java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - gov.nih.mipav.view.ViewJComponentBase
      - gov.nih.mipav.view.ViewJComponentEditImage
        
        gov.nih.mipav.view.ViewJComponentTriImage

All Implemented Interfaces:

PaintGrowListener, ScreenCoordinateListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener
```
public class ViewJComponentTriImage
extends ViewJComponentEditImage
implements java.awt.event.MouseWheelListener, java.awt.event.KeyListener, ScreenCoordinateListener
```
One of the component images that make up the triplanar view (AXIAL, SAGITTAL, and CORONAL views).
Notes:
The protractor does not show up in ViewJComponentEditImage because it is not registered. If newVOI is hit, then the VOI must be registered for the points to show up in EditImage.

For the ViewJFrameTriImage addPoint command, that the ViewJComponentEditImage mode is set to DEFAULT while the ViewJComponentTriImage mode is set to POINT_VOI. For the Protractor command, the ViewJComponentTriImage mode is set to PROTRACTOR while the ViewJComponentEditImage mode is set to DEFAULT. For the Line command, the ViewJComponentTriImage mode is set to LINE while the ViewJComponentEditImage mode is set to DEFAULT. For the ViewJFrameTriImage center command, the ViewJComponentEditImage mode is set to DEFAULT while the ViewJComponentTriImage mode is set to CENTER_VOI. For the boundingBox command, the ViewJComponentEdit image mode is set to DEFAULT while the ViewJComponentTriImage mode is set to CUBE_BOUNDS. For the traverse command, both EditImage and TriImage have their modes set to DEFAULT. NEW_VOI, PAINT_VOI, DROPPER_PAINT, ERASER_PAINT, and PAINT_CAN are set in both EditImage and TriImage.

Author:

William Gandler

See Also:

ViewJFrameTriImage, ViewJComponentDualTriImage, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JComponent
  javax.swing.JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`static int`	`ANOTHER_PT`	AC-PC: Another midsagittal reference point.
`static int`	`ANTERIOR_PT`	Talairach: Anterior reference point.
`private java.lang.String[][]`	`axisLabels`	Labels for the axes:.
`private int[]`	`axisOrientation`
`private WildMagic.LibFoundation.Mathematics.Vector3f[]`	`cornerCropPt`	Crop Bounding Box Corners in Screen Coordinates:.
`private java.awt.Color[]`	`cropColor`	Crop Bounding Box Colors:.
`private WildMagic.LibFoundation.Mathematics.Vector2f[]`	`cropPoints`	Crop Bounding Box in Screen Coordinates:.
`private int`	`crosshairPixelGap`	the gap (in one direction) between the center of the crosshair and the actual crosshair line
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`crosshairPt`	The x and y coordinate of the cursor position in screen space of this component.
`private boolean`	`doCenter`	Whether to show the center of rotation point in the volume and allow the user to change it.
`private int`	`dragBBpt`	DOCUMENT ME!
`protected boolean`	`dragCenterPt`	DOCUMENT ME!
`static int`	`FIRST_PT`	AC-PC: First midsagittal reference point.
`private boolean`	`hasOrientation`	true if the imageActive has an orientation, false if imageActive is of FileInfoBase.UNKNOWN_ORIENT.
`private int[]`	`horizontalTalGridPts`	DOCUMENT ME!
`static int`	`INFERIOR_EDGE`	AC-PC: Inferior Edge reference point.
`static int`	`INFERIOR_PT`	Talairach: Inferior reference point.
`static int`	`LEFT_PT`	Talairach: Left reference point.
`private int[]`	`localImageExtents`	imageActive extents in the local (Patient) coordinate system:.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`m_kLocalCropLower`	Lower Crop Bounding Box in Patient Coordinates:.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`m_kLocalCropUpper`	Upper Crop Bounding Box in Patient Coordinates:.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`m_kVolumePoint`	Cursor 3D point in FileCoordinates.
`static int`	`POSTERIOR_MARGIN`	AC-PC: Posterior Margin reference point.
`static int`	`POSTERIOR_PT`	Talairach: Posterior reference point.
`private float[]`	`res`	Reordered resolutions according to orientation.
`static int`	`RIGHT_PT`	Talairach: Right reference point.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`protected boolean`	`showAxes`	If true, show XY, XZ, or ZY orientation axes in a corner of the component.
`protected boolean`	`showBoundingRect`	Specifies whether the user wants to show the cropping / paint bounds rectangle.
`protected boolean`	`showCrosshairs`	If true, show crosshairs indicating the currently position within the component.
`protected boolean`	`showTalairachGrid`	Whether to show the talairach grid on the component.
`protected boolean`	`showTalairachGridmarkers`	Whether to show the talairach gridmarkers on the component.
`static int`	`SUPERIOR_EDGE`	AC-PC: Superior Edge reference point.
`static int`	`SUPERIOR_PT`	Talairach: Superior reference point.
`private java.awt.Color`	`talairachMajorLineColor`	DOCUMENT ME!
`private java.awt.Color`	`talairachMinorLineColor`	DOCUMENT ME!
`protected ViewJFrameTriImage`	`triImageFrame`	The tri image frame of which this object is a component.
`private int[]`	`verticalTalGridPts`	DOCUMENT ME!
`private VOIProtractor`	`voiProtractor`	The protractor VOI.
`private java.awt.Color[]`	`xColor`	color of the crosshairs.
`private int`	`xCursorAdjustment`
`private java.awt.Color[]`	`yColor`	DOCUMENT ME!
`private int`	`yCursorAdjustment`
`private java.awt.Color[]`	`zColor`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage
ACTIVE_IMAGE_COLOR, allActive, alphaBlend, alphaPrime, checkerDialog, cleanImageBufferA, cleanImageBufferB, crosshairCursor, cursorMode, displayFuzzy, drawVOIs, frame, frameControls, fuzzyThreshold, GEOMETRIC_ZOOM, gridColor, gridLabelingOn, gridLabelOrientation, gridOverlayOn, gridSpacingX, gridSpacingY, growDialog, imageA, imageActive, imageB, imageBufferA, imageBufferActive, imageBufferB, imageExtents, imageStatList, intensityDropper, less, lessB, lessG, lessR, LINEAR_ZOOM, logMagDisplay, LUTa, LUTb, m_kPatientSlice, m_kWinLevel, MAGR_HEIGHT, MAGR_MAG, MAGR_WIDTH, magSettings, maxDistance, maxExtents, modifyFlag, more, moreB, moreG, moreR, mousePressIsShiftDown, MultiFrameEyetrackerMode, nColumnCheckers, nRowCheckers, onTop, orientation, overlayOn, paintBitmap, paintBitmapBU, paintBitmapSwitch, paintBrush, paintBrushDim, paintBrushDimPrevious, paintBrushPrevious, paintBrushSize, paintBuffer, paintImage, paintImagePrevious, pixBuffer, pixBufferB, PluginEyetrackerMode, previousPaintBrush, rgbString, RGBTA, RGBTB, saveValue, saveValueB, saveValueG, saveValueR, saveX, saveY, saveZ, seedPaintBitmap, seedVal, seedValB, seedValG, seedValR, SingleFrameEyetrackerMode, sizeLimit, slice, stringOverride, time, timeSlice, toppedColor, useBComp, useGComp, useRComp, useVOI, variableThresholds, visRect, voiManager, winLevel, winLevelSet, xMod, xPG, xStart, yMod, yPG, yStart, zPG

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase
ANNOTATION, BOTH, CENTER_VOI, CUBE_BOUNDS, DEFAULT, DELETE_POINT, DROPPER_PAINT, ELLIPSE, ERASER_PAINT, IMAGE_A, IMAGE_B, imageDim, img, imgB, interpMode, INTERPOLATE_A, INTERPOLATE_B, INTERPOLATE_BOTH, lastMouseX, lastMouseY, LEVELSET, LINE, LIVEWIRE, MAG_REGION, memImageA, memImageB, MOVE, MOVE_INTERSECTION_POINT, MOVE_POINT, MOVE_VOIPOINT, NEAREST_BOTH, NEW_POINT, NEW_VOI, OUT_OF_BOUNDS, PAINT_CAN, PAINT_VASC, PAINT_VOI, POINT_VOI, POLYLINE, POLYLINE_SLICE_VOI, PROBE, PROTRACTOR, QUICK_LUT, RECTANGLE, RECTANGLE3D, resolutionX, resolutionY, RETRACE, ROTATE, SELECT, showSliceNumber, sliceString, SMOOTH, SPLIT_VOI, textColor, TRANSLATE, VOI_3D, WAND, WIN_REGION, ZOOMING_IN, ZOOMING_OUT, zoomX, zoomY

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor	Description
`ViewJComponentTriImage(ViewJFrameBase _frame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, ModelImage _imageB, ModelLUT _LUTb, float[] imgBufferB, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation)`	The TriImage component constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`clearProtractor()`
`void`	`computeTalairachVoxelPosition(int x, int y)`	Computes the talairach grid voxel from a screen coordinate.
`private void`	`cornerToCrop()`	Creates the four corners of the crop bounding box, based on the two corner crop points:
`void`	`displayAxes(boolean doShowAxes)`	Sets whether axes (either anatomical or x,y,z if no orientation info) are shown or not in one of the corners of the component.
`void`	`displayXHairs(boolean doShowCrosshairs)`	Sets whether or not crosshairs are shown in the images.
`void`	`disposeLocal(boolean flag)`	Sets all variables to null, disposes, and garbage collects (sometimes).
`WildMagic.LibFoundation.Mathematics.Vector3f`	`downSlice()`	Decrements the current slice in local coordinates and returns the new position in the view-independent file coordinates.
`private void`	`drawAxes(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by paintComponent().
`private void`	`drawBoundingRect(java.awt.Graphics graphics)`	Draws the cropping rectangle.
`private void`	`drawCenterMark(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by paintComponent().
`private void`	`drawCrosshairLines(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by drawCrosshairsXY().
`private void`	`drawCrosshairs(java.awt.Graphics2D offscreenGraphics2d)`	Draws the crosshairs for this oriented tri-planar component.
`private void`	`drawCrosshairStubs(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by drawCrosshairs.
`private void`	`drawTalairachGrid_AXIAL(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by paintComponent().
`private void`	`drawTalairachGrid_CORONAL(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by paintComponent().
`private void`	`drawTalairachGrid_SAGITTAL(java.awt.Graphics2D offscreenGraphics2d)`	Convenience method called by paintComponent().
`protected void`	`finalize()`	Clean up memory used by the component.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getCenter()`	Returns the current center point in FileCoordinates:
`WildMagic.LibFoundation.Mathematics.Vector2f`	`getCrosshairPoint()`	Returns the current cross hair position in screen coordinates.
`private java.awt.BasicStroke`	`getDashedStroke()`	Builds the dashed stroke used to render the minor talairach grid lines.
`int[]`	`getExtents()`	Returns the extents of the tri planar component (in the component's order, not the image volume's).
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getProtractorCommonVertex()`
`float[]`	`getResolutions()`	DOCUMENT ME!
`WildMagic.LibFoundation.Mathematics.Vector2f`	`getScreenCoordinates(WildMagic.LibFoundation.Mathematics.Vector3f point3d)`	Accepts a point in volume space and converts it to screen space.
`double`	`getTheta()`	Accessor that returns the protractor angle.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getVolumePosition(float x, float y, float z)`	Translate a point on the x-y tri-image component into image volume space.
`Point3D`	`getVolumePosition(int x, int y, int z)`	Translate a point on the x-y tri-image component into image volume space.
`java.awt.Color`	`getXSliceHairColor()`	Get the color for the crosshairPt.X crosshair.
`java.awt.Color`	`getYSliceHairColor()`	Get the color for the ySlice crosshair.
`java.awt.Color`	`getZSliceHairColor()`	Get the color for the zSlice crosshair.
`boolean`	`isShowBoundingRect()`	Returns whether the bounding rectangle should be drawn.
`void`	`keyPressed(java.awt.event.KeyEvent e)`	keyReleased event method for KeyListener.
`void`	`keyReleased(java.awt.event.KeyEvent e)`
`void`	`keyTyped(java.awt.event.KeyEvent e)`
`protected void`	`makePaintImage(int[] paintImageBuffer, java.util.BitSet paintBitmap, int slice, ViewJFrameBase frame, boolean b2D)`	This method creates a buffer that will be used to make an image of the painted area on-screen.
`void`	`makeProtractor()`	Constructs and initializes one of the 3 protractors, depending on which component this is.
`void`	`mouseClicked(java.awt.event.MouseEvent mouseEvent)`	When an image is double-clicked with the right-mouse button, the slice of the parent image is updated to match the current volume slice.
`void`	`mouseDragged(java.awt.event.MouseEvent mouseEvent)`	A mouse-dragged event.
`void`	`mouseEntered(java.awt.event.MouseEvent mouseEvent)`	Mouse entry handler: tells the parent tri-image frame about the current component orientation.
`void`	`mouseExited(java.awt.event.MouseEvent mouseEvent)`	Mouse exit handler: repaints the image to get rid of the cursor if we are in a mode that custom draws the mouse cursor.
`void`	`mouseMoved(java.awt.event.MouseEvent mouseEvent)`	A mouse event.
`void`	`mousePressed(java.awt.event.MouseEvent mouseEvent)`	A mouse-pressed event.
`void`	`mouseReleased(java.awt.event.MouseEvent mouseEvent)`	A mouse-released event.
`void`	`mouseWheelMoved(java.awt.event.MouseWheelEvent event)`	Mouse wheel movement handler, used to change the displayed slice in the component.
`boolean`	`nearBoundsPoint(int mouseX, int mouseY, int boundsX, int boundsY)`	Returns true if mouse point is close to bounds point.
`void`	`paintComponent(java.awt.Graphics graphics)`	Paints the image, optionally draws the axis, the center of rotation point, the talairach grid, etc., and calls drawSelf for all VOIs.
`boolean`	`removeReference(java.lang.String label)`	Remove a talairach / ACPC reference point.
`boolean`	`screenToFile(int iX, int iY, int iZ, WildMagic.LibFoundation.Mathematics.Vector3f kVolumePt)`
`boolean`	`screenToFile(WildMagic.LibFoundation.Mathematics.Vector3f kScreen, WildMagic.LibFoundation.Mathematics.Vector3f kFile)`
`void`	`setCenter(int i, int j, int k)`	setCenter, sets the crosshairPt and the local copies of the volumePosition (in FileCoordinates and PatientCoordinates).
`void`	`setCrop(WildMagic.LibFoundation.Mathematics.Vector3f lower, WildMagic.LibFoundation.Mathematics.Vector3f upper)`	Sets the crop volume.
`void`	`setCrosshairPixelGap(int newGap)`	Sets the pixel gap to be used by the crosshair (in one direction away from the center)
`void`	`setCursorMode(int newMode)`	DOCUMENT ME!
`void`	`setDoCenter(boolean doCenter)`	Sets whether the center of rotation point should be displayed and the user should be allowed to change it.
`void`	`setReferenceXY(int pointType, WildMagic.LibFoundation.Mathematics.Vector3f pt)`	Set a talairach / ACPC reference point.
`void`	`setShowBoundingRect(boolean flag)`	Sets whether the bounding rectangle should be drawn.
`void`	`setXSliceHairColor(java.awt.Color c)`	Change the color for the x crosshair.
`void`	`setYSliceHairColor(java.awt.Color c)`	Change the color for the y crosshair.
`void`	`setZoom(float zX, float zY)`	sets the screen scale variable when setZoom is called:
`void`	`setZSliceHairColor(java.awt.Color c)`	Change the color for the z crosshair.
`boolean`	`show(int tSlice, ModelLUT _LUTa, ModelLUT _LUTb, boolean forceShow, int _interpMode)`	DOCUMENT ME!
`void`	`showTalairachGrid(boolean doShowTalairachGrid)`	Sets whether or not lines dividing the Talairach regions are shown.
`void`	`showTalairachGridmarkers(boolean doShowTalairachGridmarkers)`	Sets whether the talairach grid markers will be displayed.
`private boolean`	`showUsingOrientation(int tSlice, ModelLUT _LUTa, ModelLUT _LUTb, boolean forceShow, int _interpMode)`	For generating the display of 1 or 2 RGB images.
`void`	`update(java.awt.Graphics g)`	Calls `paintComponent` - reduces flicker.
`private void`	`updateCrop(int index, WildMagic.LibFoundation.Mathematics.Vector2f mousePoint)`	Updates the crop bounding volume when a point on the crop bounding box is dragged with the mouse.
`void`	`updateCrosshairPosition(int x, int y)`	Changes the crosshair coordinate (screen coordinate) that this component should display.
`protected void`	`updatePaintBitmap(boolean paintPixels, int x, int y)`	Updates the image volume's paint bitmap based on the current position of the mouse in the component, called after a mouse action indicates the user wants part of the image either painted or erased.
`private void`	`updateSlice(int newSlice)`	updates the slice value when the wheel is moved or the page_up, page_down keys are pressed.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`upSlice()`	Increments the current slice in local coordinates and returns the new position in the view-independent file coordinates.

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage
calcPaintedVolume, cine, commitMask, commitMask, commitMask, commitMask, commitPaintToMask, commitPaintToUbyteMask, createImg, createImg, ctMode, dispose, draw3DVOIs, drawGradicules, drawStringBW, eraseAllPaint, fileToScreen, fileToScreenVOI, getActiveImage, getActiveImageBuffer, getActiveImageSliceBuffer, getActiveLUT, getActiveRGB, getAlphaBlend, getBandSpacing, getBrushSize, getCleanImageBufferB, getCursorMode, getFrame, getGridColor, getGridLabeling, getGridLabelOrientation, getGridOverlay, getGridSpacingX, getGridSpacingY, getHBrushSize, getImageA, getImageB, getImageBufferA, getImageBufferB, getIntensityDropper, getLUTa, getLUTb, getMaxExtents, getModifyFlag, getNumPoints, getnVOI, getOpacity, getOrientation, getOverlayOn, getPaintBitmap, getPaintBuffer, getPaintMask, getPixBuffer, getPixBufferB, getRASScannerPositionLabels, getRGBPaintComponents, getRGBTA, getRGBTB, getScannerPositionLabels, getShowMagIntensityEnabled, getSlice, getTimeSlice, getVOIHandler, getVOIManager, getxMod, getxSep, getxStart, getyMod, getySep, getyStart, getZoomMagnitudeX, getZoomMagnitudeY, isCheckerboardAnimate, isCheckerboarded, isHighlight, isMakingCheckerboard, isZeroToOneLUTAdj, loadPaintBrush, loopBandSpacing, loopBandSpacingReverse, mousePressedPaint, openUDLUTandTransferFunct, paintComponentForPrinter, paintMagComponent, patientToScreen, patientToScreenVOI, performPaint, performPaint, processDefaultMouseDrag, quickSwitchBrush, readLUTandTFunctFrom, recordPanning, recordZoom, regionGrow, regionGrow, regionGrow, regionGrow, regionGrow, regionGrowColor, rememberPaintBrushSize, resetLUT, resetLUTs, resetPaintBrushSize, restartCheckerboardAnimateThread, saveLUTandTransferFunction, saveUDLUT, screenToFile, screenToFileVOI, screenToFileVOI, screenToFileVOI, setActiveImage, setAlphaBlend, setBandSpacing, setBuffers, setCenter, setCheckerboard, setCheckerboardAnimate, setCrosshairCursor, setDisplayFuzzy, setDrawVOIs, setEnabled, setEyetrackerRecordingMode, setEyetrackerRecordMode, setFrameControls, setFullScreenModeLocation, setFuzzyThreshold, setGridColor, setGridLabelingOn, setGridLabelOrientation, setGridOverlay, setGridSpacingX, setGridSpacingY, setGrowDialog, setHasThreshold1, setHasThreshold2, setHighlightColor, setImageA, setImageB, setImageBufferB, setImageColocalize, setImageExtents, setImageSlice, setIntensityDropper, setLess, setLessB, setLessG, setLessR, setLogMagDisplay, setLUTa, setLUTb, setMakingCheckerboard, setMaxDistance, setModifyFlag, setMore, setMoreB, setMoreG, setMoreR, setOverlay, setPaintBitmapSwitch, setPaintBrushSize, setPaintMask, setPixelInformationAtLocation, setRegionGrowVars, setRGBPaintComponents, setRGBTA, setRGBTB, setShowMagIntensity, setShowSliceNum, setSizeLimit, setSlice, setStringOverride, setThresholdColors, setThresholds, setTimeSlice, setUseVOI, setVariableThresholds, setVOIManager, setWindLevel, setxSep, setySep, setZeroToOneLUTAdj, show, show, show, showBlank, showGridOverlay, showOverlay, showRegionInfo, showRegionInfo, showRegionInfo, showStatisticsCalculator, undoLastPaint, updatePaint, updatePaintBrushCursor, useHighlight

