Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmReplaceBlankSlicesWithAverages

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceBlankSlicesWithAverages

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmReplaceBlankSlicesWithAverages
extends AlgorithmBase

Version:

1.0 If all the values in a slice are the same, the slice is marked as a blank slice. The number of consecutive blank slices is counted. If the consecutive blank slices are at the beginning of the image, they are all replaced by the first nonblank slice. If th consecutive blank slices are at the end of the image, the are all replaced by the last nonblank slice. Otherwise, the consecutive blank slices are replaced by different weightings of the surrounding nonblank slices. For 1 consecutive blank slice simply an average of the 2 surrounding slices. For 2 consecutive blank slices the first blank slice is 2/3 * bottomNonBlank + 1/3 * topNonBlank and the second blank slice is 1/3 * bottomNonBlank + 2/3 * topNonBlank.

Author:

William Gandler

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmReplaceBlankSlicesWithAverages(ModelImage srcImage)	Creates a new AlgorithmReplaceSlice object.

Method Summary

Modifier and Type	Method	Description
void	runAlgorithm()	Actually runs the algorithm.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AlgorithmReplaceBlankSlicesWithAverages

public AlgorithmReplaceBlankSlicesWithAverages(ModelImage srcImage)

Creates a new AlgorithmReplaceSlice object.

Parameters:

srcImage - DOCUMENT ME!

Method Detail

runAlgorithm

public void runAlgorithm()

Actually runs the algorithm.

Specified by:

runAlgorithm in class AlgorithmBase