java.lang.Object
- WildMagic.LibApplications.OpenGLApplication.Application
- - WildMagic.LibApplications.OpenGLApplication.JavaApplication
  - - WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    - - gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
      - gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender

All Implemented Interfaces:

com.jogamp.opengl.GLEventListener, SpaceNavigatorListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.io.Serializable, java.util.EventListener
```
public class CorticalAnalysisRender
extends GPURenderBase
implements com.jogamp.opengl.GLEventListener
```
Cortical analysis applet and viewer. This class contains the static 'main' method to launch the application. This class is an Applet which means that it can be embedded in a browser or it can be attached to a MainFrame when executed as an application.

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`private int[]`	`m_aiTriIndex`	Point indices of the puncture triangle.
`private WildMagic.LibFoundation.Mathematics.ColorRGB[]`	`m_akPickColors`	Colors for the picked points:.
`private WildMagic.LibFoundation.Mathematics.ColorRGBA[]`	`m_akTriColors`	puncture triangle color
`private boolean`	`m_bCurvatureColors`	Flag set to indicate whether curvature colors are rendered on the mesh surface.
`private boolean`	`m_bDisplayLines`	Toggle latitude/longitude display on/off.
`private boolean`	`m_bFirst`	First time the scene is rendered.
`private boolean`	`m_bInflationInitialized`	Flag set once inflation processing has been initialized.
`private boolean`	`m_bPickCorrespondenceEnabled`	Turned on when picking with the mouse is enabled:.
`private boolean`	`m_bPickPunctureEnabled`	Enable/disable picking puncture triangle
`private int`	`m_iNumLat`
`private int`	`m_iNumLon`
`private int`	`m_iNumPicked`	number of picked points displayed.
`private int`	`m_iRunningNumPicked`	Cycle through the number of correspondence points.
`private MjCorticalMesh_WM`	`m_kCortical`	Cortical mesh to be used in rendering scene.
`private VolumeSurface`	`m_kCylinder`	Cylinder renderer
`private VolumeNode`	`m_kCylinderLines`	Cylinder longitude/latitude lines.
`private VolumeNode`	`m_kCylinderPoints`	Scene-graph node for displaying correspondence points on the cylinder.
`private ModelLUT`	`m_kLUTConvexity`	LUT for the triangle mesh convexity colors.
`private ModelLUT`	`m_kLUTCurvature`	local reference to ModelLUT.
`private WildMagic.LibGraphics.SceneGraph.Node`	`m_kMeshLines`	TriMesh longitude/latitude lines.
`private WildMagic.LibGraphics.SceneGraph.Node`	`m_kMeshPoints`	Scene-graph node for displaying correspondence points on the TriMesh surface.
`private JPanelBrainSurfaceFlattener_WM`	`m_kPanel`	BrainSurfaceFlattener User-Interface panel
`protected VolumeTriPlanarInterface`	`m_kParent`	Parent user-interface and display frame.
`private VolumeSurface`	`m_kSphere`	Sphere renderer.
`private VolumeNode`	`m_kSphereLines`	Sphere longitude/latitude lines.
`private VolumeNode`	`m_kSpherePoints`	Scene-graph node for displaying correspondence points on the sphere.
`private int`	`MAX_POINTS`	Maximum number of correspondence points.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
hyperstack, hyperstackColormap, isSpaceNavCodeRunning, m_akLights, m_bDispose, m_bDoClip, m_bExtract, m_bFirstDrag, m_bInit, m_bModified, m_bMouseDrag, m_bPickPending, m_bShared, m_bSnapshot, m_bStandAlone, m_bSurfaceMaskUpdate, m_bSurfaceUpdate, m_bTestFrameRate, m_bVisible, m_fMax, m_fX, m_fY, m_fZ, m_iCaptureFPS, m_iScreenCaptureCounter, m_iXPick, m_iYPick, m_kAnimator, m_kCuller, m_kDeleteList, m_kDisplayList, m_kPicker, m_kSceneToWorld, m_kTranslate, m_kVolumeImageA, m_kVolumeImageA_New, m_kVolumeImageA_Old, m_kVolumeImageB, m_kVolumeImageB_New, m_kVolumeImageB_Old, m_kWinLevel, m_kXRotate, m_kYRotate, m_kZRotate, m_spkCull, m_spkScene, nearPlane, updateBoundingCube

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors
Constructor	Description
`CorticalAnalysisRender(com.jogamp.opengl.awt.GLCanvas kCanvas, VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`
`CorticalAnalysisRender(VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`	Construct the BrainSurfaceFlattener renderer.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`VolumeSurface`	`addSurface(WildMagic.LibGraphics.SceneGraph.TriMesh kSurfaces)`	Add a surface to the display list.
`void`	`calculateConformal()`	Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
`private float`	`closestPlanePointIndex(WildMagic.LibGraphics.Collision.PickRecord kPickPoint)`	For the plane, all vertices have z-value set to zero.
`private void`	`CreateScene()`	Called by the init() function.
`void`	`display(com.jogamp.opengl.GLAutoDrawable arg0)`
`void`	`displayConvexityColors()`	toggle between display of mean curvature-based colors and average convexity-based colors.
`void`	`displayCurvatureColors()`	toggle between display of mean curvature-based colors and average convexity-based colors.
`void`	`displayPlane()`	Switch to displaying the plane:
`void`	`displaySphere()`	Switch to displaying the sphere:
`void`	`dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)`	memory cleanup.
`void`	`drawPicked(int iV0, int iV1, int iV2)`	Draw the user-selected point, either as a sphere on the triangle mesh, or as a black triangle, depending on which picking is enabled:
`private void`	`drawPoint(int iIndex)`	Draw the user-selected point as a sphere on the triangle mesh:
`private void`	`drawTriangle(int iV0, int iV1, int iV2)`	Draw the user-selected triangle as a black triangle, save the original color so it can be restored:
`javax.swing.JPanel`	`getMainPanel()`	Return the main panel display.
`float`	`getMaxCurvature()`	return the max mean curvature:
`WildMagic.LibGraphics.SceneGraph.Node`	`getMeshLines()`
`float`	`getMinCurvature()`	return the min mean curvature:
`JPanelBrainSurfaceFlattener_WM`	`getPanel()`
`void`	`inflation()`	perform inflation step and then render shapes using the average convexity colors.
`void`	`init(com.jogamp.opengl.GLAutoDrawable arg0)`
`boolean`	`isCorrespondencePickEnabled()`	Return whether or not picking correspondence points is enabled:
`boolean`	`isPuncturePickEnabled()`	Return whether or not picking the puncture triangle is enabled:
`void`	`mouseDragged(java.awt.event.MouseEvent e)`
`void`	`mousePressed(java.awt.event.MouseEvent e)`
`protected void`	`Pick()`	Picking.
`void`	`removePoints()`	Remove all points drawn on the mesh, sphere, and plane:
`private void`	`Render()`	Render the scene.
`void`	`resizePanel(int panelWidth, int frameHeight)`	Resizing the control panel with ViewJFrameVolumeView's frame width and height.
`private void`	`restoreTriColor()`	Resets the previously picked triangle to it's original color:
`private void`	`setColorsLUT()`	Update the colormap based on the LUT:
`void`	`setLUTConvexity(ModelLUT kLUT)`	Update the colormap based on the LUT:
`void`	`setLUTCurvature(ModelLUT kLUT)`	Update the colormap based on the LUT:
`boolean`	`setup(WildMagic.LibGraphics.SceneGraph.TriMesh kMesh, WildMagic.LibFoundation.Mathematics.Vector3f kCenter)`	Perform all initialization prior to executing.
`void`	`setupLatLon(int iNumLat, int iNumLon)`	Called when the mesh is created, or when the number of latitude or longitude lines is changed by the user.
`void`	`toggleLatLonLines(boolean bDisplay)`	Toggle between displaying the latitude and longitude lines:
`void`	`togglePickCorrespondence()`	Enables picking with the mouse and drawing the curve on the mesh.
`void`	`togglePickPuncture()`	Enables picking with the mouse and drawing the curve on the mesh.
`void`	`updateLighting(WildMagic.LibGraphics.Rendering.Light[] akGLights)`	Called from JPanelLight.

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
AddNode, checkIfSpaceNavNeedsCalibration, dispose, drawText, fineMovement, GetCanvas, getCounter, getDisplayList, getImage, GetLights, getNearPlane, GetNode, getNormalizedXDim, getNormalizedYDim, getNormalizedZDim, getRotationCutoffValue, getRotationScaleFactor, GetSceneRotation, getSceneToWorldMatrix, getTranslate, getTranslationCutoffValue, getTranslationScaleFactor, getVolumeImage, getVolumeImageB, invertRX, invertRY, invertRZ, invertTX, invertTY, invertTZ, isUseMouseRotationCutoffs, isUseMouseTranslationCutoffs, isVisible, keyPressed, Move, normalMovement, pauseAnimator, processSpaceNavEvent, processSpaceNavEvent, record, reInitialize, RemoveNode, RenderFrameRate, resetAxis, resetAxisX, resetAxisXInv, resetAxisY, reshape, saveAVIMovie, saveQuickTimeMovie, setCameraNearPlane, setDefaultLighting, setOrthographicProjection, setPerspectiveProjection, setRotationCutoffValue, setRotationScaleFactor, SetSceneRotation, setTranslationCutoffValue, setTranslationScaleFactor, setUseMouseRotationCutoffs, setUseMouseTranslationCutoffs, setVisible, startAnimator, updateImageFromRotation, UpdateSceneRotation, writeImage

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyReleased, keyTyped, LookDown, LookUp, MeasureTime, mouseClicked, mouseEntered, mouseExited, mouseMoved, mouseReleased, mouseWheelMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application
reloadShaders, TestStreaming

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.jogamp.opengl.GLEventListener
reshape

Methods inherited from interface java.awt.event.KeyListener
keyReleased, keyTyped

Methods inherited from interface java.awt.event.MouseListener
mouseClicked, mouseEntered, mouseExited, mouseReleased

