Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmRemoveTSlices

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmRemoveTSlices
extends AlgorithmBase

Algorithm to run the remove T slices. Algorithm verifies the t-th slice should be in included in the destination image, as defined in the list, remove. It copies the slice from the src img to a buffer, and then from the buffer into the destination img. Copies the src file info to a buffer and makes it conform to the new img, then copies it into the dest file.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private int	oldTdim	Original T dimension of the image.
private boolean[]	remove	List of slices to remove from source image.
private int	volume	Area of a slice (Xdim * Ydim * Zdim).
private int	Xdim	X dimension of the image.
private int	Ydim	Y dimension of the image.
private int	Zdim	Z dimension of the image.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmRemoveTSlices(ModelImage srcImage, ModelImage destImage, boolean[] removeSlices)	import source and destination images into the class.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares this class for destruction.
void	runAlgorithm()	Where algorithm calculates the final output.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

oldTdim

private int oldTdim

Original T dimension of the image.

remove

private boolean[] remove

List of slices to remove from source image.

volume

private int volume

Area of a slice (Xdim * Ydim * Zdim).

Xdim

private int Xdim

X dimension of the image.

Ydim

private int Ydim

Y dimension of the image.

Zdim

private int Zdim

Z dimension of the image.

Constructor Details

AlgorithmRemoveTSlices

public AlgorithmRemoveTSlices(ModelImage srcImage,
 ModelImage destImage,
 boolean[] removeSlices)

import source and destination images into the class.

Parameters:

srcImage - source image (image to clip from)

destImage - destination image (image to paste to)

removeSlices - list of boolean indicating which slices in source should *not* be in the destination

Method Details

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Where algorithm calculates the final output.

Specified by:

runAlgorithm in class AlgorithmBase