java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogPointArea

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogPointArea
extends JDialogScriptableBase
implements AlgorithmInterface
```
Dialog that will call AlgorithmPointArea in order to calculate the average intensity through a volume around an area with a given size (x by y) at a given point. The results are then graphed.

Version:

1.0

Author:

ben link

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`class`	`JDialogPointArea.JTextFieldFilter`	Filter that allows only integers or floating point numbers into a textfield while monitoring the numbers themselves in order to activate/deactivate related JCheckboxes.
`protected class`	`JDialogPointArea.UpdateYSpaceAction`	Make the x and y space bounds match if the constrain checkbox is selected.

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`(package private) float[]`	`averageIntensities`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`constrainBox`	DOCUMENT ME!
`private boolean`	`leftPad`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`leftPadBox`	DOCUMENT ME!
`private javax.swing.JTextField`	`locationField`	DOCUMENT ME!
`private AlgorithmPointArea`	`pointAlgo`	DOCUMENT ME!
`(package private) float[][]`	`rgbAverageIntensities`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private boolean`	`showGraph`	DOCUMENT ME!
`private ModelImage`	`srcImage`	DOCUMENT ME!
`private float`	`threshold`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`thresholdBox`	DOCUMENT ME!
`private javax.swing.JTextField`	`thresholdField`	DOCUMENT ME!
`private boolean`	`topPad`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`topPadBox`	DOCUMENT ME!
`private boolean`	`useThreshold`	DOCUMENT ME!
`private int`	`xLoc`	DOCUMENT ME!
`private javax.swing.JTextField`	`xSpaceField`	DOCUMENT ME!
`private int`	`xSpacing`	DOCUMENT ME!
`private int`	`yLoc`	DOCUMENT ME!
`private javax.swing.JTextField`	`ySpaceField`	DOCUMENT ME!
`private int`	`ySpacing`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogPointArea()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogPointArea(java.awt.Frame theParentFrame, ModelImage image, boolean showGraph)`	Constructor called from a ViewJFrameImage.
`JDialogPointArea(java.awt.Frame theParentFrame, ModelImage image, int xLoc, int yLoc, boolean showGraph)`	Constructor called from ViewJComponentEditImage (by clicking on a point and selecting from menu).

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	DOCUMENT ME!
`private void`	`init()`	Initializes GUI components and adds them to the dialog.
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setLeftPad(boolean leftPad)`	Accessor to set if padded with extra column on left.
`void`	`setShowGraph(boolean showGraph)`	Accessor to set showGraph.
`void`	`setThreshold(float threshold)`	Accessor to set threshold.
`void`	`setTopPad(boolean topPad)`	Accessor to set if padded with extra row on top.
`void`	`setUseThreshold(boolean useThreshold)`	Accessor to set if threshold is used.
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`void`	`setXLoc(int xLoc)`	Accessor to set x point location.
`void`	`setXSpacing(int xSpacing)`	Accessor to set x spacing around point.
`void`	`setYLoc(int yLoc)`	Accessor to set y point location.
`void`	`setYSpacing(int ySpacing)`	Accessor to set y spacing around point.
`private void`	`showIntensityGraph()`	Shows a graph of the average intensities through a volume (calculated from AlgorithmPointArea).
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - averageIntensities
```
float[] averageIntensities
```
    DOCUMENT ME!
  - rgbAverageIntensities
```
float[][] rgbAverageIntensities
```
    DOCUMENT ME!
  - constrainBox
```
private javax.swing.JCheckBox constrainBox
```
    DOCUMENT ME!
  - leftPad
```
private boolean leftPad
```
    DOCUMENT ME!
  - leftPadBox
```
private javax.swing.JCheckBox leftPadBox
```
    DOCUMENT ME!
  - locationField
```
private javax.swing.JTextField locationField
```
    DOCUMENT ME!
  - pointAlgo
```
private AlgorithmPointArea pointAlgo
```
    DOCUMENT ME!
  - showGraph
```
private boolean showGraph
```
    DOCUMENT ME!
  - srcImage
```
private ModelImage srcImage
```
    DOCUMENT ME!
  - threshold
```
private float threshold
```
    DOCUMENT ME!
  - thresholdBox
```
private javax.swing.JCheckBox thresholdBox
```
    DOCUMENT ME!
  - thresholdField
```
private javax.swing.JTextField thresholdField
```
    DOCUMENT ME!
  - topPad
```
private boolean topPad
```
    DOCUMENT ME!
  - topPadBox
```
private javax.swing.JCheckBox topPadBox
```
    DOCUMENT ME!
  - useThreshold
```
private boolean useThreshold
```
    DOCUMENT ME!
  - xLoc
```
private int xLoc
```
    DOCUMENT ME!
  - xSpaceField
```
private javax.swing.JTextField xSpaceField
```
    DOCUMENT ME!
  - xSpacing
```
private int xSpacing
```
    DOCUMENT ME!
  - yLoc
```
private int yLoc
```
    DOCUMENT ME!
  - ySpaceField
```
private javax.swing.JTextField ySpaceField
```
    DOCUMENT ME!
  - ySpacing
```
private int ySpacing
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogPointArea
```
public JDialogPointArea()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogPointArea
```
public JDialogPointArea(java.awt.Frame theParentFrame,
                        ModelImage image,
                        boolean showGraph)
```
    Constructor called from a ViewJFrameImage.
    
    Parameters:
    
    theParentFrame - Frame
    
    image - ModelImage
    
    showGraph - boolean
  - JDialogPointArea
```
public JDialogPointArea(java.awt.Frame theParentFrame,
                        ModelImage image,
                        int xLoc,
                        int yLoc,
                        boolean showGraph)
```
    Constructor called from ViewJComponentEditImage (by clicking on a point and selecting from menu).
    
    Parameters:
    
    theParentFrame - Frame
    
    image - ModelImage
    
    xLoc - int X location for point
    
    yLoc - int Y location for point
    
    showGraph - boolean whether or not to show the graph
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - event that triggers function
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - setLeftPad
```
public void setLeftPad(boolean leftPad)
```
    Accessor to set if padded with extra column on left.
    
    Parameters:
    
    leftPad - DOCUMENT ME!
  - setShowGraph
```
public void setShowGraph(boolean showGraph)
```
    Accessor to set showGraph.
    
    Parameters:
    
    showGraph - DOCUMENT ME!
  - setThreshold
```
public void setThreshold(float threshold)
```
    Accessor to set threshold.
    
    Parameters:
    
    threshold - DOCUMENT ME!
  - setTopPad
```
public void setTopPad(boolean topPad)
```
    Accessor to set if padded with extra row on top.
    
    Parameters:
    
    topPad - DOCUMENT ME!
  - setUseThreshold
```
public void setUseThreshold(boolean useThreshold)
```
    Accessor to set if threshold is used.
    
    Parameters:
    
    useThreshold - DOCUMENT ME!
  - setXLoc
```
public void setXLoc(int xLoc)
```
    Accessor to set x point location.
    
    Parameters:
    
    xLoc - DOCUMENT ME!
  - setXSpacing
```
public void setXSpacing(int xSpacing)
```
    Accessor to set x spacing around point.
    
    Parameters:
    
    xSpacing - DOCUMENT ME!
  - setYLoc
```
public void setYLoc(int yLoc)
```
    Accessor to set y point location.
    
    Parameters:
    
    yLoc - DOCUMENT ME!
  - setYSpacing
```
public void setYSpacing(int ySpacing)
```
    Accessor to set y spacing around point.
    
    Parameters:
    
    ySpacing - DOCUMENT ME!
  - callAlgorithm
```
protected void callAlgorithm()
```
    DOCUMENT ME!
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - init
```
private void init()
```
    Initializes GUI components and adds them to the dialog.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.
  - showIntensityGraph
```
private void showIntensityGraph()
```
    Shows a graph of the average intensities through a volume (calculated from AlgorithmPointArea).

Class JDialogPointArea

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

averageIntensities

rgbAverageIntensities

constrainBox

leftPad

leftPadBox

locationField

pointAlgo

showGraph

srcImage

threshold

thresholdBox

thresholdField

topPad

topPadBox

useThreshold

xLoc

xSpaceField

xSpacing

yLoc

ySpaceField

ySpacing

Constructor Detail

JDialogPointArea

JDialogPointArea

JDialogPointArea

Method Detail

actionPerformed

algorithmPerformed

setLeftPad

setShowGraph

setThreshold

setTopPad

setUseThreshold

setXLoc

setXSpacing

setYLoc

setYSpacing

callAlgorithm

setGUIFromParams

storeParamsFromGUI

init

setVariables

showIntensityGraph