Methods inherited from interface java.awt.event.MouseMotionListener
mouseMoved

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - m_kParent
```
protected VolumeTriPlanarInterface m_kParent
```
    Parent user-interface and display frame.
  - m_aiTriIndex
```
private int[] m_aiTriIndex
```
    Point indices of the puncture triangle.
  - m_akTriColors
```
private WildMagic.LibFoundation.Mathematics.ColorRGBA[] m_akTriColors
```
    puncture triangle color
  - m_akPickColors
```
private WildMagic.LibFoundation.Mathematics.ColorRGB[] m_akPickColors
```
    Colors for the picked points:.
  - m_bCurvatureColors
```
private boolean m_bCurvatureColors
```
    Flag set to indicate whether curvature colors are rendered on the mesh surface. If not, then average convexity colors are rendered.
  - m_bInflationInitialized
```
private boolean m_bInflationInitialized
```
    Flag set once inflation processing has been initialized.
  - m_bPickCorrespondenceEnabled
```
private boolean m_bPickCorrespondenceEnabled
```
    Turned on when picking with the mouse is enabled:.
  - m_bPickPunctureEnabled
```
private boolean m_bPickPunctureEnabled
```
    Enable/disable picking puncture triangle
  - m_iNumPicked
```
private int m_iNumPicked
```
    number of picked points displayed.
  - m_iRunningNumPicked
```
private int m_iRunningNumPicked
```
    Cycle through the number of correspondence points.
  - m_kCortical
```
private MjCorticalMesh_WM m_kCortical
```
    Cortical mesh to be used in rendering scene.
  - m_kLUTConvexity
```
private ModelLUT m_kLUTConvexity
```
    LUT for the triangle mesh convexity colors.
  - m_kLUTCurvature
```
private ModelLUT m_kLUTCurvature
```
    local reference to ModelLUT.
  - m_kPanel
```
private JPanelBrainSurfaceFlattener_WM m_kPanel
```
    BrainSurfaceFlattener User-Interface panel
  - MAX_POINTS
```
private int MAX_POINTS
```
    Maximum number of correspondence points.
  - m_bFirst
```
private boolean m_bFirst
```
    First time the scene is rendered.
  - m_kSphere
```
private VolumeSurface m_kSphere
```
    Sphere renderer.
  - m_kCylinder
```
private VolumeSurface m_kCylinder
```
    Cylinder renderer
  - m_kSphereLines
```
private VolumeNode m_kSphereLines
```
    Sphere longitude/latitude lines.
  - m_kCylinderLines
```
private VolumeNode m_kCylinderLines
```
    Cylinder longitude/latitude lines.
  - m_kMeshLines
```
private WildMagic.LibGraphics.SceneGraph.Node m_kMeshLines
```
    TriMesh longitude/latitude lines.
  - m_bDisplayLines
```
private boolean m_bDisplayLines
```
    Toggle latitude/longitude display on/off.
  - m_kSpherePoints
```
private VolumeNode m_kSpherePoints
```
    Scene-graph node for displaying correspondence points on the sphere.
  - m_kCylinderPoints
```
private VolumeNode m_kCylinderPoints
```
    Scene-graph node for displaying correspondence points on the cylinder.
  - m_kMeshPoints
```
private WildMagic.LibGraphics.SceneGraph.Node m_kMeshPoints
```
    Scene-graph node for displaying correspondence points on the TriMesh surface.
  - m_iNumLat
```
private int m_iNumLat
```
  - m_iNumLon
```
private int m_iNumLon
```
- Constructor Detail
  - CorticalAnalysisRender
```
public CorticalAnalysisRender(VolumeTriPlanarInterface kParent,
                              VolumeImage kVolumeImageA,
                              VolumeImage kVolumeImageB)
```
    Construct the BrainSurfaceFlattener renderer.
    
    Parameters:
    
    kParent - parent user-interface and frame.
    
    kAnimator - animator used to display the canvas.
    
    kVolumeImageA - volume data and textures for ModelImage A.
    
    kVolumeImageB - volume data and textures for ModelImage B.
  - CorticalAnalysisRender
```
public CorticalAnalysisRender(com.jogamp.opengl.awt.GLCanvas kCanvas,
                              VolumeTriPlanarInterface kParent,
                              VolumeImage kVolumeImageA,
                              VolumeImage kVolumeImageB)
```
- Method Detail
  - addSurface
```
public VolumeSurface addSurface(WildMagic.LibGraphics.SceneGraph.TriMesh kSurfaces)
```
    Add a surface to the display list.
    
    Parameters:
    
    kSurfaces -
    
    Returns:
    
    VolumeSurface representation.
  - calculateConformal
```
public void calculateConformal()
```
    Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
  - display
```
public void display(com.jogamp.opengl.GLAutoDrawable arg0)
```
    Specified by:
    
    display in interface com.jogamp.opengl.GLEventListener
  - displayConvexityColors
```
public void displayConvexityColors()
```
    toggle between display of mean curvature-based colors and average convexity-based colors.
  - displayCurvatureColors
```
public void displayCurvatureColors()
```
    toggle between display of mean curvature-based colors and average convexity-based colors.
  - displayPlane
```
public void displayPlane()
```
    Switch to displaying the plane:
  - displaySphere
```
public void displaySphere()
```
    Switch to displaying the sphere:
  - dispose
```
public void dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)
```
    Description copied from class: GPURenderBase
    
    memory cleanup.
    
