Package gov.nih.mipav.view

Class ViewJFrameTriImage

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

gov.nih.mipav.view.ViewJFrameBase

gov.nih.mipav.view.ViewJFrameTriImage

All Implemented Interfaces:

VOIManagerInterfaceListener, ViewImageUpdateInterface, ActionListener, ComponentListener, ItemListener, KeyListener, MouseListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

Direct Known Subclasses:

ViewJFrameMultimodalitySingleViewer, ViewJFrameMultimodalityViewer

public class ViewJFrameTriImage
extends ViewJFrameBase
implements ItemListener, ChangeListener, KeyListener, MouseListener, VOIManagerInterfaceListener

This program works with 3D and 4D images. Makes a frame and puts 3 images into it - an XY image in the upper left quadrant, a ZY image in the upper right quadrant, and a XZ image in the lower left quadrant. The XY image always has increasing X going from left to right and increasing Y going from top to bottom. If the image orientation is FileInfoBase.UNKNOWN_ORIENT, the ZY image has Z increasing from left to right and Y increasing from top to bottom. If the image orientation is known, the ZY image has Y increasing from left to right and Z increasing from bottom to top. The XZ image always has X increasing from left to right. If the orientation is unknown, Z increases from top to bottom. If the orientation is known, Z increases from bottom to top. If the image orientation is known XY has an axial slice, ZY has a sagittal slice, and XZ has a coronal slice. The lower right quadrant displays the X, Y, and Z coordinates of the point selected.

There are 2 menus - a file menu and an options menu. The file menu only has a close frame command. The Options menu has a Show Axes command,a Show Crosshairs command, a show Talairach grid, a show Talairach position command, and a Link to another image command.

There are 2 rows of toolbar buttons. The first row has 15 toolbar buttons:
1.) Traverse image with pressed mouse button. As you traverse the XY image, the XY image is unchanged. The X slice shown in the ZY image changes and the Y coordinate in the ZY image changes. The Z coordinate in the ZY image remains unchanged. The Y slice shown in the XZ image changes and the X coordinate in the XZ image changes. The Z coordinate shown in the XZ image remains unchanged. Analagous operation for traversing the ZY and XZ slices.
2.) Magnify image 2.0X. Note that magnification is always a power of 2.
3.) Magnify image 0.5X.
4.) Set image magnification to 1.0X.
5.) Draw a line VOI which can be used for measurement. 6.) Identify center of volume to determine translations. Centers are moved with mouse dragging operations. Plus sign markers appear to show the new center for each image. Otherwise, operation is similar to the traverse command. The centers disappear when traverse mode is entered.
7.) Alignment tool to determine rotations. Protractors with 2 line segments intersecting in a common point appear in all 3 images. By putting a cursor at the tip of a protractor line segment and pressing the mouse button, it is possible to shrink, grow, or rotate the line segment. The thicker line segment is the reference line segment which will always click into a vertical or horizontal orientation(whichever is closer) when the mouse button is released. The thinner line segment can be left in any orientation. The angle is measured in degrees by going clockwise from the thick reference segment to the thinner segment. When the mouse button is pressed with the cursor on the protractor, the angle in degrees will appear. If the cursor is placed over a part of the protractor other than a nonintersecting line segment end and the mouse button is pressed, then the protractor can be moved unchanged in size and angle.
8.) Apply rotations and translations. An apply transformation matrix dialog appears. Under Destination radio buttons for new image and replace image are present. Under interpolation a combo box with trilinear, bspline 3rd order, and bspline 4rth order are present. Apply and cancel buttons are present on the bottom of the dialog. For 4D images apply the same transformation to all time slices.
9.) Add a non center point to all images.
10.) New VOI.
11.) Delete a non center point from all images.
12.) Bounding cube to set boundaries for cropping.
13.) Crop the image using the bounding cube boundaries. For 4D images apply the same cropping to all time slices.
14.) (**REMOVED**)Bring up a dialog for placing markers to create a new image in the AC-PC aligned view.
15.) (**REMOVED**)Bring up a dialog for placing markers to create a new Talairach space image from an image in the AC-PC aligned view.

The second toolbar row is a paint toolbar with 14 buttons:
1.) Draw using a brush.
2.) Pick up a color from an image.
3.) Fills an area with the desired color - the Paint Grow dialog box appears. The box has an upper bound slider, a lower bound slider, and text fields for entering maximum size and maximum distance. Apply and cancel buttons are present.
4.) Erases a portion of the image.
5.) Erases all paint.
6.) Draw using small size.
7.) Draw using medium size.
8.) Draw using large size.
9.) Change intensity level of the paint - a desired paint intensity dialog box appears. The box tells the minimum and maximum allowed intensity levels. The user inputs inputs the desired intensity level. Apply and cancel buttons are present. Pressing the apply button causes the desired intensity level to be placed in intensityDropper. The initial desired intensity level is 1.
10.) Change paint color - a pick paint color dialog box appears. If controls is not null, the original value of color is given by color = controls.getTools().paintColor; Otherwise, the original value is taken as new Color(255,0,0).
11.) Change opacity of paint - a paint opacity dialog box appears. If controls is not null, the original value of opacity is given by OPACITY = controls.getTools().opacity; Otherwise, the original value is taken as 0.25. The dialog box has a slider whose value can be varied from 0 to 1.
12.) Commit - Changes image where painted. The painted pixels are given values equal to intensityDropper and the paint is erased.
13.) Undo last paint region created by a mouse release.
14.) Calculate volume of paint.

If imageA and imageB are both loaded, an Active Image Panel with 3 radio buttons, image A, imageB, and both appears. Commit paint changes and apply rotations and translations may be selected for imageA, imageB, or both.

With 4D images a slider for the fourth time dimension appears below the second toolbar.

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	ViewJFrameTriImage.OkColorListener	Listener to pass to JColorChooser when user wants to change the color of the paint.
(package private) class	ViewJFrameTriImage.PaintBoxRenderer	DOCUMENT ME!

