the source and be of the same dimensions.
        Parameters:
        testImage - DOCUMENT ME!
        Returns:
        Flag indicating if the image checks out.

      • getFileFilter

        private javax.swing.filechooser.FileFilter getFileFilter​(javax.swing.JFileChooser chooser,
                                                         int index)
        A private helper function to get the current used FileFilter from JFileChooser.
        Parameters:
        chooser - DOCUMENT ME!
        index - the index of the choosable file filters.
        Returns:
        the current used file filter.

      • init

        private void init()
        Sets up the GUI (panels, buttons, etc) and displays it on the screen.

      • open

        private ModelImage open()
        Open an image based on the suffix of the file.
        Returns:
        The image.

      • setVariables

        private boolean setVariables()
        Use the GUI results to set up the variables needed to run the algorithm.
        Returns:
        true if parameters set successfully, false otherwise.