    Specified by:
    
    dispose in interface com.jogamp.opengl.GLEventListener
    
    Overrides:
    
    dispose in class GPURenderBase
  - drawPicked
```
public void drawPicked(int iV0,
                       int iV1,
                       int iV2)
```
    Draw the user-selected point, either as a sphere on the triangle mesh, or as a black triangle, depending on which picking is enabled:
    
    Parameters:
    
    iV0 - index 0 of the picked triangle.
    
    iV1 - index 1 of the picked triangle.
    
    iV2 - index 2 of the picked triangle.
  - getMainPanel
```
public javax.swing.JPanel getMainPanel()
```
    Return the main panel display.
    
    Returns:
    
    main panel display.
  - getMaxCurvature
```
public float getMaxCurvature()
```
    return the max mean curvature:
    
    Returns:
    
    max mean curvature.
  - getMeshLines
```
public WildMagic.LibGraphics.SceneGraph.Node getMeshLines()
```
    Returns:
    
    scene-graph Node containing the TriMesh latitude/longitude lines.
  - getMinCurvature
```
public float getMinCurvature()
```
    return the min mean curvature:
    
    Returns:
    
    min mean curvature.
  - getPanel
```
public JPanelBrainSurfaceFlattener_WM getPanel()
```
  - inflation
```
public void inflation()
```
    perform inflation step and then render shapes using the average convexity colors.
  - init
```
public void init(com.jogamp.opengl.GLAutoDrawable arg0)
```
    Specified by:
    
    init in interface com.jogamp.opengl.GLEventListener
  - isCorrespondencePickEnabled
```
public boolean isCorrespondencePickEnabled()
```
    Return whether or not picking correspondence points is enabled:
    
    Returns:
    
    true when picking correspondence points in enabled, false otherwise.
  - isPuncturePickEnabled
```
public boolean isPuncturePickEnabled()
```
    Return whether or not picking the puncture triangle is enabled:
    
    Returns:
    
    true when picking the puncture triangle is enabled, false otherwise.
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseDragged in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Overrides:
    
    mousePressed in class GPURenderBase
  - removePoints
```
public void removePoints()
```
    Remove all points drawn on the mesh, sphere, and plane:
  - resizePanel
```
public void resizePanel(int panelWidth,
                        int frameHeight)
```
    Resizing the control panel with ViewJFrameVolumeView's frame width and height.
    
    Parameters:
    
    panelWidth - int width
    
    frameHeight - int height
  - setLUTConvexity
```
public void setLUTConvexity(ModelLUT kLUT)
```
    Update the colormap based on the LUT:
    
    Parameters:
    
    kLUT - new LUT.
  - setLUTCurvature
```
public void setLUTCurvature(ModelLUT kLUT)
```
    Update the colormap based on the LUT:
    
    Parameters:
    
    kLUT - new LUT.
  - setup
```
public boolean setup(WildMagic.LibGraphics.SceneGraph.TriMesh kMesh,
                     WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
```
    Perform all initialization prior to executing. Loads the sample mesh surface and sets up the rendering of the scene.
    
    Parameters:
    
    kMesh - , TriMesh.
  - setupLatLon
```
public void setupLatLon(int iNumLat,
                        int iNumLon)
```
    Called when the mesh is created, or when the number of latitude or longitude lines is changed by the user. When the user changes the number of latitude or longitude lines, the meshes are removed from the scene and recreated.
    
