Package gov.nih.mipav.model.algorithms

Class CeresSolverNISTTest

java.lang.Object

gov.nih.mipav.model.algorithms.CeresSolver

gov.nih.mipav.model.algorithms.CeresSolverNISTTest

public class CeresSolverNISTTest
extends CeresSolver

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	CeresSolverNISTTest.Bennett5CostFunction
(package private) class	CeresSolverNISTTest.BoxBODCostFunction
(package private) class	CeresSolverNISTTest.Chiwrut1CostFunction
(package private) class	CeresSolverNISTTest.Chiwrut2CostFunction
(package private) class	CeresSolverNISTTest.DanwoodCostFunction
(package private) class	CeresSolverNISTTest.Eckerle4CostFunction
(package private) class	CeresSolverNISTTest.ENSOCostFunction
(package private) class	CeresSolverNISTTest.Gauss1CostFunction
(package private) class	CeresSolverNISTTest.Gauss2CostFunction
(package private) class	CeresSolverNISTTest.Gauss3CostFunction
(package private) class	CeresSolverNISTTest.Hahn1CostFunction
(package private) class	CeresSolverNISTTest.Kirby2CostFunction
(package private) class	CeresSolverNISTTest.Lanczos1CostFunction
(package private) class	CeresSolverNISTTest.Lanczos2CostFunction
(package private) class	CeresSolverNISTTest.Lanczos3CostFunction
(package private) class	CeresSolverNISTTest.MisralaCostFunction
(package private) class	CeresSolverNISTTest.MisralbCostFunction
(package private) class	CeresSolverNISTTest.MisralcCostFunction
(package private) class	CeresSolverNISTTest.MisraldCostFunction
(package private) class	CeresSolverNISTTest.NelsonCostFunction
(package private) class	CeresSolverNISTTest.Rat42CostFunction
(package private) class	CeresSolverNISTTest.Rat43CostFunction
(package private) class	CeresSolverNISTTest.Roszman1CostFunction
(package private) class	CeresSolverNISTTest.ThurberCostFunction

Nested classes/interfaces inherited from class gov.nih.mipav.model.algorithms.CeresSolver

CeresSolver.ArctanLoss, CeresSolver.ArmijoLineSearch, CeresSolver.AutoDiffCostFunction<CostFunctor>, CeresSolver.BadTestTerm, CeresSolver.BFGS, CeresSolver.Block, CeresSolver.BlockEvaluatePreparer, CeresSolver.BlockJacobianWriter, CeresSolver.BlockJacobiPreconditioner, CeresSolver.BlockRandomAccessDenseMatrix, CeresSolver.BlockRandomAccessDiagonalMatrix, CeresSolver.BlockRandomAccessMatrix, CeresSolver.BlockSparseMatrix, CeresSolver.BlockSparseMatrixRandomMatrixOptions, CeresSolver.CallbackReturnType, CeresSolver.CallStatistics, CeresSolver.CauchyLoss, CeresSolver.Cell, CeresSolver.CellInfo, CeresSolver.CellLessThan, CeresSolver.CgnrLinearOperator, CeresSolver.CgnrSolver, CeresSolver.Chunk, CeresSolver.ComposedLoss, CeresSolver.CompressedList, CeresSolver.CompressedRowBlockStructure, CeresSolver.CompressedRowJacobianWriter, CeresSolver.CompressedRowSparseMatrix, CeresSolver.ConjugateGradientsSolver, CeresSolver.Context, CeresSolver.CoordinateDescentMinimizer, CeresSolver.Corrector, CeresSolver.CostFunction, CeresSolver.CostFunctorExample, CeresSolver.CovarianceAlgorithmType, CeresSolver.CRSMatrix, CeresSolver.CurveFittingFunctorExample, CeresSolver.DenseJacobianWriter, CeresSolver.DenseLinearAlgebraLibraryType, CeresSolver.DenseNormalCholeskySolver, CeresSolver.DenseQRSolver, CeresSolver.DenseSchurComplementSolver, CeresSolver.DenseSparseMatrix, CeresSolver.DoglegStrategy, CeresSolver.DoglegType, CeresSolver.DumpFormatType, CeresSolver.DynamicCompressedRowJacobianFinalizer, CeresSolver.DynamicCompressedRowJacobianWriter, CeresSolver.DynamicCostFunction, CeresSolver.DynamicNumericDiffCostFunction<T>, CeresSolver.EasyCostFunction, CeresSolver.EasyFunctor, CeresSolver.EigenQuaternionParameterization, CeresSolver.EvaluateOptions, CeresSolver.EvaluateScratch, CeresSolver.EvaluationCallback, CeresSolver.Evaluator, CeresSolver.EvaluatorOptions, CeresSolver.EventLogger, CeresSolver.ExecutionSummary, CeresSolver.ExponentialCostFunction, CeresSolver.ExponentialFunctor, CeresSolver.FirstOrderFunction, CeresSolver.FunctionSample, CeresSolver.GoodTestTerm, CeresSolver.GradientChecker, CeresSolver.GradientCheckingCostFunction, CeresSolver.GradientCheckingIterationCallback, CeresSolver.GradientProblem, CeresSolver.GradientProblemEvaluator, CeresSolver.GradientProblemSolver, CeresSolver.GradientProblemSolverOptions, CeresSolver.GradientProblemSolverStateUpdatingCallback, CeresSolver.GradientProblemSolverSummary, CeresSolver.Graph<Vertex>, CeresSolver.HomogeneousVectorParameterization, CeresSolver.HuberLoss, CeresSolver.IdentityParameterization, CeresSolver.ImplicitSchurComplement, CeresSolver.indexValueItem<Vertex>, CeresSolver.IterationCallback, CeresSolver.IterationSummary, CeresSolver.IterativeSchurComplementSolver, CeresSolver.LBFGS, CeresSolver.LevenbergMarquardtStrategy, CeresSolver.LinearCostFunction, CeresSolver.LinearLeastSquaresProblem, CeresSolver.LinearOperator, CeresSolver.LinearSolver, CeresSolver.LinearSolverOptions, CeresSolver.LinearSolverPerSolveOptions, CeresSolver.LinearSolverSummary, CeresSolver.LinearSolverTerminationType, CeresSolver.LinearSolverType, CeresSolver.LineSearch, CeresSolver.LineSearchDirection, CeresSolver.LineSearchDirectionOptions, CeresSolver.LineSearchDirectionType, CeresSolver.LineSearchFunction, CeresSolver.LineSearchInterpolationType, CeresSolver.LineSearchMinimizer, CeresSolver.LineSearchOptions, CeresSolver.LineSearchPreprocessor, CeresSolver.LineSearchSummary, CeresSolver.LineSearchType, CeresSolver.LocalParameterization, CeresSolver.LoggingCallback, CeresSolver.LoggingType, CeresSolver.LossFunction, CeresSolver.LossFunctionWrapper, CeresSolver.LowRankInverseHessian, CeresSolver.Minimizer, CeresSolver.MinimizerOptions, CeresSolver.MinimizerType, CeresSolver.MyCostFunctor, CeresSolver.MyThreeParameterCostFunctor, CeresSolver.NonlinearConjugateGradient, CeresSolver.NonlinearConjugateGradientType, CeresSolver.NormalPrior, CeresSolver.NullJacobianFinalizer, CeresSolver.NumericDiffCostFunction<CostFunctor>, CeresSolver.NumericDiffMethodType, CeresSolver.NumericDiffOptions, CeresSolver.OnlyFillsOneOutputFunctor, CeresSolver.OrderedGroups<T>, CeresSolver.Ownership, CeresSolver.Pair<T,U>, CeresSolver.ParameterBlock, CeresSolver.PartitionedMatrixView, CeresSolver.Preconditioner, CeresSolver.PreconditionerOptions, CeresSolver.PreconditionerType, CeresSolver.PreprocessedProblem, CeresSolver.Preprocessor, CeresSolver.ProbeResults, CeresSolver.ProblemImpl, CeresSolver.ProblemOptions, CeresSolver.ProductParameterization, CeresSolver.Program, CeresSolver.ProgramEvaluator<EvaluatePreparer,JacobianWriter,JacobianFinalizer>, CeresSolver.QuaternionParameterization, CeresSolver.RandomizedCostFunction, CeresSolver.RandomizedFunctor, CeresSolver.ResidualBlock, CeresSolver.ScaledLoss, CeresSolver.SchurComplementSolver, CeresSolver.SchurEliminator, CeresSolver.SchurEliminatorBase, CeresSolver.SchurJacobiPreconditioner, CeresSolver.ScopedExecutionTimer, CeresSolver.ScratchEvaluatePreparer, CeresSolver.SizedCostFunction, CeresSolver.SizeTestingCostFunction, CeresSolver.SoftLOneLoss, CeresSolver.Solver, CeresSolver.SolverOptions, CeresSolver.SolverSummary, CeresSolver.SparseLinearAlgebraLibraryType, CeresSolver.SparseMatrix, CeresSolver.SparseMatrixPreconditionerWrapper, CeresSolver.StateUpdatingCallback, CeresSolver.SteepestDescent, CeresSolver.SubsetParameterization, CeresSolver.TerminationType, CeresSolver.TestTerm, CeresSolver.TolerantLoss, CeresSolver.TranscendentalCostFunction, CeresSolver.TranscendentalFunctor, CeresSolver.TripletSparseMatrix, CeresSolver.TripletSparseMatrixRandomMatrixOptions, CeresSolver.TrivialLoss, CeresSolver.TrustRegionMinimizer, CeresSolver.TrustRegionPreprocessor, CeresSolver.TrustRegionStepEvaluator, CeresSolver.TrustRegionStrategy, CeresSolver.TrustRegionStrategyOptions, CeresSolver.TrustRegionStrategyPerSolveOptions, CeresSolver.TrustRegionStrategySummary, CeresSolver.TrustRegionStrategyType, CeresSolver.TukeyLoss, CeresSolver.TypedLinearSolver<MatrixType>, CeresSolver.TypedPreconditioner<MatrixType>, CeresSolver.VertexDegreeLessThan<Vertex>, CeresSolver.VertexTotalOrdering<Vertex>, CeresSolver.VisibilityClusteringType, CeresSolver.WeightedGraph<Vertex>, CeresSolver.WolfeLineSearch

