Package gov.nih.mipav.model.algorithms

Class AlgorithmFRAP.FitSingleExponentialNoWholeModel

java.lang.Object

gov.nih.mipav.model.algorithms.NL2sol

gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel

Enclosing class:

AlgorithmFRAP

class AlgorithmFRAP.FitSingleExponentialNoWholeModel
extends NL2sol

DOCUMENT ME!

Field Summary

Fields

Modifier and Type	Field	Description
(package private) int[]	iv
(package private) double[]	v
(package private) double[]	x
private double[]	xData
private float[]	yData

Constructor Summary

Constructors

Constructor	Description
FitSingleExponentialNoWholeModel(int nPoints, double[] xData, float[] yData, double[] x, int[] iv, double[] v, boolean useAnalyticJacobian)	Creates a new FitSingleExponentialNoWholeModel object.

Method Summary

Modifier and Type	Method	Description
void	calcj(int meqn, int nvar, double[] x, int nf, double[][] jac, int[] uiparm, double[] urparm)
void	calcr(int meqn, int nvar, double[] x, int[] nf, double[] r, int[] uiparm, double[] urparm)	Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).
void	driver()	Starts the analysis.
void	dumpResults()	Display results of displaying exponential fitting parameters in the case of no whole organ normalization.

Methods inherited from class gov.nih.mipav.model.algorithms.NL2sol

getChiSquared, getIterations, nl2sno, nl2sol, reldst, statusMessageNL2sol

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

iv

int[] iv

v

double[] v

x

double[] x

xData

private double[] xData

yData

private float[] yData

Constructor Detail

FitSingleExponentialNoWholeModel

public FitSingleExponentialNoWholeModel(int nPoints,
                                        double[] xData,
                                        float[] yData,
                                        double[] x,
                                        int[] iv,
                                        double[] v,
                                        boolean useAnalyticJacobian)

Creates a new FitSingleExponentialNoWholeModel object.

Parameters:

nPoints - DOCUMENT ME!

xData -

yData - DOCUMENT ME!

x - DOCUMENT ME!

iv -

v -

useAnalyticJacobian -

Method Detail

driver

public void driver()

Starts the analysis.

Overrides:

driver in class NL2sol

dumpResults

public void dumpResults()

Display results of displaying exponential fitting parameters in the case of no whole organ normalization.

calcj

public void calcj(int meqn,
                  int nvar,
                  double[] x,
                  int nf,
                  double[][] jac,
                  int[] uiparm,
                  double[] urparm)

Specified by:

calcj in class NL2sol

calcr

public void calcr(int meqn,
                  int nvar,
                  double[] x,
                  int[] nf,
                  double[] r,
                  int[] uiparm,
                  double[] urparm)

Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).

Specified by:

calcr in class NL2sol