Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmInsertSlice

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmInsertSlice
extends AlgorithmBase

Algorithm to insert a slice. Operates with sliceType either AVERAGE or BLANK or ORGIINAL. If AVERAGE, the inserted slice is set equal to the mean of the 2 surrounding slices unless it is an new start or end. A new start or end simply preserves the usual slice spacing. In BLANK mode a slice with all pixels zero is inserted. In original a 2D image of the same dimensions is inserted. Must insert black and white with black and white and color with color.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
static final int	ADJACENT_DOWN	Copy adjacent slice.
static final int	ADJACENT_UP	Copy adjacent slice.
static final int	AVERAGE	Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
static final int	BLANK	Blank slice type - the inserted slice is blank.
private ModelImage	insertedImage	Image inserted for slice type == ORIGINAL.
private int	insertSlice	Number of slice before which another slice is inserted.
private int	oldZdim	Original Z dimension of the image.
static final int	ORIGINAL	Original slice type - a 2D image is inserted.
private int	sliceArea	Area of a slice (Xdim * Ydim).
private int	sliceType	Insert an AVERAGE or BLANK image slice.
static final int	WEIGHTED_AVERAGE	Weighted average slice type.
private float	weightPrevious	For weighted averaging.
private int	Xdim	X dimension of the image.
private int	Ydim	Y dimension of the image.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmInsertSlice(ModelImage srcImage, ModelImage destImage, int insertSlice, int sliceType, ModelImage insertedImage)	Import source and destination images into the class.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares this class for destruction.
void	runAlgorithm()	Runs algorithm.
void	setWeightPrevious(float wp)	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

WEIGHTED_AVERAGE

public static final int WEIGHTED_AVERAGE

Weighted average slice type.

See Also:

• Constant Field Values

AVERAGE

public static final int AVERAGE

Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.

See Also:

• Constant Field Values

BLANK

public static final int BLANK

Blank slice type - the inserted slice is blank.

See Also:

• Constant Field Values

ORIGINAL

public static final int ORIGINAL

Original slice type - a 2D image is inserted.

See Also:

• Constant Field Values

ADJACENT_DOWN

public static final int ADJACENT_DOWN

Copy adjacent slice.

See Also:

• Constant Field Values

ADJACENT_UP

public static final int ADJACENT_UP

Copy adjacent slice.

See Also:

• Constant Field Values

insertedImage

private ModelImage insertedImage

Image inserted for slice type == ORIGINAL.

insertSlice

private int insertSlice

Number of slice before which another slice is inserted.

oldZdim

private int oldZdim

Original Z dimension of the image.

sliceArea

private int sliceArea

Area of a slice (Xdim * Ydim).

sliceType

private int sliceType

Insert an AVERAGE or BLANK image slice.

weightPrevious

private float weightPrevious

For weighted averaging.

Xdim

private int Xdim

X dimension of the image.

Ydim

private int Ydim

Y dimension of the image.

Constructor Details

AlgorithmInsertSlice

public AlgorithmInsertSlice(ModelImage srcImage,
 ModelImage destImage,
 int insertSlice,
 int sliceType,
 ModelImage insertedImage)

Import source and destination images into the class.

Parameters:

srcImage - source image (image to clip from)

destImage - destination image (image to paste to)

insertSlice - number of slice before which another slice is inserted

sliceType - AVERAGE or BLANK or ORIGINAL

insertedImage - image inserted for sliceType == ORIGINAL

Method Details

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Runs algorithm.

Specified by:

runAlgorithm in class AlgorithmBase

setWeightPrevious

public void setWeightPrevious(float wp)

DOCUMENT ME!

Parameters:

wp - DOCUMENT ME!