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUI, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateUI

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAccessibleContext, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener
fileToScreenVOI, getHeight, getResolutionX, getResolutionY, getSlice, getWidth, getZoomX, getZoomY, patientToScreenVOI, screenToFileVOI, screenToFileVOI, screenToFileVOI, setCenter

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - SUPERIOR_EDGE
```
public static final int SUPERIOR_EDGE
```
    AC-PC: Superior Edge reference point. Used for conversions by the dialogs that create new AC-PC images.
    
    See Also:
    
    Constant Field Values
  - POSTERIOR_MARGIN
```
public static final int POSTERIOR_MARGIN
```
    AC-PC: Posterior Margin reference point. Used for conversions by the dialogs that create new AC-PC images.
    
    See Also:
    
    Constant Field Values
  - INFERIOR_EDGE
```
public static final int INFERIOR_EDGE
```
    AC-PC: Inferior Edge reference point. Used for conversions by the dialogs that create new AC-PC images.
    
    See Also:
    
    Constant Field Values
  - FIRST_PT
```
public static final int FIRST_PT
```
    AC-PC: First midsagittal reference point. Used for conversions by the dialogs that create new AC-PC images.
    
    See Also:
    
    Constant Field Values
  - ANOTHER_PT
```
public static final int ANOTHER_PT
```
    AC-PC: Another midsagittal reference point. Used for conversions by the dialogs that create new AC-PC images.
    
    See Also:
    
    Constant Field Values
  - ANTERIOR_PT
```
public static final int ANTERIOR_PT
```
    Talairach: Anterior reference point. Used for conversions by the dialogs that create new Talairach images.
    
    See Also:
    
    Constant Field Values
  - POSTERIOR_PT
```
public static final int POSTERIOR_PT
```
    Talairach: Posterior reference point. Used for conversions by the dialogs that create new Talairach images.
    
    See Also:
    
    Constant Field Values
  - SUPERIOR_PT
```
public static final int SUPERIOR_PT
```
    Talairach: Superior reference point. Used for conversions by the dialogs that create new Talairach images.
    
    See Also:
    
    Constant Field Values
  - INFERIOR_PT
```
public static final int INFERIOR_PT
```
    Talairach: Inferior reference point. Used for conversions by the dialogs that create new Talairach images.
    
    See Also:
    
    Constant Field Values
  - LEFT_PT
```
public static final int LEFT_PT
```
    Talairach: Left reference point. Used for conversions by the dialogs that create new Talairach images.
    
    See Also:
    
    Constant Field Values
  - RIGHT_PT
```
public static final int RIGHT_PT
```
    Talairach: Right reference point. Used for conversions by the dialogs that create new Talairach images.
    
    See Also:
    
    Constant Field Values
  - dragCenterPt
```
protected boolean dragCenterPt
```
    DOCUMENT ME!
  - axisLabels
```
private final java.lang.String[][] axisLabels
```
    Labels for the axes:.
  - cornerCropPt
```
private final WildMagic.LibFoundation.Mathematics.Vector3f[] cornerCropPt
```
    Crop Bounding Box Corners in Screen Coordinates:.
  - cropColor
```
private final java.awt.Color[] cropColor
```
    Crop Bounding Box Colors:.
  - cropPoints
```
private final WildMagic.LibFoundation.Mathematics.Vector2f[] cropPoints
```
    Crop Bounding Box in Screen Coordinates:.
  - crosshairPt
```
private final WildMagic.LibFoundation.Mathematics.Vector3f crosshairPt
```
    The x and y coordinate of the cursor position in screen space of this component.
  - doCenter
```
private boolean doCenter
```
    Whether to show the center of rotation point in the volume and allow the user to change it. doCenter is set true by center command and set false by DEFAULT and CUBE_BOUNDS modes.
  - dragBBpt
```
private int dragBBpt
```
    DOCUMENT ME!
  - hasOrientation
```
private boolean hasOrientation
```
    true if the imageActive has an orientation, false if imageActive is of FileInfoBase.UNKNOWN_ORIENT.
  - horizontalTalGridPts
```
private int[] horizontalTalGridPts
```
    DOCUMENT ME!
  - localImageExtents
```
private int[] localImageExtents
```
    imageActive extents in the local (Patient) coordinate system:.
  - m_kLocalCropLower
```
private final WildMagic.LibFoundation.Mathematics.Vector3f m_kLocalCropLower
```
    Lower Crop Bounding Box in Patient Coordinates:.
  - m_kLocalCropUpper
```
private final WildMagic.LibFoundation.Mathematics.Vector3f m_kLocalCropUpper
```
    Upper Crop Bounding Box in Patient Coordinates:.
  - m_kVolumePoint
```
private WildMagic.LibFoundation.Mathematics.Vector3f m_kVolumePoint
```
    Cursor 3D point in FileCoordinates.
  - res
```
private float[] res
```
    Reordered resolutions according to orientation. See ModelStorageBase.getResolutions( int index, int orientation ). The orientation parameter may be either: FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL for oriented slices, or FileInfoBase.UNKNOWN_ORIENT for the default slice orientation.
  - showAxes
```
protected boolean showAxes
```
    If true, show XY, XZ, or ZY orientation axes in a corner of the component.
  - showBoundingRect
```
protected boolean showBoundingRect
```
    Specifies whether the user wants to show the cropping / paint bounds rectangle.
  - showCrosshairs
```
protected boolean showCrosshairs
```
    If true, show crosshairs indicating the currently position within the component.
  - showTalairachGrid
```
protected boolean showTalairachGrid
```
    Whether to show the talairach grid on the component.
  - showTalairachGridmarkers
```
protected boolean showTalairachGridmarkers
```
    Whether to show the talairach gridmarkers on the component.
  - talairachMajorLineColor
```
private final java.awt.Color talairachMajorLineColor
```
    DOCUMENT ME!
  - talairachMinorLineColor
```
private final java.awt.Color talairachMinorLineColor
```
    DOCUMENT ME!
  - triImageFrame
```
protected final ViewJFrameTriImage triImageFrame
```
    The tri image frame of which this object is a component.
  - verticalTalGridPts
```
private int[] verticalTalGridPts
```
    DOCUMENT ME!
  - voiProtractor
```
private VOIProtractor voiProtractor
```
    The protractor VOI.
  - xColor
```
private final java.awt.Color[] xColor
```
    color of the crosshairs.
  - yColor
```
private final java.awt.Color[] yColor
```
    DOCUMENT ME!
  - zColor
```
private final java.awt.Color[] zColor
```
    DOCUMENT ME!
  - crosshairPixelGap
```
private int crosshairPixelGap
```
    the gap (in one direction) between the center of the crosshair and the actual crosshair line
  - axisOrientation
```
private int[] axisOrientation
```
  - xCursorAdjustment
```
private int xCursorAdjustment
```
  - yCursorAdjustment
```
private int yCursorAdjustment
```
- Constructor Detail
  - ViewJComponentTriImage
```
public ViewJComponentTriImage(ViewJFrameBase _frame,
                              ModelImage _imageA,
                              ModelLUT _LUTa,
                              float[] imgBufferA,
                              ModelImage _imageB,
                              ModelLUT _LUTb,
                              float[] imgBufferB,
                              int[] pixelBuffer,
                              float zoom,
                              int[] extents,
                              boolean logMagDisplay,
                              int _orientation)
```
    The TriImage component constructor. Sets up the initial slice to show, the placement of the crosshairs, updates the position labels, and the bounding box locations.
    Note that reordering occurs in paintBuffer and pixBuffer, but reordering does not occur in imageBuffer. Thus, for the ZY orientation in hasOrientation imageDim.width and imageDim.height are swapped in paintBuffer and pixBuffer, but not in imageBuffer.
    
    Parameters:
    
    _frame - frame where component will be displayed
    
    _imageA - Model of the image that will be displayed
    
    _LUTa - LUT used to display imageA
    
    imgBufferA - storage buffer used to display imageA
    
    _imageB - Model of the image that will be displayed
    
    _LUTb - LUT used to display imageB
    
    imgBufferB - storage buffer used to display imageB
    
    pixelBuffer - storage buffer used to build a displayable image
    
    zoom - initial magnification of the image
    
    extents - initial display dimensions of the image
    
    logMagDisplay - display log magnitude of the image
    
    _orientation - display orientation of the image
- Method Detail
  - clearProtractor
```
public void clearProtractor()
```
  - computeTalairachVoxelPosition
```
public void computeTalairachVoxelPosition(int x,
                                          int y)
```
    Computes the talairach grid voxel from a screen coordinate. Also updates the talairach voxel label in the tri-planar frame.
    
    Parameters:
    
    x - screen x
    
    y - screen y
  - displayAxes
```
public void displayAxes(boolean doShowAxes)
```
    Sets whether axes (either anatomical or x,y,z if no orientation info) are shown or not in one of the corners of the component.
    
    Parameters:
    
    doShowAxes - whether to show the axes
  - displayXHairs
```
public void displayXHairs(boolean doShowCrosshairs)
```
    Sets whether or not crosshairs are shown in the images.
    
    Parameters:
    
    doShowCrosshairs - whether to show the tri-image crosshairs
  - disposeLocal
```
public void disposeLocal(boolean flag)
```
    Sets all variables to null, disposes, and garbage collects (sometimes).
    
    Overrides:
    
    disposeLocal in class ViewJComponentEditImage
    
    Parameters:
    
    flag - if true garbage collector should be called.
  - getCenter
```
public WildMagic.LibFoundation.Mathematics.Vector3f getCenter()
```
    Returns the current center point in FileCoordinates:
    
    Returns:
    
    DOCUMENT ME!
  - getCrosshairPoint
```
public WildMagic.LibFoundation.Mathematics.Vector2f getCrosshairPoint()
```
    Returns the current cross hair position in screen coordinates.
    
    Returns:
    
    crosshairPt, the current cross-hair position in screen coordinates
  - getExtents
```
public int[] getExtents()
```
    Returns the extents of the tri planar component (in the component's order, not the image volume's).
    
    Returns:
    
    the extents of the tri image component
  - getResolutions
```
public float[] getResolutions()
```
    DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - getScreenCoordinates
```
public WildMagic.LibFoundation.Mathematics.Vector2f getScreenCoordinates(WildMagic.LibFoundation.Mathematics.Vector3f point3d)
```
    Accepts a point in volume space and converts it to screen space.
    
    Parameters:
    
    point3d - Point3D the point in volume space
    
    Returns:
    
    Point
  - getTheta
```
public double getTheta()
```
    Accessor that returns the protractor angle.
    
    Returns:
    
    the protractor angle
  - getProtractorCommonVertex
```
public WildMagic.LibFoundation.Mathematics.Vector3f getProtractorCommonVertex()
```
  - getVolumePosition
```
public final Point3D getVolumePosition(int x,
                                       int y,
                                       int z)
```
    Translate a point on the x-y tri-image component into image volume space. Assumes input parameters have zoom and voxel resolution already factored out.
    
    Parameters:
    
    x - x value of the point within the component
    
    y - y value of the point within the component
    
    z - the z coordinate ( usually == slice ) (the out-of-component dimension)
    
    Returns:
    
    the point translated into the image volume
  - getVolumePosition
```
public final WildMagic.LibFoundation.Mathematics.Vector3f getVolumePosition(float x,
                                                                            float y,
                                                                            float z)
```
    Translate a point on the x-y tri-image component into image volume space. Assumes input parameters have zoom and voxel resolution already factored out.
    
    Parameters:
    
    x - x value of the point within the component
    
    y - y value of the point within the component
    
    z - the z coordinate ( usually == slice ) (the out-of-component dimension)
    
    Returns:
    
    the point translated into the image volume
  - getXSliceHairColor
```
public java.awt.Color getXSliceHairColor()
```
    Get the color for the crosshairPt.X crosshair.
    