Field Summary

Fields

Modifier and Type	Field	Description
(package private) double[]	Bennett5Data
(package private) int	Bennett5Observations
(package private) double[]	BoxBODData
(package private) int	BoxBODObservations
(package private) CeresSolver2	ce2
protected double[]	Chiwrut1Data
protected int	Chiwrut1Observations
protected double[]	Chiwrut2Data
protected int	Chiwrut2Observations
protected double[]	DanwoodData
protected int	DanwoodObservations
(package private) double[]	Eckerle4Data
(package private) int	Eckerle4Observations
(package private) double[]	ENSOData
(package private) int	ENSOObservations
protected double[]	Gauss1Data
protected int	Gauss1Observations
protected double[]	Gauss2Data
protected int	Gauss2Observations
protected double[]	Gauss3Data
protected int	Gauss3Observations
protected double[]	Hahn1Data
protected int	Hahn1Observations
protected double[]	Kirby2Data
protected int	Kirby2Observations
protected double[]	Lanczos1Data
protected int	Lanczos1Observations
protected double[]	Lanczos2Data
protected int	Lanczos2Observations
protected double[]	Lanczos3Data
protected int	Lanczos3Observations
protected double[]	MisralaData
protected int	MisralaObservations
protected double[]	MisralbData
protected int	MisralbObservations
protected double[]	MisralcData
protected int	MisralcObservations
protected double[]	MisraldData
protected int	MisraldObservations
protected double[]	NelsonData
protected int	NelsonObservations
(package private) double[]	Rat42Data
(package private) int	Rat42Observations
(package private) double[]	Rat43Data
(package private) int	Rat43Observations
(package private) double[]	Roszman1Data
(package private) int	Roszman1Observations
(package private) double[]	ThurberData
(package private) int	ThurberObservations

Fields inherited from class gov.nih.mipav.model.algorithms.CeresSolver

BAD_TEST_TERM_EXAMPLE, COST_FUNCTOR_EXAMPLE, CURVE_FITTING_EXAMPLE, curveFittingData, curveFittingObservations, default_relstep, DYNAMIC, EASY_COST_FUNCTION, EASY_FUNCTOR_EXAMPLE, epsilon, ERROR, EXPONENTIAL_COST_FUNCTION, EXPONENTIAL_FUNCTOR, FATAL, GOOD_TEST_TERM_EXAMPLE, INFO, LINEAR_COST_FUNCTION_EXAMPLE, m, MAX_LOG_LEVEL, MY_COST_FUNCTOR, MY_THREE_PARAMETER_COST_FUNCTOR, N0, ONLY_FILLS_ONE_OUTPUT_FUNCTOR, optionsValid, RANDOMIZED_COST_FUNCTION, RANDOMIZED_FUNCTOR, SIZE_TESTING_COST_FUNCTION, svd, TEST_TERM_EXAMPLE, testCase, testMode, TRANSCENDENTAL_COST_FUNCTION, TRANSCENDENTAL_FUNCTOR, WARNING

Constructor Summary

Constructors

Constructor	Description
CeresSolverNISTTest()

Method Summary

Modifier and Type	Method	Description
boolean	fitToExternalFunction(double[] x, double[] residuals, double[][] jacobian)
void	runBennett5CostFunctionExample()
void	runBoxBODCostFunctionExample()
void	runChiwrut1CostFunctionExample()
void	runChiwrut2CostFunctionExample()
void	runDanwoodCostFunctionExample()
void	runEckerle4CostFunctionExample()
void	runENSOCostFunctionExample()
void	runGauss1CostFunctionExample()
void	runGauss2CostFunctionExample()
void	runGauss3CostFunctionExample()
void	runHahn1CostFunctionExample()
void	runKirby2CostFunctionExample()
void	runLanczos1CostFunctionExample()
void	runLanczos2CostFunctionExample()
void	runLanczos3CostFunctionExample()
void	runMisralaCostFunctionExample()
void	runMisralbCostFunctionExample()
void	runMisralcCostFunctionExample()
void	runMisraldCostFunctionExample()
void	runNelsonCostFunctionExample()
void	runRat42CostFunctionExample()
void	runRat43CostFunctionExample()
void	runRoszman1CostFunctionExample()
void	runThurberCostFunctionExample()

