Package gov.nih.mipav.view.dialogs

Class JDialogMeanShiftClustering

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogScriptableBase

gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class JDialogMeanShiftClustering
extends JDialogScriptableBase
implements AlgorithmInterface

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private AlgorithmMeanShiftClustering	alg	handle to algorithm
private JButton	buttonImage
private JButton	buttonPointsFile
private ButtonGroup	chooseGroup
private int	choosePoints
private String	data_file_name
private float	epsilon
private JLabel	epsilonLabel
private JTextField	epsilonText
static final int	EVERY_POINT
private JRadioButton	everyButton
private boolean	FAMS_DO_SPEEDUP
private File	filePoints
private boolean	findOptimalKL
private JCheckBox	fixedCheckBox
private boolean	fixedWidth
private boolean	havePoints
private ModelImage	image	source image.
private JComboBox	imageList
private String	input_directory
private int	jump
private JRadioButton	jumpButton
private JLabel	jumpLabel
private JTextField	jumpText
private int	K
private int	k_neigh
private int	Kjump
private JLabel	KjumpLabel
private JTextField	KjumpText
private int	Kmin
private JLabel	KminLabel
private JTextField	KminText
private JTextField	KText
private int	L
private JTextField	LText
private ModelImage	modesImage
private int	nDims
private JTextField	neighborText
private int	nPoints
private JLabel	optimal1Label
private JLabel	optimal2Label
private JCheckBox	optimalCheckBox
private double	percent
private JRadioButton	percentButton
private JLabel	percentLabel
private JTextField	percentText
private ModelImage	prunedModesImage
private float[]	pttemp
private ModelImage	resultImage	result image
static final int	SELECT_ON_JUMP
static final int	SELECT_PERCENT
private JCheckBox	speedupCheckBox
private JTextField	textImage
private JTextField	textPointsFile
private float	width
private JLabel	widthLabel
private JTextField	widthText

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogMeanShiftClustering()

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	action performed
void	algorithmPerformed(AlgorithmBase algorithm)	algorithm performed
protected void	callAlgorithm()	call algorithm
ModelImage	getResultImage()	get result image
private void	init()	init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
private void	loadImage()
private String[]	retrieveValues(String inString)
protected void	setGUIFromParams()	set GUI from params
private boolean	setVariables()
protected void	storeParamsFromGUI()	store params from gui
void	windowClosing(WindowEvent event)	window closing

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

EVERY_POINT

public static final int EVERY_POINT

See Also:

• Constant Field Values

SELECT_ON_JUMP

public static final int SELECT_ON_JUMP

See Also:

• Constant Field Values

SELECT_PERCENT

public static final int SELECT_PERCENT

See Also:

• Constant Field Values

alg

private AlgorithmMeanShiftClustering alg

handle to algorithm

image

private ModelImage image

source image.

resultImage

private ModelImage resultImage

result image

K

private int K

L

private int L

k_neigh

private int k_neigh

data_file_name

private String data_file_name

input_directory

private String input_directory

choosePoints

private int choosePoints

jump

private int jump

percent

private double percent

fixedWidth

private boolean fixedWidth

width

private float width

findOptimalKL

private boolean findOptimalKL

epsilon

private float epsilon

Kmin

private int Kmin

Kjump

private int Kjump

FAMS_DO_SPEEDUP

private boolean FAMS_DO_SPEEDUP

nPoints

private int nPoints

nDims

private int nDims

pttemp

private float[] pttemp

modesImage

private ModelImage modesImage

prunedModesImage

private ModelImage prunedModesImage

textImage

private JTextField textImage

buttonImage

private JButton buttonImage

imageList

private JComboBox imageList

textPointsFile

private JTextField textPointsFile

buttonPointsFile

private JButton buttonPointsFile

filePoints

private File filePoints

havePoints

private boolean havePoints

KText

private JTextField KText

LText

private JTextField LText

optimalCheckBox

private JCheckBox optimalCheckBox

optimal1Label

private JLabel optimal1Label

optimal2Label

private JLabel optimal2Label

epsilonLabel

private JLabel epsilonLabel

epsilonText

private JTextField epsilonText

KminLabel

private JLabel KminLabel

KminText

private JTextField KminText

KjumpLabel

private JLabel KjumpLabel

KjumpText

private JTextField KjumpText

neighborText

private JTextField neighborText

chooseGroup

private ButtonGroup chooseGroup

everyButton

private JRadioButton everyButton

jumpButton

private JRadioButton jumpButton

jumpLabel

private JLabel jumpLabel

jumpText

private JTextField jumpText

percentButton

private JRadioButton percentButton

percentLabel

private JLabel percentLabel

percentText

private JTextField percentText

fixedCheckBox

private JCheckBox fixedCheckBox

widthLabel

private JLabel widthLabel

widthText

private JTextField widthText

speedupCheckBox

private JCheckBox speedupCheckBox

Constructor Details

JDialogMeanShiftClustering

public JDialogMeanShiftClustering()

Method Details

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

algorithm performed

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - the algorithm which has just completed

init

private void init()

init Sets up the GUI (panels, buttons, etc) and displays it on the screen.

loadImage

private void loadImage()

actionPerformed

public void actionPerformed(ActionEvent event)

action performed

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class JDialogBase

retrieveValues

private String[] retrieveValues(String inString)

setVariables

private boolean setVariables()

callAlgorithm

protected void callAlgorithm()

call algorithm

Specified by:

callAlgorithm in class JDialogScriptableBase

getResultImage

public ModelImage getResultImage()

get result image

Returns:

The result image.

windowClosing

public void windowClosing(WindowEvent event)

window closing

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class JDialogBase

Parameters:

event - WindowEvent

setGUIFromParams

protected void setGUIFromParams()

set GUI from params

Specified by:

setGUIFromParams in class JDialogScriptableBase

storeParamsFromGUI

protected void storeParamsFromGUI()
                           throws ParserException

store params from gui

Specified by:

storeParamsFromGUI in class JDialogScriptableBase

Throws:

ParserException - If there is a problem creating/recording the new parameters.