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
protected JToggleButton	addPointToggleButton	Toggle buttons for voi/points
static final float	ATLAS_AC_TO_ANT	Dimensions used for Talairach coordinates - anterior.
static final float	ATLAS_AC_TO_INF	Dimensions used for Talairach coordinates - inferior.
static final float	ATLAS_AC_TO_LAT	Dimensions used for Talairach coordinates - lateral.
static final float	ATLAS_AC_TO_PC	AC to PC dimension.
static final float	ATLAS_AC_TO_SUP	Dimensions used for Talairach coordinates - superior.
static final float	ATLAS_BBOX_ANT	Dimensions used for Talairach view clipping box - anterior.
static final float	ATLAS_BBOX_INF	Dimensions used for Talairach view clipping box - inferior.
static final float	ATLAS_BBOX_INF_NEW	Dimensions used for Talairach view clipping box - inferior new. 3/06/96: extra 10 mm for cerebellum .
static final float	ATLAS_BBOX_LAT	Dimensions used for Talairach view clipping box - lateral.
static final float	ATLAS_BBOX_POS	Dimensions used for Talairach view clipping box - posterior.
static final float	ATLAS_BBOX_SUP	Dimensions used for Talairach view clipping box - superior.
static final float	ATLAS_PC_TO_POS	Dimensions used for Talairach coordinates - posterior.
static final int	AXIAL_A	DOCUMENT ME!
static final int	AXIAL_AB	DOCUMENT ME!
static final int	AXIAL_B	DOCUMENT ME!
JToggleButton	bogusBorderPaintButton
JToggleButton	borderPaintButton
protected JToggleButton[]	btnInvisible	DOCUMENT ME!
protected int	bufferFactor	1 for black and white, 4 for color.
protected boolean	centerButtonSelected	DOCUMENT ME!
protected JCheckBox	chkShowTalairachGrid	"Show talairach grid" checkbox.
protected JCheckBox	chkShowTalairachGridMarkers	"Show talairach gridmarkers" checkbox.
protected Color	color	Color of the paint.
protected ViewJColorChooser	colorChooser	Color chooser to use when selecting paint color.
protected JButton	colorPaintButton	Button for changing the color of the paint.
protected ViewControlsImage	controls	Used to obtain initial paint opacity and color.
protected Vector<CoordinateChangeListener>	coordinateListeners	A list of CoordinateChangeListeners who want to know about changes to the coordinate currently pointed to by the tri-image frame's crosshairs.
static final int	CORONAL_A	DOCUMENT ME!
static final int	CORONAL_AB	DOCUMENT ME!
static final int	CORONAL_B	DOCUMENT ME!
protected JSpinner	crosshairSpinner	Spinner component for the crosshair gap size.
protected Point3D	currentAbsolutePositionLabels	The current values of the absolute position labels.
private int	currentOrientation
protected static final int	DEFAULT_OPTIMAL_ZOOM	Constant to determine how many pixels would be optimal for the image to be initially zoomed to.
protected int	defaultPreferredHeight	The default hight of the window, if it cannot be calculated.
protected JToggleButton	dropperPaintToggleButton	Toggle buttons for voi/points
protected int[]	extents	Extents of image.
protected static final String	IMAGE_ALIGN_TOOLBAR
protected JToolBar	imageAlignToolBar
protected JToolBar	imageToolBar	Image control toolbar.
protected JToggleButton	indivMagButton	refs to indiviadual frame zooming in and out buttons.
protected JToggleButton	indivMinButton	refs to indiviadual frame zooming in and out buttons.
protected JSpinner	intensitySpinner	Spinner component for the paint intensity.
protected JLabel	iTalLabel	talaraich intensity label*
protected JTextField	labelXTal	Label the Talairach position x value in the image volume.
protected JTextField	labelYTal	Label the Talairach position y value in the image volume.
protected JTextField	labelZTal	Label the Talairach position z value in the image volume.
protected JButton	leastSquaresButton	DOCUMENT ME!
protected JButton	magButton	refs to the magnify and minimize button
static final int	MAX_INITIAL_TRI_IMAGES	Maximum number of initial tri-images!
protected ViewMenuBuilder	menuObj	Menu items storage.
protected JButton	minButton	refs to the magnify and minimize button
protected static final int	NUM_INVISIBLE_BUTTONS	We want to be able to toggle the bounding box button, but don't want it to be part of any other button group.
protected static final String	OLD_LAYOUT	A constant for which to test in the actionPerformed.
protected boolean	oldLayout	DOCUMENT ME!
protected float	OPACITY	Opacity of paint.
protected static final String	PAINT_TOOLBAR
protected JComboBox	paintBox	Box holding the list of available paint brushes.
private boolean	paintBrushLocked	used with the above to say the paint brush has been changed, waiting to change back.
protected String[]	paintBrushNames	List of built-in and user-defined paint brushes.
protected JToggleButton	paintCanToggleButton	Toggle buttons for voi/points
protected JToolBar	paintToolBar	Paint tool bar.
protected static final String	PANEL_PLUGIN	A constant for which to test in the actionPerformed.
protected JPanel	panelActiveImage	Panel for deciding which image is active; appears when 2 images are loaded.
protected JPanel	panelToolbar	Panel that holds the toolbars.
protected GridBagConstraints	panelToolBarGBC
protected ViewJFrameImage	parentFrame	Reference to the parent window.
protected Component	pluginPanel	Reference to the plug-in panel in the 2x2 (old) layout.
private int	quickPaintBrushIndex	int used for quick-key painting for speedier paint brush access.
protected JRadioButton	radioImageA	Radio button for selecting image A as active.
protected JRadioButton	radioImageB	Radio button for selecting image B as active.
protected JRadioButton	radioImageBoth	Radio button for selecting both images as active.
protected float[]	resols	Resolutions of image.
protected ModelRGB	RGBTa	RGB tables for imageA and imageB
protected ModelRGB	RGBTb	RGB tables for imageA and imageB
static final int	SAGITTAL_A	DOCUMENT ME!
static final int	SAGITTAL_AB	DOCUMENT ME!
static final int	SAGITTAL_B	DOCUMENT ME!
protected JCheckBox	scrollButton	The button that indicates whether this triframe is linked with tri-frames of similar dimensionality.
protected boolean	scrollOriginalCrosshair	Flag telling the crosshair movement to update slice in original image frame.
JScrollPane[]	scrollPane	DOCUMENT ME!
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
protected boolean	showTalairachGrid	Flag for showing the Talairach grid on the component images.
protected boolean	showTalairachPosition	Flag for showing the Talairach position on the component images.
private double	spinnerDefaultValue	Used to setup the paint spinner.
private double	spinnerMax	Used to setup the paint spinner.
private double	spinnerMin	Used to setup the paint spinner.
private double	spinnerStep	Used to setup the paint spinner.
protected JPanel	talairachPanel	Panel for Talairach position display.
protected int	tDim	Time dimension of the original image.
protected JSlider	tImageSlider	Slider for 4D images, time dimension.
protected ViewToolBarBuilder	toolbarBuilder	Toolbar builder reference.
protected JButton	tpSplineButton	DOCUMENT ME!
protected JToggleButton	traverseButton	Button for traversing the images.
ViewJComponentTriImage[]	triImage	DOCUMENT ME!
JPanel[]	triImagePanel	DOCUMENT ME!
protected int	tSlice	Time slice that this image is on.
JLabel	tTalVoxLabel	talairach voxel label *
protected int[]	units	Units of image - mm, inches, etc.
protected boolean	useInfNew	if true use cerebellum-adjusted static variable.
(package private) static int	v
protected JPanel	viewPanel	Panel for switching between radiological and neurological viewing conventions.
protected static final String	VOI_TOOLBAR
protected ButtonGroup	VOIGroup
protected VOIManagerInterface	voiManager	The VOI managers for each triComponent
protected JMenu	voiMenu	Menu displaying VOI options
private CubeBounds	volumeBounds	Volume Boundary may be changed for cropping the volume.
protected int[]	volumeCenter	The point to become center of transformed image.
protected VolumePositionFrame	volumePositionFrame	Reference to the volume coordinate frame.
protected JPanel	volumePositionPanel	Reference to the volume coordinate panel when it is in the plug-in position.
protected JLabel	xTalLabel
protected JLabel	yTalLabel
protected float	zoom	Magnification for image.
protected JLabel	zTalLabel

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
ViewJFrameTriImage(ModelImage _imageA, ModelImage _imageB)	Creates a JFrameBase without calling gui initialization, init() must be called after pre-processing has completed.
ViewJFrameTriImage(ModelImage _imageA, ModelLUT LUTa, ModelImage _imageB, ModelLUT LUTb, ViewControlsImage controls, ViewJFrameImage parent)	Make a frame and puts an image component into it.
ViewJFrameTriImage(ModelImage _imageA, ModelLUT LUTa, ModelRGB RGBTa, ModelImage _imageB, ModelLUT LUTb, ModelRGB RGBTb, ViewControlsImage controls, ViewJFrameImage parent)

Method Summary

Modifier and Type	Method	Description
void	absoluteGoTo()	Method that goes to the absolute voxel coordinate that is entered
void	actionPerformed(ActionEvent event)	Calls various methods depending on the action.
void	addCoordinateChangeListener(CoordinateChangeListener listener)	Add someone who wants to be notified about crosshair coordinate changes.
void	addSphereVOIs(VOI annotations)
void	addTabbedPane()	Called when the volumePositionFrame closes, the volumePositionPanel is again displayed in the window:.
private void	adjustScrollbars(int frame, int x, int y)	This method adjust the scrollbars to area where user clicked when doing individual frame zooming in and out.
private void	adjustScrollbars(int x, int y, JScrollPane scrollPane)	DOCUMENT ME!
protected void	buildActiveImagePanel()	Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
protected void	buildDisabledTextButton(String text, String toolTip, String action, JToolBar toolbar)	Helper method to build a text button for the toolbar.
protected void	buildIconButton(String icon, String toolTip, String action, String iconroll, JToolBar toolbar)	Helper method to build an icon button for the toolbar.
protected void	buildImageAlignToolBar()
private void	buildLabels()	Convenience method created to simplify configureFrame().
protected void	buildLUTs()	Convenience method created to simplify configureFrame().
protected JToolBar	buildMagToolBar(int boxLayout)	Builds the image toolbar for zooming
protected JMenuBar	buildMenu()	Builds menus for the tri-planar view.
protected JButton	buildNamedTextButton(String text, String toolTip, String action, JToolBar toolbar)	Helper method to build a text button for the toolbar.
protected JToolBar	buildPaintToolBar(int boxLayout)	Builds the paint toolbar
protected void	buildProgressBar(String imageName, String message, int start, int end)	Constructs progress bar.
protected Hashtable<Integer,JLabel>	buildTImageSliderLabels(int min, int max)	Builds the slider labels for the time slider.
protected void	buildToggleButton(String icon, String toolTip, String action, String iconroll, ButtonGroup group, JToolBar toolbar)	Helper method to build a toggle button for the toolbar.
protected void	buildToggleButton(String icon, String toolTip, String action, String iconroll, ButtonGroup group, JToolBar toolbar, boolean selected)	Helper method to build a toggle button for the toolbar.
protected JMenu	buildToolbarMenu(boolean showPaintToolbar)
protected void	buildToolbars()	Builds the toolbars for the tri-planar view.
protected ViewJComponentTriImage	buildTriImage(ModelImage imageA, ModelLUT lutA, ModelRGB RGBTa, ModelImage imageB, ModelLUT lutB, ModelRGB RGBTb, int orientation)	This method creates an image from the two ModelImage objects and ModelLUT objects passed as parameters.
protected void	buildVolumePositionPanel()	Builds the volume position panel, which is the panel that sits in the plug-in area of the 2x2 tri-planar layout.
protected final void	cleanVolumePositionPanel()	Clears the volumePositionPanel, so it can be recreated when the volumePositionFrame is closed:.
void	closeImageB()	Closes the image B and performs cleanup.
protected void	configureFrame()	Constructs main frame structures for 3 images (image A only) or 9 images (image A and image B).
void	create3DVOI(boolean bIntersection)
void	disposeLocal()	Should be called when window is closing to perform cleanup.
protected void	doOldLayout()	This is an alternative layout arrangement.
void	enableBoth(boolean bEnable)
protected void	finalize()	DOCUMENT ME!
protected void	fireCoordinateChange(int i, int j, int k)	Tell coordinate change listeners about a coordinate change (after changing the coordinate to image volume space from the tri-planar space).
ModelImage	getActiveImage()
ModelLUT	getActiveLUT()
ModelRGB	getActiveRGB()
int	getAxialComponentSlice()	Gets the axial position of the slice.
CubeBounds	getBoundedVolume()	Returns the crop bounding volume as a CubeBounds object.
int[]	getCenter()	Sets the x coordinate of the point to be the center of the transformed image.
WildMagic.LibFoundation.Mathematics.Vector3f	getCenterPt()
ViewControlsImage	getControls()	Gets reference to control widgets for frame.
int	getCoronalComponentSlice()	Gets the y position of the slice.
int	getCurrentOrientation()
Point3D	getCurrentPositionLabels()	Get the last point that the position labels got set to.
JFrame	getFrame()
ModelImage	getImageA()	Accessor that returns the reference to imageA.
ModelImage	getImageB()	Accessor that returns the reference to imageB.
ViewJFrameTriImage	getLinkedTriFrame()	Gets the linked ViewJFrameTriImage.
protected float	getOptimalZoom(int desiredWidth, int desiredHeight)	Calculates the optimal zoom value for an image based on the two parameters desiredWidth and desiredHeight.
ViewJFrameImage	getParentFrame()	Returns a reference to the ViewJFrameImage object that is the parent of this frame.
int	getSagittalComponentSlice()	Gets the x position of the slice.
int	getSelectedImage()	Returns an integer which represents the image that is selected.
ViewJComponentTriImage	getTriImage(int index)	Returns a reference to one of the component tri-image components.
JLabel	gettTalVoxLabel()
VOIManagerInterface	getVOIManager()
Color	getXSliceHairColor()	Gets the color of the X slice crosshair.
Color	getYSliceHairColor()	Gets the color of the Y slice crosshair.
Color	getZSliceHairColor()	Gets the color of the Z slice crosshair.
protected void	handleLeastSquares()	Method handles transformations for least squares algorithm in the tri-planar frame.
protected void	handlePluginPanelSelection()	This method will load a plug-in into the plug-in area of the tri-planar frame.
protected void	handleTPSpline()	DOCUMENT ME!
protected void	init()	Initialize the the image orientations and call the frame layout method 'configureFrame()'.
protected void	initProgressBar()	Initializes the progress bar.
protected void	initVOI()	Initialize the 3D VOI interface.
boolean	isFocusable()	Always returns true.
protected boolean	isMultipleSameSizeTriImages()	Helper method to establish if there are images of the same dimensionality so that a dialog can be created.
void	itemStateChanged(ItemEvent event)	Does setBorderPainted for the appropriate button.
void	keyPressed(KeyEvent e)	keyPressed event method for KeyListener.
void	keyReleased(KeyEvent e)	keyReleased event method for KeyListener.
void	keyTyped(KeyEvent e)	DOCUMENT ME!
protected JButton	makeSeparator()	Makes a separator for the use in the toolbars.
void	maskToPaint()
void	mouseClicked(MouseEvent event)	DOCUMENT ME!
void	mouseEntered(MouseEvent event)	DOCUMENT ME!
void	mouseExited(MouseEvent event)	DOCUMENT ME!
void	mousePressed(MouseEvent event)	DOCUMENT ME!
void	mouseReleased(MouseEvent event)	DOCUMENT ME!
void	paintToShortMask()
void	paintToUbyteMask()
void	PointerActive(boolean bActive)
WildMagic.LibFoundation.Mathematics.Vector3f	PropDown(int iActive)
WildMagic.LibFoundation.Mathematics.Vector3f	PropUp(int iActive)
void	removeControls()	Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
void	removeCoordinateChangeListener(CoordinateChangeListener listener)	Remove a coordinate change listener from this frame's list.
private void	scannerLPSGoTo()	Method that goes to the lps coordinate that is entered
private void	scannerRASGoTo()	Method that goes to the ras coordinate that is entered
void	setActiveImage(int active)	Set the active image for drawing VOIs.
void	setActiveImage(ModelImage kImage)
void	setAlphaBlend(int value)	Sets the alpha blending of parameter for two image displaying.
void	setCenter(int i, int j, int k)	sets the crosshair positions and slices for each of the triImages.
void	setCenter(int i, int j, int k, boolean checkLinkedScroll)	sets the crosshair positions and slices for each of the triImages.
void	setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
void	setControls()	Sets the menu and controls (i.e. toolbars) of the main frame!
void	setCrop(WildMagic.LibFoundation.Mathematics.Vector3f lower, WildMagic.LibFoundation.Mathematics.Vector3f upper)	Sets the new crop volume in the ViewJComponentTriImage frames and sets the volumeBounds.
void	setCurrentOrientation(int currentOrientation)
void	setCursor(Cursor kCursor)
void	setDefault()	Sets modes in all images to ViewJComponentBase.DEFAULT.
void	setEnabled(boolean flag)	Controls whether or not the images/VOIs of the frame can be modified.
void	setImageA(ModelImage image)	Changes imageA to a new model image reference.
protected void	setImageActiveInTriComponents(int activeImage)	DOCUMENT ME!
void	setImageB(ModelImage _imageB)	Accessor that sets the reference to imageB.
void	setImageB(ModelImage _imageB, boolean disposeOldB)	Accessor that sets the reference to imageB.
void	setImageSelectorPanelVisible(boolean visible)	this method either shows or hides the image selector panel, based on the value of the parameter.
void	setIntensityDropper(float intensityDropper)	Sets paint intensity in axial image.
void	setIntensityPaintName(float intensityDropper)	Sets integer value on intensityPaintButton.
void	setLinkButtonSelected(boolean selected)	Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true
void	setLUTa(ModelLUT LUT)	Accessor that sets the LUT.
void	setLUTb(ModelLUT LUT)	Accessor that sets the LUT.
void	setModified()
protected void	setOldLayout(boolean bLayout)	Transition between the 2x2 window layout and 3x1 window layout:
void	setPaintBitmapSwitch(boolean paintBitmapSwitch)	When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.
void	setPaintColor(Color color)	Sets the color of the paint.
void	setPaintMask(BitSet mask)
void	setPositionLabels(int x, int y, int z)	Sets the labels which show the absolute position within the image volume and the patient position.
void	setRGBTA(ModelRGB RGBT)	Sets the RGB table for ARGB image A.
void	setRGBTB(ModelRGB RGBT)	Sets the RGB table for image B.
void	setSlice(int slice)	Does nothing.
void	setSlices(int x, int y, int z)	Sets the slice index for each plane in the frame and components.
void	setSlicesFromFrame(int x, int y, int z)	Called from the "normal" image component, sets the slices for the tri planar view to display.
private void	setSpinnerValues(int type)	Sets the spinner values based on image type.
protected void	setTalairachPositionLabels(int x, int y, int z)	Sets the labels that refer to Talairach position within the image.
void	setTimeSlice(int slice)	Sets the slice to be displayed and updates title frame.
void	setTimeSlice(int slice, boolean checkedLinkedScroll)	Sets the slice to be displayed and updates title frame.
void	setTitle()	Sets the title bar for the tri-image frame.
void	setTraverseButton()	Sets the traverse button to selected.
void	settTalVoxLabelText(String text)
private void	setVolumeBounds(WildMagic.LibFoundation.Mathematics.Vector3f lower, WildMagic.LibFoundation.Mathematics.Vector3f upper)	Sets the CubeBounds data member volumeBounds to the crop volume defined by the lower and upper volume points.
void	setVolumeCenter(int x, int y, int z)	Sets the x coordinate of the point to be the center of the transformed image.
void	setVolumeCenter(Point3D newVolumeCenter)	Sets the x coordinate of the point to be the center of the transformed image.
void	setXSliceHairColor(Color c)	Sets the color of the X slice crosshairs.
void	setYSliceHairColor(Color c)	Sets the color of the Y slice crosshairs.
void	setZSliceHairColor(Color c)	Sets the color of the Z slice crosshairs.
void	stateChanged(ChangeEvent e)	Sets values based on knob along time slider.
private void	talairachGoTo()	Method that goes to the talairach coordinate that is entered
void	updateData()
protected void	updateHistoLUTFrame(int imageAorB)	Deprecated.
boolean	updateImageExtents()	Do nothing - required by ViewJFrameBase.
boolean	updateImages()	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(boolean forceShow)	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(boolean forceShow, int interpMode)	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)	This methods calls the componentImage's update method to redraw the screen.
void	updateImageSubset(ViewJComponentTriImage triImage)	DOCUMENT ME!
protected void	updateLayout()	This method should be called whenever the layout of the tri-images has changed.
protected void	updatePaint(BitSet paintMap)	The purpose of this method is to set the paint bitmap so that it is the same for all 9 images.
void	windowClosing(WindowEvent event)	Closes window and disposes of frame and component.
void	windowOpened(WindowEvent event)	Does nothing.
protected void	zoomInFrame(int frame)	this method will zoom in a particular frame.
protected void	zoomOutFrame(int frame)	this method will zoom out a particular frame.

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

about, buildLabelPanel, canCloseImageBAfterLoad, close, close, componentHidden, componentMoved, componentResized, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTA, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Details

IMAGE_ALIGN_TOOLBAR

protected static final String IMAGE_ALIGN_TOOLBAR

See Also:

• Constant Field Values

VOI_TOOLBAR

protected static final String VOI_TOOLBAR

See Also:

• Constant Field Values

PAINT_TOOLBAR

protected static final String PAINT_TOOLBAR

See Also:

• Constant Field Values

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

ATLAS_BBOX_LAT

public static final float ATLAS_BBOX_LAT

Dimensions used for Talairach view clipping box - lateral.

See Also:

• Constant Field Values

ATLAS_BBOX_ANT

public static final float ATLAS_BBOX_ANT

Dimensions used for Talairach view clipping box - anterior.

See Also:

• Constant Field Values

ATLAS_BBOX_POS

public static final float ATLAS_BBOX_POS

Dimensions used for Talairach view clipping box - posterior.

See Also:

• Constant Field Values

ATLAS_BBOX_INF

public static final float ATLAS_BBOX_INF

Dimensions used for Talairach view clipping box - inferior.

See Also:

• Constant Field Values

ATLAS_BBOX_SUP

public static final float ATLAS_BBOX_SUP

Dimensions used for Talairach view clipping box - superior.

See Also:

• Constant Field Values

ATLAS_BBOX_INF_NEW

public static final float ATLAS_BBOX_INF_NEW

Dimensions used for Talairach view clipping box - inferior new. 3/06/96: extra 10 mm for cerebellum .

See Also:

• Constant Field Values

ATLAS_AC_TO_LAT

public static final float ATLAS_AC_TO_LAT

Dimensions used for Talairach coordinates - lateral.

See Also:

• Constant Field Values

ATLAS_AC_TO_ANT

public static final float ATLAS_AC_TO_ANT

Dimensions used for Talairach coordinates - anterior.

See Also:

• Constant Field Values

ATLAS_PC_TO_POS

public static final float ATLAS_PC_TO_POS

Dimensions used for Talairach coordinates - posterior.

See Also:

• Constant Field Values

ATLAS_AC_TO_INF

public static final float ATLAS_AC_TO_INF

Dimensions used for Talairach coordinates - inferior.

See Also:

• Constant Field Values

ATLAS_AC_TO_SUP

public static final float ATLAS_AC_TO_SUP

Dimensions used for Talairach coordinates - superior.

See Also:

• Constant Field Values

ATLAS_AC_TO_PC

public static final float ATLAS_AC_TO_PC

AC to PC dimension.

See Also:

• Constant Field Values

AXIAL_A

public static final int AXIAL_A

DOCUMENT ME!

See Also:

• Constant Field Values

SAGITTAL_A

public static final int SAGITTAL_A

DOCUMENT ME!

See Also:

• Constant Field Values

CORONAL_A

public static final int CORONAL_A

DOCUMENT ME!

See Also:

• Constant Field Values

AXIAL_AB

public static final int AXIAL_AB

DOCUMENT ME!

See Also:

• Constant Field Values

SAGITTAL_AB

public static final int SAGITTAL_AB

DOCUMENT ME!

See Also:

• Constant Field Values

CORONAL_AB

public static final int CORONAL_AB

DOCUMENT ME!

See Also:

• Constant Field Values

AXIAL_B

public static final int AXIAL_B

DOCUMENT ME!

See Also:

• Constant Field Values

SAGITTAL_B

public static final int SAGITTAL_B

DOCUMENT ME!

See Also:

• Constant Field Values

CORONAL_B

public static final int CORONAL_B

DOCUMENT ME!

See Also:

• Constant Field Values

NUM_INVISIBLE_BUTTONS

protected static final int NUM_INVISIBLE_BUTTONS

We want to be able to toggle the bounding box button, but don't want it to be part of any other button group. The button group can't be programmatically set to "unselected" after its already been selected. To emulate this behavior, I'm adding an invisible button to the button group that will be "toggled" on and off when the user clicks the bounding box button. These two buttons will act as the button group.

See Also:

• Constant Field Values

MAX_INITIAL_TRI_IMAGES

public static final int MAX_INITIAL_TRI_IMAGES

Maximum number of initial tri-images!

See Also:

• Constant Field Values

OLD_LAYOUT

protected static final String OLD_LAYOUT

A constant for which to test in the actionPerformed.

See Also:

• Constant Field Values

PANEL_PLUGIN

protected static final String PANEL_PLUGIN

A constant for which to test in the actionPerformed.

See Also:

• Constant Field Values

DEFAULT_OPTIMAL_ZOOM

protected static final int DEFAULT_OPTIMAL_ZOOM

Constant to determine how many pixels would be optimal for the image to be initially zoomed to.

See Also:

• Constant Field Values

scrollPane

public JScrollPane[] scrollPane

DOCUMENT ME!

triImage

public ViewJComponentTriImage[] triImage

DOCUMENT ME!

triImagePanel

public JPanel[] triImagePanel

DOCUMENT ME!

btnInvisible

protected JToggleButton[] btnInvisible

DOCUMENT ME!

bufferFactor

protected int bufferFactor

1 for black and white, 4 for color.

centerButtonSelected

protected boolean centerButtonSelected

DOCUMENT ME!

chkShowTalairachGrid

protected JCheckBox chkShowTalairachGrid

"Show talairach grid" checkbox.

chkShowTalairachGridMarkers

protected JCheckBox chkShowTalairachGridMarkers

"Show talairach gridmarkers" checkbox.

color

protected Color color

Color of the paint.

colorChooser

protected ViewJColorChooser colorChooser

Color chooser to use when selecting paint color.

colorPaintButton

protected JButton colorPaintButton

Button for changing the color of the paint.

controls

protected ViewControlsImage controls

Used to obtain initial paint opacity and color.

coordinateListeners

protected Vector<CoordinateChangeListener> coordinateListeners

A list of CoordinateChangeListeners who want to know about changes to the coordinate currently pointed to by the tri-image frame's crosshairs.

crosshairSpinner

protected JSpinner crosshairSpinner

Spinner component for the crosshair gap size.

currentAbsolutePositionLabels

protected Point3D currentAbsolutePositionLabels

The current values of the absolute position labels.

defaultPreferredHeight

protected int defaultPreferredHeight

The default hight of the window, if it cannot be calculated.

extents

protected int[] extents

Extents of image.

imageToolBar

protected JToolBar imageToolBar

Image control toolbar.

VOIGroup

protected ButtonGroup VOIGroup

imageAlignToolBar

protected JToolBar imageAlignToolBar

intensitySpinner

protected JSpinner intensitySpinner

Spinner component for the paint intensity.

talairachPanel

protected JPanel talairachPanel

Panel for Talairach position display.

viewPanel

protected JPanel viewPanel

Panel for switching between radiological and neurological viewing conventions.

labelXTal

protected JTextField labelXTal

Label the Talairach position x value in the image volume.

labelYTal

protected JTextField labelYTal

Label the Talairach position y value in the image volume.

labelZTal

protected JTextField labelZTal

Label the Talairach position z value in the image volume.

xTalLabel

protected JLabel xTalLabel

yTalLabel

protected JLabel yTalLabel

zTalLabel

protected JLabel zTalLabel

menuObj

protected ViewMenuBuilder menuObj

Menu items storage.

oldLayout

protected boolean oldLayout

DOCUMENT ME!

OPACITY

protected float OPACITY

Opacity of paint.

paintBrushNames

protected String[] paintBrushNames

List of built-in and user-defined paint brushes.

paintToolBar

protected JToolBar paintToolBar

Paint tool bar.

borderPaintButton

public JToggleButton borderPaintButton

bogusBorderPaintButton

public JToggleButton bogusBorderPaintButton

panelActiveImage

protected JPanel panelActiveImage

Panel for deciding which image is active; appears when 2 images are loaded.

panelToolbar

protected JPanel panelToolbar

Panel that holds the toolbars.

panelToolBarGBC

protected GridBagConstraints panelToolBarGBC

parentFrame

protected ViewJFrameImage parentFrame

Reference to the parent window.

pluginPanel

protected Component pluginPanel

Reference to the plug-in panel in the 2x2 (old) layout.

radioImageA

protected JRadioButton radioImageA

Radio button for selecting image A as active.

radioImageB

protected JRadioButton radioImageB

Radio button for selecting image B as active.

radioImageBoth

protected JRadioButton radioImageBoth

Radio button for selecting both images as active.

resols

protected float[] resols

Resolutions of image.

scrollOriginalCrosshair

protected boolean scrollOriginalCrosshair

Flag telling the crosshair movement to update slice in original image frame.

showTalairachGrid

protected boolean showTalairachGrid

Flag for showing the Talairach grid on the component images.

showTalairachPosition

protected boolean showTalairachPosition

Flag for showing the Talairach position on the component images.

tDim

protected int tDim

Time dimension of the original image.

tImageSlider

protected JSlider tImageSlider

Slider for 4D images, time dimension.

traverseButton

protected JToggleButton traverseButton

Button for traversing the images.

tSlice

protected int tSlice

Time slice that this image is on.

units

protected int[] units

Units of image - mm, inches, etc.

useInfNew

protected boolean useInfNew

if true use cerebellum-adjusted static variable.

volumeCenter

protected int[] volumeCenter

The point to become center of transformed image.

volumePositionFrame

protected VolumePositionFrame volumePositionFrame

Reference to the volume coordinate frame.

volumePositionPanel

protected JPanel volumePositionPanel

Reference to the volume coordinate panel when it is in the plug-in position.

zoom

protected float zoom

Magnification for image.

addPointToggleButton

protected JToggleButton addPointToggleButton

Toggle buttons for voi/points

dropperPaintToggleButton

protected JToggleButton dropperPaintToggleButton

Toggle buttons for voi/points

paintCanToggleButton

protected JToggleButton paintCanToggleButton

Toggle buttons for voi/points

indivMagButton

protected JToggleButton indivMagButton

refs to indiviadual frame zooming in and out buttons.

indivMinButton

protected JToggleButton indivMinButton

refs to indiviadual frame zooming in and out buttons.

leastSquaresButton

protected JButton leastSquaresButton

DOCUMENT ME!

magButton

protected JButton magButton

refs to the magnify and minimize button.*

minButton

protected JButton minButton

refs to the magnify and minimize button.*

paintBox

protected JComboBox paintBox

Box holding the list of available paint brushes.

paintBrushLocked

private boolean paintBrushLocked

used with the above to say the paint brush has been changed, waiting to change back.

quickPaintBrushIndex

private int quickPaintBrushIndex

int used for quick-key painting for speedier paint brush access.

scrollButton

protected JCheckBox scrollButton

The button that indicates whether this triframe is linked with tri-frames of similar dimensionality.

spinnerDefaultValue

private double spinnerDefaultValue

Used to setup the paint spinner.

spinnerMin

private double spinnerMin

Used to setup the paint spinner.

spinnerMax

private double spinnerMax

Used to setup the paint spinner.

spinnerStep

private double spinnerStep

Used to setup the paint spinner.

toolbarBuilder

protected ViewToolBarBuilder toolbarBuilder

Toolbar builder reference.

tpSplineButton

protected JButton tpSplineButton

DOCUMENT ME!

volumeBounds

private CubeBounds volumeBounds

Volume Boundary may be changed for cropping the volume.

voiMenu

protected JMenu voiMenu

Menu displaying VOI options

voiManager

protected VOIManagerInterface voiManager

The VOI managers for each triComponent

iTalLabel

protected JLabel iTalLabel

talaraich intensity label*

tTalVoxLabel

public JLabel tTalVoxLabel

talairach voxel label *

currentOrientation

private int currentOrientation

RGBTa

protected ModelRGB RGBTa

RGB tables for imageA and imageB

RGBTb

protected ModelRGB RGBTb

RGB tables for imageA and imageB

v

static int v

Constructor Details

ViewJFrameTriImage

public ViewJFrameTriImage(ModelImage _imageA,
 ModelImage _imageB)

Creates a JFrameBase without calling gui initialization, init() must be called after pre-processing has completed.

Parameters:

_imageA - First image to display

_imageB - Second loaded image

ViewJFrameTriImage

public ViewJFrameTriImage(ModelImage _imageA,
 ModelLUT LUTa,
 ModelImage _imageB,
 ModelLUT LUTb,
 ViewControlsImage controls,
 ViewJFrameImage parent)

Make a frame and puts an image component into it.

Parameters:

_imageA - First image to display

LUTa - LUT of the imageA (if null grayscale LUT is constructed)

_imageB - Second loaded image

LUTb - LUT of the imageB

controls - controls used to obtain initial OPACITY and color

parent - main user interface frame.

ViewJFrameTriImage

public ViewJFrameTriImage(ModelImage _imageA,
 ModelLUT LUTa,
 ModelRGB RGBTa,
 ModelImage _imageB,
 ModelLUT LUTb,
 ModelRGB RGBTb,
 ViewControlsImage controls,
 ViewJFrameImage parent)

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Calls various methods depending on the action.

Specified by:

actionPerformed in interface ActionListener

Specified by:

actionPerformed in class ViewJFrameBase

Parameters:

event - event that triggered function

scannerRASGoTo

private void scannerRASGoTo()

Method that goes to the ras coordinate that is entered

scannerLPSGoTo

private void scannerLPSGoTo()

Method that goes to the lps coordinate that is entered

absoluteGoTo

public void absoluteGoTo()

Method that goes to the absolute voxel coordinate that is entered

talairachGoTo

private void talairachGoTo()

Method that goes to the talairach coordinate that is entered

addCoordinateChangeListener

public void addCoordinateChangeListener(CoordinateChangeListener listener)

Add someone who wants to be notified about crosshair coordinate changes.

Parameters:

listener - the listener

addTabbedPane

public void addTabbedPane()

Called when the volumePositionFrame closes, the volumePositionPanel is again displayed in the window:.

closeImageB

public void closeImageB()

Closes the image B and performs cleanup.

Overrides:

closeImageB in class ViewJFrameBase

disposeLocal

public void disposeLocal()

Should be called when window is closing to perform cleanup.

enableBoth

public void enableBoth(boolean bEnable)

getAxialComponentSlice

public int getAxialComponentSlice()

Gets the axial position of the slice.

Returns:

The axial location in the slice.

getBoundedVolume

public CubeBounds getBoundedVolume()

Returns the crop bounding volume as a CubeBounds object.

Returns:

volumeBounds the crop volume

getCenter

public int[] getCenter()

Sets the x coordinate of the point to be the center of the transformed image.

Returns:

DOCUMENT ME!

getCenterPt

public WildMagic.LibFoundation.Mathematics.Vector3f getCenterPt()

Specified by:

getCenterPt in interface VOIManagerInterfaceListener

getControls

public ViewControlsImage getControls()

Gets reference to control widgets for frame.

Specified by:

getControls in class ViewJFrameBase

Returns:

controls

getCoronalComponentSlice

public int getCoronalComponentSlice()

Gets the y position of the slice.

Returns:

The y location in the slice.

getCurrentPositionLabels

public Point3D getCurrentPositionLabels()

Get the last point that the position labels got set to.

Returns:

the current values for the absolute position labels

getImageA

public ModelImage getImageA()

Accessor that returns the reference to imageA.

Specified by:

getImageA in class ViewJFrameBase

Returns:

image

getImageB

public ModelImage getImageB()

Accessor that returns the reference to imageB.

Specified by:

getImageB in class ViewJFrameBase

Returns:

imageB

getLinkedTriFrame

public ViewJFrameTriImage getLinkedTriFrame()

Gets the linked ViewJFrameTriImage.

Returns:

linkedFrame

getParentFrame

public ViewJFrameImage getParentFrame()

Returns a reference to the ViewJFrameImage object that is the parent of this frame.

Returns:

a reference to the ViewJFrameImage object that is the parent of this frame

getSagittalComponentSlice

public int getSagittalComponentSlice()

Gets the x position of the slice.

Returns:

The x location in the slice.

getSelectedImage

public int getSelectedImage()

Returns an integer which represents the image that is selected. The possible values are ViewJComponentBase.BOTH, ViewJComponentBase.IMAGE_A, ViewJComponentBase.IMAGE_B

Returns:

int the image that is selected in the active image panel

getTriImage

public ViewJComponentTriImage getTriImage(int index)

Returns a reference to one of the component tri-image components.

Parameters:

index - int the index of the component tri-image to get. Possibilies are AXIAL_A, AXIAL_B, AXIAL_AB, CORONAL_A, CORONAL_B, CORONAL_AB, SAGITTAL_A, SAGITTAL_B, SAGITTAL_AB

Returns:

ViewJComponentTriImage

getXSliceHairColor

public Color getXSliceHairColor()

Gets the color of the X slice crosshair.

Returns:

Color the color of the X slice crosshair

getYSliceHairColor

public Color getYSliceHairColor()

Gets the color of the Y slice crosshair.

Returns:

Color the color of the Y slice crosshair

getZSliceHairColor

public Color getZSliceHairColor()

Gets the color of the Z slice crosshair.

Returns:

Color the color of the Z slice crosshair

isFocusable

public boolean isFocusable()

Always returns true.

Overrides:

isFocusable in class Component

Returns:

boolean always returns true

itemStateChanged

public void itemStateChanged(ItemEvent event)

Does setBorderPainted for the appropriate button.

Specified by:

itemStateChanged in interface ItemListener

Parameters:

event - Event that triggered this function

keyPressed

public void keyPressed(KeyEvent e)

keyPressed event method for KeyListener.

Specified by:

keyPressed in interface KeyListener

Parameters:

e - KeyEvent

keyReleased

public void keyReleased(KeyEvent e)

keyReleased event method for KeyListener.

Specified by:

keyReleased in interface KeyListener

Parameters:

e - KeyEvent

keyTyped

public void keyTyped(KeyEvent e)

DOCUMENT ME!

Specified by:

keyTyped in interface KeyListener

Parameters:

e - DOCUMENT ME!

mouseClicked

public void mouseClicked(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseClicked in interface MouseListener

Parameters:

event - DOCUMENT ME!

mouseEntered

public void mouseEntered(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseEntered in interface MouseListener

Parameters:

event - DOCUMENT ME!

mouseExited

public void mouseExited(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseExited in interface MouseListener

Parameters:

event - DOCUMENT ME!

mousePressed

public void mousePressed(MouseEvent event)

DOCUMENT ME!

Specified by:

mousePressed in interface MouseListener

Parameters:

event - DOCUMENT ME!

mouseReleased

public void mouseReleased(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseReleased in interface MouseListener

Parameters:

event - DOCUMENT ME!

removeControls

public void removeControls()

Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls. Currently unused.

Specified by:

removeControls in class ViewJFrameBase

removeCoordinateChangeListener

public void removeCoordinateChangeListener(CoordinateChangeListener listener)

Remove a coordinate change listener from this frame's list.

Parameters:

listener - a coordinate change listener (hopefully in the list..)

setActiveImage

public void setActiveImage(int active)

Set the active image for drawing VOIs. VOIs are only drawn in the active image. In addition, algorithms are executed on the active window.

Specified by:

setActiveImage in interface VOIManagerInterfaceListener

Specified by:

setActiveImage in class ViewJFrameBase

Parameters:

active - ViewJComponentBase.IMAGE_A or ViewJComponentBase.IMAGE_B

setAlphaBlend

public void setAlphaBlend(int value)

Sets the alpha blending of parameter for two image displaying.

Specified by:

setAlphaBlend in class ViewJFrameBase

Parameters:

value - amount [0,100] that is the percentage of Image A to be displayed

setCenter

public void setCenter(int i,
 int j,
 int k)

sets the crosshair positions and slices for each of the triImages. The inputs are in FileCoordinates, and are passed to the triImages in FileCoordinates. Each triImage converts from FileCoordinates to the local PatientCoordinate space, based on the triImage orientation (FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL).

Parameters:

i - model space coordinate

j - model space coordinate

k - model space coordinate

setCenter

public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)

Specified by:

setCenter in interface VOIManagerInterfaceListener

setCenter

public void setCenter(int i,
 int j,
 int k,
 boolean checkLinkedScroll)

sets the crosshair positions and slices for each of the triImages. The inputs are in FileCoordinates, and are passed to the triImages in FileCoordinates. Each triImage converts from FileCoordinates to the local PatientCoordinate space, based on the triImage orientation (FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL).

Parameters:

i - model space coordinate

j - model space coordinate

k - model space coordinate

checkLinkedScroll - (boolean telling whether to look for linked images to sync scroll... necessary to avoid infinite loop)

setControls

public void setControls()

Sets the menu and controls (i.e. toolbars) of the main frame! This puts the menus and controls needed to controls the operations of this frame. Different image frames have different menu and controls. Currently unused.

Specified by:

setControls in class ViewJFrameBase

setCrop

public void setCrop(WildMagic.LibFoundation.Mathematics.Vector3f lower,
 WildMagic.LibFoundation.Mathematics.Vector3f upper)

Sets the new crop volume in the ViewJComponentTriImage frames and sets the volumeBounds.

Parameters:

lower - the lower corner of the crop volume in File Coordinates

upper - the upper corner of the crop volume in File Coordinates

setDefault

public void setDefault()

Sets modes in all images to ViewJComponentBase.DEFAULT.

setEnabled

public void setEnabled(boolean flag)

Controls whether or not the images/VOIs of the frame can be modified.

Specified by:

setEnabled in class ViewJFrameBase

Parameters:

flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified

setImageA

public void setImageA(ModelImage image)

Changes imageA to a new model image reference. Swaps the references in the frame and all the component images.

Overrides:

setImageA in class ViewJFrameBase

Parameters:

image - the new image to use

setImageB

public void setImageB(ModelImage _imageB)

Accessor that sets the reference to imageB. Includes changing the frame's reference and the references the components keep.

Specified by:

setImageB in class ViewJFrameBase

Parameters:

_imageB - image to set the frame to

setImageB

public void setImageB(ModelImage _imageB,
 boolean disposeOldB)

Accessor that sets the reference to imageB. Includes changing the frame's reference and the references the components keep. Unlike setImageB(ModelImage) this method matches the functionality of setImageA(ModelImage)

Parameters:

_imageB - image to set the frame to

setImageSelectorPanelVisible

public void setImageSelectorPanelVisible(boolean visible)

this method either shows or hides the image selector panel, based on the value of the parameter.

Parameters:

visible - DOCUMENT ME!

setIntensityDropper

public void setIntensityDropper(float intensityDropper)

Sets paint intensity in axial image.

Parameters:

intensityDropper - the paint intensity value for the XY image

setIntensityPaintName

public void setIntensityPaintName(float intensityDropper)

Sets integer value on intensityPaintButton.

Parameters:

intensityDropper - the paint button intensity value to show

setLUTa

public void setLUTa(ModelLUT LUT)

Accessor that sets the LUT.

Overrides:

setLUTa in class ViewJFrameBase

Parameters:

LUT - the LUT

setLUTb

public void setLUTb(ModelLUT LUT)

Accessor that sets the LUT.

Overrides:

setLUTb in class ViewJFrameBase

Parameters:

LUT - the LUT

setPaintBitmapSwitch

public void setPaintBitmapSwitch(boolean paintBitmapSwitch)

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.

Specified by:

setPaintBitmapSwitch in class ViewJFrameBase

Parameters:

paintBitmapSwitch - if true don't do a getMask on the new actve image

setPaintColor

public void setPaintColor(Color color)

Sets the color of the paint.

Parameters:

color - Color the desired color of the paint

setPositionLabels

public void setPositionLabels(int x,
 int y,
 int z)

Sets the labels which show the absolute position within the image volume and the patient position.

Parameters:

x - the x volume coordinate

y - the y volume coordinate

z - the z volume coordinate

setRGBTA

public void setRGBTA(ModelRGB RGBT)

Sets the RGB table for ARGB image A.

Specified by:

setRGBTA in class ViewJFrameBase

Parameters:

RGBT - the new RGB transfer functions for imageA

setRGBTB

public void setRGBTB(ModelRGB RGBT)

Sets the RGB table for image B.

Specified by:

setRGBTB in class ViewJFrameBase

Parameters:

RGBT - the new RGB transfer functions for imageB

setLinkButtonSelected

public void setLinkButtonSelected(boolean selected)

Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true

setSlice

public void setSlice(int slice)

Does nothing.

Specified by:

setSlice in interface ViewImageUpdateInterface

Parameters:

slice - the slice to show

setSlices

public void setSlices(int x,
 int y,
 int z)

Sets the slice index for each plane in the frame and components. Should be zero indexed.

Parameters:

x - slice index in the patient

y - slice index in the patient

z - slice index in the patient

setSlicesFromFrame

public void setSlicesFromFrame(int x,
 int y,
 int z)

Called from the "normal" image component, sets the slices for the tri planar view to display. Parameters are in terms of the image volume and so must be converted.

Parameters:

x - X Slice of image.

y - Y Slice of image.

z - Z Slice of image.

setTimeSlice

public void setTimeSlice(int slice)

Sets the slice to be displayed and updates title frame.

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Parameters:

slice - indicates image time-slice (4th dimension) to be displayed

setTimeSlice

public void setTimeSlice(int slice,
 boolean checkedLinkedScroll)

Sets the slice to be displayed and updates title frame.

Parameters:

slice - indicates image time-slice (4th dimension) to be displayed

checkedLinkedScroll - whether corresponding tri-frames should also be scrolled

setTitle

public void setTitle()

Sets the title bar for the tri-image frame. Called for initialization and updating. Displays time series location for 4D volumes.

Specified by:

setTitle in class ViewJFrameBase

setTraverseButton

public void setTraverseButton()

Sets the traverse button to selected.

setVolumeCenter

public void setVolumeCenter(Point3D newVolumeCenter)

Sets the x coordinate of the point to be the center of the transformed image.

Parameters:

newVolumeCenter - The x coordinate of the center.

setVolumeCenter

public void setVolumeCenter(int x,
 int y,
 int z)

Sets the x coordinate of the point to be the center of the transformed image.

Parameters:

x - The x coordinate of the center.

y - DOCUMENT ME!

z - DOCUMENT ME!

setXSliceHairColor

public void setXSliceHairColor(Color c)

Sets the color of the X slice crosshairs.

Parameters:

c - Color the color to set the X slice to

setYSliceHairColor

public void setYSliceHairColor(Color c)

Sets the color of the Y slice crosshairs.

Parameters:

c - Color the color to set the Y slice to

setZSliceHairColor

public void setZSliceHairColor(Color c)

Sets the color of the Z slice crosshairs.

Parameters:

c - Color the color to set the Z slice to

stateChanged

public void stateChanged(ChangeEvent e)

Sets values based on knob along time slider.

Specified by:

stateChanged in interface ChangeListener

Overrides:

stateChanged in class ViewJFrameBase

Parameters:

e - Event that triggered this function

updateImageExtents

public boolean updateImageExtents()

Do nothing - required by ViewJFrameBase.

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Specified by:

updateImageExtents in class ViewJFrameBase

Returns:

always false

See Also:

• ViewImageUpdateInterface

updateImages

public boolean updateImages()

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(boolean forceShow)

This methods calls the componentImage's update method to redraw the screen. Without LUT changes.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

forceShow - forces show to reimport image and calc. java image

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(boolean forceShow,
 int interpMode)

This methods calls the componentImage's update method to redraw the screen. Without LUT changes.

Parameters:

forceShow - forces show to reimport image and calc. java image

interpMode -

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean forceShow,
 int interpMode)

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

forceShow - forces show to reimport image and calc. java image

interpMode - image interpolation method (Nearest or Smooth)

Returns:

boolean confirming successful update

updateImageSubset

public void updateImageSubset(ViewJComponentTriImage triImage)

DOCUMENT ME!

Parameters:

triImage - DOCUMENT ME!

windowClosing

public void windowClosing(WindowEvent event)

Closes window and disposes of frame and component.

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class ViewJFrameBase

Parameters:

event - Event that triggered function

windowOpened

public void windowOpened(WindowEvent event)

Description copied from class: ViewJFrameBase

Does nothing.

Specified by:

windowOpened in interface WindowListener

Overrides:

windowOpened in class ViewJFrameBase

Parameters:

event - the window event

buildActiveImagePanel

protected void buildActiveImagePanel()

Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.

buildDisabledTextButton

protected void buildDisabledTextButton(String text,
 String toolTip,
 String action,
 JToolBar toolbar)

Helper method to build a text button for the toolbar.

Parameters:

text - Text for button.

toolTip - Tool tip to be associated with button.

action - Action command for button.

toolbar - Tool bar to add this button to.

buildIconButton

protected void buildIconButton(String icon,
 String toolTip,
 String action,
 String iconroll,
 JToolBar toolbar)

Helper method to build an icon button for the toolbar.

Parameters:

icon - Name of icon for button.

toolTip - Tool tip to be associated with button.

action - Action command for button.

iconroll - Name of icon for rollover.

toolbar - Tool bar to add this button to.

buildMenu

protected JMenuBar buildMenu()

Builds menus for the tri-planar view.

Returns:

the tri-image frame menu bar

buildToolbarMenu

protected JMenu buildToolbarMenu(boolean showPaintToolbar)

buildNamedTextButton

protected JButton buildNamedTextButton(String text,
 String toolTip,
 String action,
 JToolBar toolbar)

Helper method to build a text button for the toolbar.

Parameters:

text - Text for button.

toolTip - Tool tip to be associated with button.

action - Action command for button.

toolbar - Tool bar to add this button to.

Returns:

the new named text button

buildProgressBar

protected void buildProgressBar(String imageName,
 String message,
 int start,
 int end)

Constructs progress bar.

Parameters:

imageName - The name of the image.

message - Message to be displayed in the frame

start - Start (typical = 0)

end - End (typical = 100)

buildTImageSliderLabels

protected Hashtable<Integer,JLabel> buildTImageSliderLabels(int min,
 int max)

Builds the slider labels for the time slider.

Parameters:

min - Min value of slider

max - Max value of slider.

Returns:

Slider labels hash.

buildToggleButton

protected void buildToggleButton(String icon,
 String toolTip,
 String action,
 String iconroll,
 ButtonGroup group,
 JToolBar toolbar)

Helper method to build a toggle button for the toolbar.

Parameters:

icon - Name of icon for button.

toolTip - Tool tip to be associated with button.

action - Action command for button.

iconroll - Name of icon for rollover.

group - Button group to add this toggle to.

toolbar - Tool bar to add this button to.

buildToggleButton

protected void buildToggleButton(String icon,
 String toolTip,
 String action,
 String iconroll,
 ButtonGroup group,
 JToolBar toolbar,
 boolean selected)

Helper method to build a toggle button for the toolbar.

Parameters:

icon - Name of icon for button.

toolTip - Tool tip to be associated with button.

action - Action command for button.

iconroll - Name of icon for rollover.

group - Button group to add this toggle to.

toolbar - Tool bar to add this button to.

selected - whether or not the button is initially selected

buildToolbars

protected void buildToolbars()

Builds the toolbars for the tri-planar view.

buildMagToolBar

protected JToolBar buildMagToolBar(int boxLayout)

Builds the image toolbar for zooming

Parameters:

boxLayout - the layout to apply

Returns:

imageToolBar

buildPaintToolBar

protected JToolBar buildPaintToolBar(int boxLayout)

Builds the paint toolbar

Parameters:

boxLayout - layout to apply

Returns:

the paintToolBar

buildImageAlignToolBar

protected void buildImageAlignToolBar()

buildTriImage

protected ViewJComponentTriImage buildTriImage(ModelImage imageA,
 ModelLUT lutA,
 ModelRGB RGBTa,
 ModelImage imageB,
 ModelLUT lutB,
 ModelRGB RGBTb,
 int orientation)

This method creates an image from the two ModelImage objects and ModelLUT objects passed as parameters.

Parameters:

imageA - ModelImage image A

lutA - ModelLUT image A's LUT

imageB - ModelImage image B

lutB - ModelLUT image B's LUT

orientation - the desired orientation of the result image

Returns:

ViewJComponentTriImage

buildVolumePositionPanel

protected void buildVolumePositionPanel()

Builds the volume position panel, which is the panel that sits in the plug-in area of the 2x2 tri-planar layout.

gettTalVoxLabel

public JLabel gettTalVoxLabel()

settTalVoxLabelText

public void settTalVoxLabelText(String text)

configureFrame

protected void configureFrame()

Constructs main frame structures for 3 images (image A only) or 9 images (image A and image B). Assumes imageA is not null. Builds the labels for the position frame. Adds the tri-images to this frame's layout.

doOldLayout

protected void doOldLayout()

This is an alternative layout arrangement. It is the original layout before the tri-planar and the dual tri-planar were merged into this class.

finalize

protected void finalize()
                 throws Throwable

DOCUMENT ME!

Overrides:

finalize in class ViewJFrameBase

Throws:

Throwable - DOCUMENT ME!

fireCoordinateChange

protected void fireCoordinateChange(int i,
 int j,
 int k)

Tell coordinate change listeners about a coordinate change (after changing the coordinate to image volume space from the tri-planar space).

Parameters:

i - the x coordinate

j - the y coordinate

k - the z coordinate

handleLeastSquares

protected void handleLeastSquares()

Method handles transformations for least squares algorithm in the tri-planar frame.

handlePluginPanelSelection

protected void handlePluginPanelSelection()

This method will load a plug-in into the plug-in area of the tri-planar frame. The plug-in must extend java.awt.Component, and take this class as the only parameter to its constructor.

handleTPSpline

protected void handleTPSpline()

DOCUMENT ME!

init

protected void init()

Initialize the the image orientations and call the frame layout method 'configureFrame()'.

initProgressBar

protected void initProgressBar()

Initializes the progress bar. Sets the location relative the middle the screen and makes it visible.

isMultipleSameSizeTriImages

protected boolean isMultipleSameSizeTriImages()

Helper method to establish if there are images of the same dimensionality so that a dialog can be created. Used by image calculator, concat, etc.

Returns:

true if there are images to operate on.

makeSeparator

protected JButton makeSeparator()

Makes a separator for the use in the toolbars.

Returns:

Separator for the toolbar.

setImageActiveInTriComponents

protected void setImageActiveInTriComponents(int activeImage)

DOCUMENT ME!

Parameters:

activeImage - DOCUMENT ME!

setTalairachPositionLabels

protected void setTalairachPositionLabels(int x,
 int y,
 int z)

Sets the labels that refer to Talairach position within the image.

Parameters:

x - Absolute x value in slice.

y - Absolute y value in slice.

z - Absolute z value in slice.

updateHistoLUTFrame

protected void updateHistoLUTFrame(int imageAorB)

Deprecated.

Displays histoLUT frame.

Parameters:

imageAorB - ViewJComponentBase.IMAGE_A or ViewJComponentBase.IMAGE_B

updateLayout

protected void updateLayout()

This method should be called whenever the layout of the tri-images has changed. For example, when image B is removed or added, this method should be called so that the frame can resize itself and properly layout the tri-image components.

updatePaint

protected void updatePaint(BitSet paintMap)

The purpose of this method is to set the paint bitmap so that it is the same for all 9 images. The reason it is here is because I couldn't find a way to automatically set the paint bitmap without calling this method. There was a problem because if you were painting in image A, image A/B would also get painted, but not image B. Paint in image A/B resulted in image A also being painted but not image B. Painting in image B resulting in image B being the only image affected. I thought this was weird so I created this method so that all images were painted equally. -- lorsino

Parameters:

paintMap - BitSet the paint bitset object to set the images to

adjustScrollbars

private void adjustScrollbars(int x,
 int y,
 JScrollPane scrollPane)

DOCUMENT ME!

Parameters:

x - DOCUMENT ME!

y - DOCUMENT ME!

scrollPane - DOCUMENT ME!

adjustScrollbars

private void adjustScrollbars(int frame,
 int x,
 int y)

This method adjust the scrollbars to area where user clicked when doing individual frame zooming in and out.

Parameters:

frame - DOCUMENT ME!

x - int

y - int

buildLabels

private void buildLabels()

Convenience method created to simplify configureFrame().

buildLUTs

protected void buildLUTs()

Convenience method created to simplify configureFrame().

cleanVolumePositionPanel

protected final void cleanVolumePositionPanel()

Clears the volumePositionPanel, so it can be recreated when the volumePositionFrame is closed:.

getOptimalZoom

protected float getOptimalZoom(int desiredWidth,
 int desiredHeight)

Calculates the optimal zoom value for an image based on the two parameters desiredWidth and desiredHeight. Since MIPAV doesn't officially support images with differing zoom values, the zoom value returned will be that value which, when applied to the image, will ensure the image size on screen is no more than both desiredWidth or desiredHeight

Parameters:

desiredWidth - int the ideal width for the image displayed on-screen

desiredHeight - int the idea height for the image displayed on-screen

Returns:

float the zoom value required to show the image on-screen at no more than desiredWidth and no more than desired height

setOldLayout

protected void setOldLayout(boolean bLayout)

Transition between the 2x2 window layout and 3x1 window layout:

Parameters:

bLayout - the new layout, = 2x2 layout when true and 3x1 when false

setSpinnerValues

private void setSpinnerValues(int type)

Sets the spinner values based on image type.

Parameters:

type - Image type (BYTE, FLOAT, ...)

setVolumeBounds

private void setVolumeBounds(WildMagic.LibFoundation.Mathematics.Vector3f lower,
 WildMagic.LibFoundation.Mathematics.Vector3f upper)

Sets the CubeBounds data member volumeBounds to the crop volume defined by the lower and upper volume points. The CubeBounds are ordered low to high and are checked against the volume extents.

Parameters:

lower - the lower bound in File Coordinates

upper - the upper bound in File Coordinates

zoomInFrame

protected void zoomInFrame(int frame)

this method will zoom in a particular frame.

Parameters:

frame - frame the frame number

zoomOutFrame

protected void zoomOutFrame(int frame)

this method will zoom out a particular frame.

Parameters:

frame - frame the frame number

initVOI

protected void initVOI()

Initialize the 3D VOI interface.

getFrame

public JFrame getFrame()

Specified by:

getFrame in interface VOIManagerInterfaceListener

PointerActive

public void PointerActive(boolean bActive)

Specified by:

PointerActive in interface VOIManagerInterfaceListener

PropDown

public WildMagic.LibFoundation.Mathematics.Vector3f PropDown(int iActive)

Specified by:

PropDown in interface VOIManagerInterfaceListener

PropUp

public WildMagic.LibFoundation.Mathematics.Vector3f PropUp(int iActive)

Specified by:

PropUp in interface VOIManagerInterfaceListener

create3DVOI

public void create3DVOI(boolean bIntersection)

Specified by:

create3DVOI in interface VOIManagerInterfaceListener

setCursor

public void setCursor(Cursor kCursor)

Specified by:

setCursor in interface VOIManagerInterfaceListener

Overrides:

setCursor in class Window

getActiveImage

public ModelImage getActiveImage()

Specified by:

getActiveImage in interface VOIManagerInterfaceListener

setModified

public void setModified()

Specified by:

setModified in interface VOIManagerInterfaceListener

updateData

public void updateData()

Specified by:

updateData in interface VOIManagerInterfaceListener

setActiveImage

public void setActiveImage(ModelImage kImage)

Specified by:

setActiveImage in interface VOIManagerInterfaceListener

getActiveLUT

public ModelLUT getActiveLUT()

Specified by:

getActiveLUT in interface VOIManagerInterfaceListener

getActiveRGB

public ModelRGB getActiveRGB()

Specified by:

getActiveRGB in interface VOIManagerInterfaceListener

getVOIManager

public VOIManagerInterface getVOIManager()

Specified by:

getVOIManager in interface VOIManagerInterfaceListener

setPaintMask

public void setPaintMask(BitSet mask)

Specified by:

setPaintMask in interface VOIManagerInterfaceListener

paintToShortMask

public void paintToShortMask()

Specified by:

paintToShortMask in interface VOIManagerInterfaceListener

paintToUbyteMask

public void paintToUbyteMask()

Specified by:

paintToUbyteMask in interface VOIManagerInterfaceListener

maskToPaint

public void maskToPaint()

Specified by:

maskToPaint in interface VOIManagerInterfaceListener

setCurrentOrientation

public void setCurrentOrientation(int currentOrientation)

getCurrentOrientation

public int getCurrentOrientation()

addSphereVOIs

public void addSphereVOIs(VOI annotations)

Specified by:

addSphereVOIs in interface VOIManagerInterfaceListener