Methods inherited from class gov.nih.mipav.model.algorithms.CeresSolver

AppendArrayToString, ApplyOrdering, BuildResidualLayout, ComputeHouseholderVector, ComputeRecursiveIndependentSetOrdering, ComputeSchurOrdering, ComputeStableSchurOrdering, copyFunctionSample, Create, Create, Create, Create, Create, Create, Create, CreateDiagonalMatrix, CreateEvaluatorScratch, CreateGradientCheckingCostFunction, CreateGradientCheckingProblemImpl, CreateHessianGraph, CreateLinearLeastSquaresProblemFromId, CreateOrdering, createPartitionedMatrixView, CreatePreprocessor, CreateRandomMatrix, CreateRandomMatrix, createSchurEliminatorBase, CreateSparseDiagonalMatrix, DetectStructure, DifferentiatePolynomial, DumpLinearLeastSquaresProblem, DumpLinearLeastSquaresProblemToConsole, DumpLinearLeastSquaresProblemToTextFile, EigenQuaternionProduct, EvaluateCostFunction, EvaluateJacobianColumn, EvaluateJacobianForParameterBlock, EvaluateJacobianForParameterBlock, EvaluatePolynomial, EvaluateRiddersJacobianColumn, ExpectClose, FindInterpolatingPolynomial, FindInvalidValue, FindLinearPolynomialRoots, FindPolynomialRoots, FindQuadraticPolynomialRoots, FindWithDefault, FindWithDefault, GetBestSchurTemplateSpecialization, GradientProblemSolverOptionsToSolverOptions, IndependentSetOrdering, InvalidateArray, InvalidateArray, InvalidateArray, InvalidateArray, InvertPSDMatrix, IsArrayValid, IsArrayValid, IsArrayValid, IsArrayValid, IsClose, IsOrderingValid, IsSchurType, IsSolutionUsable, IsSolutionUsable, LexicographicallyOrderResidualBlocks, LinearLeastSquaresProblem0, LinearLeastSquaresProblem1, LinearLeastSquaresProblem2, LinearLeastSquaresProblem3, LinearLeastSquaresProblem4, LinearSolverForZeroEBlocks, LinearSolverTypeToString, LineSearchDirectionTypeToString, LineSearchInterpolationTypeToString, LineSearchTypeToString, MatrixMatrixMultiply, MatrixMatrixMultiply, MatrixMatrixMultiply, MatrixMatrixMultiply, MatrixTransposeMatrixMultiply, MatrixTransposeVectorMultiply, MatrixVectorMultiply, MaybeReorderSchurComplementColumnsUsingEigen, MaybeReorderSchurComplementColumnsUsingSuiteSparse, Minimize, MinimizeInterpolatingPolynomial, MinimizePolynomial, MinParameterBlock, NonlinearConjugateGradientTypeToString, operator, PostSolveSummarize, PreconditionerForZeroEBlocks, PreconditionerTypeToString, QuaternionProduct, RandDouble, RandDouble, RandNormal, RemoveLeadingZeros, ReorderProgramForSchurTypeLinearSolver, RunCallbacks, SchurStructureToString, SetSummaryFinalCost, SetSummaryFinalCost, SetupCommonMinimizerOptions, Solve, Solve, StableIndependentSetOrdering, SummarizeReducedProgram, swap, TerminationTypeToString, TransposeForCompressedRowSparseStructure, Uniform, WriteArrayToFileOrDie, WriteStringToFileOrDie

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ce2

CeresSolver2 ce2

MisralaObservations

protected final int MisralaObservations

See Also:

Constant Field Values

MisralaData

protected double[] MisralaData

MisralbObservations

protected final int MisralbObservations

See Also:

Constant Field Values

MisralbData

protected double[] MisralbData

Chiwrut1Observations

protected final int Chiwrut1Observations

See Also:

Constant Field Values

Chiwrut1Data

protected double[] Chiwrut1Data

Chiwrut2Observations

protected final int Chiwrut2Observations

See Also:

Constant Field Values

Chiwrut2Data

protected double[] Chiwrut2Data

Lanczos3Observations

protected final int Lanczos3Observations

See Also:

Constant Field Values

Lanczos3Data

protected double[] Lanczos3Data

Gauss1Observations

protected final int Gauss1Observations

See Also:

Constant Field Values

Gauss1Data

protected double[] Gauss1Data

Gauss2Observations

protected final int Gauss2Observations

See Also:

Constant Field Values

Gauss2Data

protected double[] Gauss2Data

DanwoodObservations

protected final int DanwoodObservations

See Also:

Constant Field Values

DanwoodData

protected double[] DanwoodData

Gauss3Observations

protected final int Gauss3Observations

See Also:

Constant Field Values

Gauss3Data

protected double[] Gauss3Data

MisralcObservations

protected final int MisralcObservations

See Also:

Constant Field Values

MisralcData

protected double[] MisralcData

MisraldObservations

protected final int MisraldObservations

See Also:

Constant Field Values

MisraldData

protected double[] MisraldData

Lanczos1Observations

protected final int Lanczos1Observations

See Also:

Constant Field Values

Lanczos1Data

protected double[] Lanczos1Data

Lanczos2Observations

protected final int Lanczos2Observations

See Also:

Constant Field Values

Lanczos2Data

protected double[] Lanczos2Data

Kirby2Observations

protected final int Kirby2Observations

See Also:

Constant Field Values

Kirby2Data

protected double[] Kirby2Data

Hahn1Observations

protected final int Hahn1Observations

See Also:

Constant Field Values

Hahn1Data

protected double[] Hahn1Data

NelsonObservations

protected final int NelsonObservations

See Also:

Constant Field Values

NelsonData

protected double[] NelsonData

Roszman1Observations

final int Roszman1Observations

See Also:

Constant Field Values

Roszman1Data

double[] Roszman1Data

ENSOObservations

final int ENSOObservations

See Also:

Constant Field Values

ENSOData

double[] ENSOData

ThurberObservations

final int ThurberObservations

See Also:

Constant Field Values

ThurberData

double[] ThurberData

BoxBODObservations

final int BoxBODObservations

See Also:

Constant Field Values

BoxBODData

double[] BoxBODData

Rat42Observations

final int Rat42Observations

See Also:

Constant Field Values

Rat42Data

double[] Rat42Data

Rat43Observations

final int Rat43Observations

See Also:

Constant Field Values

Rat43Data

double[] Rat43Data

Eckerle4Observations

final int Eckerle4Observations

See Also:

Constant Field Values

Eckerle4Data

double[] Eckerle4Data

Bennett5Observations

final int Bennett5Observations

See Also:

Constant Field Values

Bennett5Data

double[] Bennett5Data

Constructor Detail

CeresSolverNISTTest

public CeresSolverNISTTest()

Method Detail

fitToExternalFunction

public boolean fitToExternalFunction(double[] x,
                                     double[] residuals,
                                     double[][] jacobian)

Specified by:

fitToExternalFunction in class CeresSolver

runMisralaCostFunctionExample

public void runMisralaCostFunctionExample()

runMisralbCostFunctionExample

public void runMisralbCostFunctionExample()

runChiwrut1CostFunctionExample

public void runChiwrut1CostFunctionExample()

runChiwrut2CostFunctionExample

public void runChiwrut2CostFunctionExample()

runLanczos3CostFunctionExample

public void runLanczos3CostFunctionExample()

runGauss1CostFunctionExample

public void runGauss1CostFunctionExample()

runGauss2CostFunctionExample

public void runGauss2CostFunctionExample()

runDanwoodCostFunctionExample

public void runDanwoodCostFunctionExample()

runGauss3CostFunctionExample

public void runGauss3CostFunctionExample()

runMisralcCostFunctionExample

public void runMisralcCostFunctionExample()

runMisraldCostFunctionExample

public void runMisraldCostFunctionExample()

runLanczos1CostFunctionExample

public void runLanczos1CostFunctionExample()

runLanczos2CostFunctionExample

public void runLanczos2CostFunctionExample()

runKirby2CostFunctionExample

public void runKirby2CostFunctionExample()

runHahn1CostFunctionExample

public void runHahn1CostFunctionExample()

runNelsonCostFunctionExample

public void runNelsonCostFunctionExample()

runRoszman1CostFunctionExample

public void runRoszman1CostFunctionExample()

runENSOCostFunctionExample

public void runENSOCostFunctionExample()

runThurberCostFunctionExample

public void runThurberCostFunctionExample()

runBoxBODCostFunctionExample

public void runBoxBODCostFunctionExample()

runRat42CostFunctionExample

public void runRat42CostFunctionExample()

runRat43CostFunctionExample

public void runRat43CostFunctionExample()

runEckerle4CostFunctionExample

public void runEckerle4CostFunctionExample()

runBennett5CostFunctionExample

public void runBennett5CostFunctionExample()