AlgorithmRemoveTSlices (MIPAV API Documentation)

java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmRemoveTSlices
extends AlgorithmBase
```
Algorithm to run the remove T slices. Algorithm verifies the t-th slice should be in included in the destination image, as defined in the list, remove. It copies the slice from the src img to a buffer, and then from the buffer into the destination img. Copies the src file info to a buffer and makes it conform to the new img, then copies it into the dest file.

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`oldTdim`	Original T dimension of the image.
`private boolean[]`	`remove`	List of slices to remove from source image.
`private int`	`volume`	Area of a slice (Xdim * Ydim * Zdim).
`private int`	`Xdim`	X dimension of the image.
`private int`	`Ydim`	Y dimension of the image.
`private int`	`Zdim`	Z dimension of the image.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmRemoveTSlices(ModelImage srcImage, ModelImage destImage, boolean[] removeSlices)`	import source and destination images into the class.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for destruction.
`void`	`runAlgorithm()`	Where algorithm calculates the final output.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - oldTdim
```
private int oldTdim
```
    Original T dimension of the image.
  - remove
```
private boolean[] remove
```
    List of slices to remove from source image.
  - volume
```
private int volume
```
    Area of a slice (Xdim * Ydim * Zdim).
  - Xdim
```
private int Xdim
```
    X dimension of the image.
  - Ydim
```
private int Ydim
```
    Y dimension of the image.
  - Zdim
```
private int Zdim
```
    Z dimension of the image.
- Constructor Detail
  - AlgorithmRemoveTSlices
```
public AlgorithmRemoveTSlices(ModelImage srcImage,
                              ModelImage destImage,
                              boolean[] removeSlices)
```
    import source and destination images into the class.
    
    Parameters:
    
    srcImage - source image (image to clip from)
    
    destImage - destination image (image to paste to)
    
    removeSlices - list of boolean indicating which slices in source should *not* be in the destination
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - runAlgorithm
```
public void runAlgorithm()
```
    Where algorithm calculates the final output.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase