Package gov.nih.mipav.model.algorithms

Class AlgorithmFRAP.FitSingleExponentialNoWholeModel

java.lang.Object
gov.nih.mipav.model.algorithms.NL2sol
gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel
Enclosing class:
AlgorithmFRAP
class AlgorithmFRAP.FitSingleExponentialNoWholeModel extends NL2sol
DOCUMENT ME!

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    (package private) int[]
    iv
     
    (package private) double[]
    v
     
    (package private) double[]
    x
     
    private double[]
    xData
     
    private float[]
    yData
     

  • Constructor Summary

    Constructors
    Constructor
    Description
    FitSingleExponentialNoWholeModel(int nPoints, double[] xData, float[] yData, double[] x, int[] iv, double[] v, boolean useAnalyticJacobian)
    Creates a new FitSingleExponentialNoWholeModel object.

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    calcj(int meqn, int nvar, double[] x, int nf, double[][] jac, int[] uiparm, double[] urparm)
     
    void
    calcr(int meqn, int nvar, double[] x, int[] nf, double[] r, int[] uiparm, double[] urparm)
    Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).
    void
    driver()
    Starts the analysis.
    void
    dumpResults()
    Display results of displaying exponential fitting parameters in the case of no whole organ normalization.

    Methods inherited from class gov.nih.mipav.model.algorithms.NL2sol

    getChiSquared, getIterations, nl2sno, nl2sol, reldst, statusMessageNL2sol

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Field Details

    • iv

      int[] iv

    • v

      double[] v

    • x

      double[] x

    • xData

      private double[] xData

    • yData

      private float[] yData

  • Constructor Details

    • FitSingleExponentialNoWholeModel

      public FitSingleExponentialNoWholeModel(int nPoints, double[] xData, float[] yData, double[] x, int[] iv, double[] v, boolean useAnalyticJacobian)
      Creates a new FitSingleExponentialNoWholeModel object.
      Parameters:
      nPoints - DOCUMENT ME!
      xData -
      yData - DOCUMENT ME!
      x - DOCUMENT ME!
      iv -
      v -
      useAnalyticJacobian -

  • Method Details

    • driver

      public void driver()
      Starts the analysis.
      Overrides:
      driver in class NL2sol

    • dumpResults

      public void dumpResults()
      Display results of displaying exponential fitting parameters in the case of no whole organ normalization.

    • calcj

      public void calcj(int meqn, int nvar, double[] x, int nf, double[][] jac, int[] uiparm, double[] urparm)
      Specified by:
      calcj in class NL2sol

    • calcr

      public void calcr(int meqn, int nvar, double[] x, int[] nf, double[] r, int[] uiparm, double[] urparm)
      Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).
      Specified by:
      calcr in class NL2sol