Package gov.nih.mipav.model.algorithms

Class AlgorithmIteratedBlindDeconvolution

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmIteratedBlindDeconvolution
extends AlgorithmBase

DOCUMENT ME!

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
(package private) int	arrayLength	DOCUMENT ME!
(package private) ModelImage	blurredImageSpectrum	DOCUMENT ME!
(package private) float[]	blurredReals	DOCUMENT ME!
(package private) float[]	blurredSpectrumImags	DOCUMENT ME!
(package private) float[]	blurredSpectrumReals	DOCUMENT ME!
(package private) AlgorithmFFT	estimatedFFT	DOCUMENT ME!
(package private) AlgorithmFFT	estimatedIFFT	DOCUMENT ME!
(package private) ModelImage	estimatedImage	DOCUMENT ME!
(package private) ModelImage	estimatedImageSpectrum	DOCUMENT ME!
(package private) float[]	estimatedReals	DOCUMENT ME!
(package private) float[]	estimatedSpectrumImags	DOCUMENT ME!
(package private) float[]	estimatedSpectrumReals	DOCUMENT ME!
private ModelImage	inImage	DOCUMENT ME!
private ModelImage	outImage	DOCUMENT ME!
(package private) AlgorithmFFT	psfFFT	DOCUMENT ME!
(package private) AlgorithmFFT	psfIFFT	DOCUMENT ME!
private ModelImage	psfImage	DOCUMENT ME!
(package private) ModelImage	psfImageSpectrum	DOCUMENT ME!
(package private) float[]	psfReals	DOCUMENT ME!
(package private) float[]	psfSpectrumImags	DOCUMENT ME!
(package private) float[]	psfSpectrumReals	DOCUMENT ME!
(package private) float[]	tmpArray	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmIteratedBlindDeconvolution(ModelImage destImg, ModelImage srcImg, ModelImage psfImg)	Creates a new AlgorithmIteratedBlindDeconvolution object.

Method Summary

Modifier and Type	Method	Description
void	disposeLocal()	Dispose of local variables that may be taking up lots of room.
void	finalize()	Prepares this class for destruction.
private void	initAlgorithm()	All of this stuff was being done in the constructor...why?
private void	run2D()	DOCUMENT ME!
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

arrayLength

int arrayLength

DOCUMENT ME!

blurredImageSpectrum

ModelImage blurredImageSpectrum

DOCUMENT ME!

blurredReals

float[] blurredReals

DOCUMENT ME!

blurredSpectrumImags

float[] blurredSpectrumImags

DOCUMENT ME!

blurredSpectrumReals

float[] blurredSpectrumReals

DOCUMENT ME!

estimatedFFT

AlgorithmFFT estimatedFFT

DOCUMENT ME!

estimatedIFFT

AlgorithmFFT estimatedIFFT

DOCUMENT ME!

psfIFFT

AlgorithmFFT psfIFFT

DOCUMENT ME!

psfFFT

AlgorithmFFT psfFFT

DOCUMENT ME!

estimatedImage

ModelImage estimatedImage

DOCUMENT ME!

estimatedImageSpectrum

ModelImage estimatedImageSpectrum

DOCUMENT ME!

estimatedReals

float[] estimatedReals

DOCUMENT ME!

estimatedSpectrumImags

float[] estimatedSpectrumImags

DOCUMENT ME!

estimatedSpectrumReals

float[] estimatedSpectrumReals

DOCUMENT ME!

psfImageSpectrum

ModelImage psfImageSpectrum

DOCUMENT ME!

psfReals

float[] psfReals

DOCUMENT ME!

psfSpectrumImags

float[] psfSpectrumImags

DOCUMENT ME!

psfSpectrumReals

float[] psfSpectrumReals

DOCUMENT ME!

tmpArray

float[] tmpArray

DOCUMENT ME!

inImage

private ModelImage inImage

DOCUMENT ME!

outImage

private ModelImage outImage

DOCUMENT ME!

psfImage

private ModelImage psfImage

DOCUMENT ME!

Constructor Detail

AlgorithmIteratedBlindDeconvolution

public AlgorithmIteratedBlindDeconvolution(ModelImage destImg,
                                           ModelImage srcImg,
                                           ModelImage psfImg)

Creates a new AlgorithmIteratedBlindDeconvolution object.

Parameters:

destImg - DOCUMENT ME!

srcImg - DOCUMENT ME!

psfImg - DOCUMENT ME!

Method Detail

disposeLocal

public void disposeLocal()

Dispose of local variables that may be taking up lots of room.

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

initAlgorithm

private void initAlgorithm()

All of this stuff was being done in the constructor...why? Shoved it in here to have progress bar continuity (also we shouldn't be running other algorithms within a constructor)

run2D

private void run2D()

DOCUMENT ME!

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase