Package gov.nih.mipav.model.algorithms

Class AlgorithmHepticLagrangian

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmHepticLagrangian
extends AlgorithmBase

This is a polynomial p of degree 7 which interpolates a given function f at the points x(-3), x(-2), x(-1), x(0), x(1), x(2), x(3), and x(4) and is given by p(x) = sum from i = -3 to i = 4 of li(x)*f(xi), where li, i = -3,-2,-1,0,1,2,3,4 which are called the fundamental polynomials, are given by li(x) = product from k = -3 to k = 4 for k != i of (x - xk)/(xi - xk). li(-3) = (x - -2)/(-3 - -2) * (x - -1)/(-3 - -1) * (x - 0)/(-3 - 0) * (x-1)/(-3 - 1) * (x - 2)/(-3 - 2) * (x - 3)/(-3 - 3) * (x - 4)/(-3 - 4) = (x * (x*x - 1) * (x*x - 4) * (x - 3) * (4 - x))/5040 li(-2) = (x - -3)/(-2 - -3) * (x - -1)/(-2 - -1) * (x - 0)/(-2 - 0) * (x-1)/(-2 - 1) * (x-2)/(-2 - 2) * (x-3)/(-2 - 3) * (x - 4)/(-2 - 4) = (x * (x*x - 1) * (x - 2) * (x*x - 9) * (x - 4))/720 li(-1) = (x - -3)/(-1 - -3) * (x - -2)/(-1 - -2) * (x - 0)/(-1 - 0)* (x-1)/(-1 - 1) * (x - 2)/(-1 - 2) * (x - 3)/(-1 - 3) * (x - 4)/(-1 - 4) = (x * (x - 1) * (x*x- 4) * (x*x - 9) * (4 - x)))/240 li(0) = (x - -3)/(0 - -3) * (x - -2)/(0 - -2) * (x - -1)/(0 - -1) * (x - 1)/(0 - 1) * (x - 2)/(0 - 2) * (x - 3)/(0 - 3) * (x - 4)/(0 - 4) = ((x*x - 1) * (x*x - 4) * (x*x - 9) * (x - 4))/144 li(1) = (x - -3)/(1 - -3) * (x - -2)/(1 - -2) * (x - -1)/(1 - -1) * (x - 0)/(1 - 0) * (x - 2)/(1 - 2) * (x - 3)/(1 - 3) * (x - 4)/(1 - 4) = (x * (x+1) * (x*x - 4) * (x*x - 9) * (4 - x))/144 li(2) = (x - -3)/(2 - -3) * (x - -2)/(2 - -2) * (x - -1)/(2 - -1) * (x - 0)/(2 - 0) * (x - 1)/(2 - 1) * (x - 3)/(2 - 3) * (x - 4)/(2 - 4) = (x * (x*x - 1) * (x+2) * (x*x - 9) * (x - 4))/240 li(3) = (x - -3)/(3 - -3) *(x - -2)/(3 - -2) * (x - -1)/(3 - -1) * (x - 0)/(3 - 0) * (x - 1)/(3 - 1) * (x - 2)/(3 - 2) * (x - 4)/(3 - 4) = (x * (x*x - 1) * (x*x - 4) * (x + 3) * (4 - x))/720 li(4) = (x - -3)/(4 - -3) * (x - -2)/(4 - -2) * (x - -1)/(4 - -1) * (x - 0)/(4 - 0) * (x - 1)/(4 - 1) * (x - 2)/(4 - 2) * (x - 3)/(4 - 3) = (x * (x*x - 1) * (x*x - 4) * (x*x - 9))/5040

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private double	alphaMax	DOCUMENT ME!
private double	alphaMin	DOCUMENT ME!
private double	blueMax	DOCUMENT ME!
private double	blueMin	DOCUMENT ME!
private boolean	clip	DOCUMENT ME!
private double	greenMax	DOCUMENT ME!
private double	greenMin	DOCUMENT ME!
private double	inputMax	DOCUMENT ME!
private double	inputMin	DOCUMENT ME!
private double	redMax	DOCUMENT ME!
private double	redMin	DOCUMENT ME!
private int	sliceSize	DOCUMENT ME!
private double[]	volume	DOCUMENT ME!
private double[][]	wt	DOCUMENT ME!
private int	xD	DOCUMENT ME!
private int	xdim	DOCUMENT ME!
private int	yD	DOCUMENT ME!
private int	ydim	DOCUMENT ME!
private int	zD	DOCUMENT ME!
private int	zdim	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmHepticLagrangian()	AlgorithmHepticLagrangian - default constructor.

Method Summary

Modifier and Type	Method	Description
void	finalize()	finalize -
double	hepticLagrangian2D(double x, double y)	2D heptic Lagrangian function.
double[]	hepticLagrangian2DC(double x, double y)	2D heptic Lagrangian function for color.
double	hepticLagrangian3D(double x, double y, double z)	3D heptic Lagrangian function.
double[]	hepticLagrangian3DC(double x, double y, double z)	3D heptic Lagrangian function for color (3 channel images).
void	runAlgorithm()	run - default method that is not really appropiate for this class but must be defined because this class extends AlgorithmBase.
void	setup2DHepticLagrangian(double[] vol, int[] extents, boolean clip)	Setup 2D hepticLagrangian.
void	setup2DHepticLagrangianC(double[] vol, int[] extents, float argbMax, boolean clip)	Setup 2D hepticLagrangian for color.
void	setup3DHepticLagrangian(double[] vol, int[] extents, boolean clip)	Setup 3D heptic Lagrangian.
void	setup3DHepticLagrangianC(double[] vol, int[] extents, float argbMax, boolean clip)	Setup 3D heptic Lagrangian for color.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

alphaMax

private double alphaMax

DOCUMENT ME!

alphaMin

private double alphaMin

DOCUMENT ME!

blueMax

private double blueMax

DOCUMENT ME!

blueMin

private double blueMin

DOCUMENT ME!

clip

private boolean clip

DOCUMENT ME!

greenMax

private double greenMax

DOCUMENT ME!

greenMin

private double greenMin

DOCUMENT ME!

inputMax

private double inputMax

DOCUMENT ME!

inputMin

private double inputMin

DOCUMENT ME!

redMax

private double redMax

DOCUMENT ME!

redMin

private double redMin

DOCUMENT ME!

sliceSize

private int sliceSize

DOCUMENT ME!

volume

private double[] volume

DOCUMENT ME!

wt

private double[][] wt

DOCUMENT ME!

xD

private int xD

DOCUMENT ME!

yD

private int yD

DOCUMENT ME!

zD

private int zD

DOCUMENT ME!

xdim

private int xdim

DOCUMENT ME!

ydim

private int ydim

DOCUMENT ME!

zdim

private int zdim

DOCUMENT ME!

Constructor Detail

AlgorithmHepticLagrangian

public AlgorithmHepticLagrangian()

AlgorithmHepticLagrangian - default constructor.

Method Detail

finalize

public void finalize()

finalize -

Overrides:

finalize in class AlgorithmBase

hepticLagrangian2D

public double hepticLagrangian2D(double x,
                                 double y)

2D heptic Lagrangian function.

Parameters:

x - double point index

y - double point index

Returns:

the heptic Lagrangian interpolated data point

hepticLagrangian2DC

public double[] hepticLagrangian2DC(double x,
                                    double y)

2D heptic Lagrangian function for color.

Parameters:

x - double point index

y - double point index

Returns:

the heptic Lagrangian interpolated data point

hepticLagrangian3D

public final double hepticLagrangian3D(double x,
                                       double y,
                                       double z)

3D heptic Lagrangian function.

Parameters:

x - double point index

y - double point index

z - double point index

Returns:

the hepticLagrangian3D interpolated data point

hepticLagrangian3DC

public double[] hepticLagrangian3DC(double x,
                                    double y,
                                    double z)

3D heptic Lagrangian function for color (3 channel images).

Parameters:

x - double point index

y - double point index

z - double point index

Returns:

the hepticLagrangian3D interpolated data point

runAlgorithm

public void runAlgorithm()

run - default method that is not really appropiate for this class but must be defined because this class extends AlgorithmBase.

Specified by:

runAlgorithm in class AlgorithmBase

setup2DHepticLagrangian

public void setup2DHepticLagrangian(double[] vol,
                                    int[] extents,
                                    boolean clip)

Setup 2D hepticLagrangian.

Parameters:

vol - volume comprising control points for the heptic Lagrangian

extents - vol extents (xdim, ydim)

clip - if true clip output to range of input image

setup2DHepticLagrangianC

public void setup2DHepticLagrangianC(double[] vol,
                                     int[] extents,
                                     float argbMax,
                                     boolean clip)

Setup 2D hepticLagrangian for color.

Parameters:

vol - volume comprising control points for the heptic Lagrangian

extents - vol extents (xdim, ydim)

argbMax - maximum possible color value

clip - if true clip output to range of input image

setup3DHepticLagrangian

public void setup3DHepticLagrangian(double[] vol,
                                    int[] extents,
                                    boolean clip)

Setup 3D heptic Lagrangian.

Parameters:

vol - volume comprising control points for the heptic Lagrangian

extents - vol extents (xdim, ydim, zdim)

clip - if true clip output to range of input image

setup3DHepticLagrangianC

public void setup3DHepticLagrangianC(double[] vol,
                                     int[] extents,
                                     float argbMax,
                                     boolean clip)

Setup 3D heptic Lagrangian for color.

Parameters:

vol - volume comprising control points for the heptic Lagrangian

extents - vol extents (xdim, ydim, zdim)

argbMax - maximum possible color value

clip - if true clip output to range of input image