    Parameters:
    
    iNumLat - number of latitude lines to display.
    
    iNumLon - number of longitude lines to display.
  - toggleLatLonLines
```
public void toggleLatLonLines(boolean bDisplay)
```
    Toggle between displaying the latitude and longitude lines:
    
    Parameters:
    
    bDisplay - display on/off.
  - togglePickCorrespondence
```
public void togglePickCorrespondence()
```
    Enables picking with the mouse and drawing the curve on the mesh.
  - togglePickPuncture
```
public void togglePickPuncture()
```
    Enables picking with the mouse and drawing the curve on the mesh.
  - updateLighting
```
public void updateLighting(WildMagic.LibGraphics.Rendering.Light[] akGLights)
```
    Called from JPanelLight. Updates the lighting parameters.
    
    Overrides:
    
    updateLighting in class GPURenderBase
    
    Parameters:
    
    akGLights - the set of GeneralLight objects.
  - closestPlanePointIndex
```
private float closestPlanePointIndex(WildMagic.LibGraphics.Collision.PickRecord kPickPoint)
```
    For the plane, all vertices have z-value set to zero. Because the mesh is closed, even for the plane, the edge triangles wrap around the back of the mesh, and are co-planar with the forward-facing triangles (the ones that display the data) -- when picking is done, the pickClosest sometimes returns the back-facing triangle. This function returns the correct, visible triangle for the plane:
    
    Parameters:
    
    kPickPoint - , the PickRecord containing information about the picked triangle.
    
    Returns:
    
    the minimum distance to the plane.
  - CreateScene
```
private void CreateScene()
```
    Called by the init() function. Creates and initialized the scene-graph.
  - drawPoint
```
private void drawPoint(int iIndex)
```
    Draw the user-selected point as a sphere on the triangle mesh:
    
    Parameters:
    
    iIndex - the index of the TriMesh vertex at which to draw the sphere.
  - drawTriangle
```
private void drawTriangle(int iV0,
                          int iV1,
                          int iV2)
```
    Draw the user-selected triangle as a black triangle, save the original color so it can be restored:
    
    Parameters:
    
    iV0 - triangle index 0.
    
    iV1 - triangle index 1.
    
    iV2 - triangle index 2.
  - Render
```
private void Render()
```
    Render the scene.
  - restoreTriColor
```
private void restoreTriColor()
```
    Resets the previously picked triangle to it's original color:
  - setColorsLUT
```
private void setColorsLUT()
```
    Update the colormap based on the LUT:
  - Pick
```
protected void Pick()
```
    Picking.

Class CorticalAnalysisRender

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

Methods inherited from class java.lang.Object

Methods inherited from interface com.jogamp.opengl.GLEventListener

Methods inherited from interface java.awt.event.KeyListener

Methods inherited from interface java.awt.event.MouseListener

Methods inherited from interface java.awt.event.MouseMotionListener

Field Detail

serialVersionUID

m_kParent

m_aiTriIndex

m_akTriColors

m_akPickColors

m_bCurvatureColors

m_bInflationInitialized

m_bPickCorrespondenceEnabled

m_bPickPunctureEnabled

m_iNumPicked

m_iRunningNumPicked

m_kCortical

m_kLUTConvexity

m_kLUTCurvature

m_kPanel

MAX_POINTS

m_bFirst

m_kSphere

m_kCylinder

m_kSphereLines

m_kCylinderLines

m_kMeshLines

m_bDisplayLines

m_kSpherePoints

m_kCylinderPoints

m_kMeshPoints

m_iNumLat

m_iNumLon

Constructor Detail

CorticalAnalysisRender

CorticalAnalysisRender

Method Detail

addSurface

calculateConformal

display

displayConvexityColors

displayCurvatureColors

displayPlane

displaySphere

dispose

drawPicked

getMainPanel

getMaxCurvature

getMeshLines

getMinCurvature

getPanel

inflation

init

isCorrespondencePickEnabled

isPuncturePickEnabled

mouseDragged

mousePressed

removePoints

resizePanel

setLUTConvexity

setLUTCurvature

setup

setupLatLon

toggleLatLonLines

togglePickCorrespondence

togglePickPuncture

updateLighting

closestPlanePointIndex