    Returns:
    
    the x crosshair color
  - getYSliceHairColor
```
public java.awt.Color getYSliceHairColor()
```
    Get the color for the ySlice crosshair.
    
    Returns:
    
    the y crosshair color
  - getZSliceHairColor
```
public java.awt.Color getZSliceHairColor()
```
    Get the color for the zSlice crosshair.
    
    Returns:
    
    the z crosshair color
  - isShowBoundingRect
```
public boolean isShowBoundingRect()
```
    Returns whether the bounding rectangle should be drawn.
    
    Returns:
    
    whether the bounding rectangle should be drawn
  - keyPressed
```
public void keyPressed(java.awt.event.KeyEvent e)
```
    keyReleased event method for KeyListener.
    
    Specified by:
    
    keyPressed in interface java.awt.event.KeyListener
    
    Parameters:
    
    e - KeyEvent
  - keyReleased
```
public void keyReleased(java.awt.event.KeyEvent e)
```
    Specified by:
    
    keyReleased in interface java.awt.event.KeyListener
  - keyTyped
```
public void keyTyped(java.awt.event.KeyEvent e)
```
    Specified by:
    
    keyTyped in interface java.awt.event.KeyListener
  - makeProtractor
```
public void makeProtractor()
```
    Constructs and initializes one of the 3 protractors, depending on which component this is.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent mouseEvent)
```
    When an image is double-clicked with the right-mouse button, the slice of the parent image is updated to match the current volume slice.
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseClicked in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - mouse event
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent mouseEvent)
```
    A mouse-dragged event.
    
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseDragged in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered function
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent mouseEvent)
```
    Mouse entry handler: tells the parent tri-image frame about the current component orientation.
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseEntered in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggers this function
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent mouseEvent)
```
    Mouse exit handler: repaints the image to get rid of the cursor if we are in a mode that custom draws the mouse cursor.
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseExited in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered function
  - mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent mouseEvent)
```
    A mouse event. If the mode is level set, draws level sets as user moves mouse. Otherwise, changes the cursor depending on where the mouse is in relation to the VOI.
    
    Specified by:
    
    mouseMoved in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseMoved in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered the function
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent mouseEvent)
```
    A mouse-pressed event. Sets the mode of the program depending on the cursor mode. If the mode is move, activates the contour or line and enables the delete button.
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Overrides:
    
    mousePressed in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered this function
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent mouseEvent)
```
    A mouse-released event. This function sets up and draws the VOI according to the mode.
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseReleased in class ViewJComponentEditImage
    
    Parameters:
    
    mouseEvent - event that triggered this function
  - mouseWheelMoved
```
public void mouseWheelMoved(java.awt.event.MouseWheelEvent event)
```
    Mouse wheel movement handler, used to change the displayed slice in the component.
    
    Specified by:
    
    mouseWheelMoved in interface java.awt.event.MouseWheelListener
    
    Overrides:
    
    mouseWheelMoved in class ViewJComponentEditImage
    
    Parameters:
    
    event - the mouse wheel rotation event
  - nearBoundsPoint
```
public boolean nearBoundsPoint(int mouseX,
                               int mouseY,
                               int boundsX,
                               int boundsY)
```
    Returns true if mouse point is close to bounds point.
    
    Parameters:
    
    mouseX - the x component of the mouse click within the component
    
    mouseY - the y component of the mouse click within the component
    
    boundsX - the x component of the bounds point to check against
    
    boundsY - the y component of the bounds point to check against
    
    Returns:
    
    true if mouse point is close to bounds point
  - paintComponent
```
public void paintComponent(java.awt.Graphics graphics)
```
    Paints the image, optionally draws the axis, the center of rotation point, the talairach grid, etc., and calls drawSelf for all VOIs.
    
    Overrides:
    
    paintComponent in class ViewJComponentEditImage
    
    Parameters:
    
    graphics - graphics to draw with
  - removeReference
```
public boolean removeReference(java.lang.String label)
```
    Remove a talairach / ACPC reference point.
    
    Parameters:
    
    label - the label of the reference point to remove
    
    Returns:
    
    true if the requested reference point was found and removed
  - setCenter
```
public void setCenter(int i,
                      int j,
                      int k)
```
    setCenter, sets the crosshairPt and the local copies of the volumePosition (in FileCoordinates and PatientCoordinates).
    
    Parameters:
    
    i - FileCoordinates
    
    j - FileCoordinates
    
    k - FileCoordinates
  - setCrop
```
public void setCrop(WildMagic.LibFoundation.Mathematics.Vector3f lower,
                    WildMagic.LibFoundation.Mathematics.Vector3f upper)
```
    Sets the crop volume.
    
    Parameters:
    
    lower - the lower corner of the crop volume in FileCoordinates
    
    upper - the upper corner of the crop volume in FileCoordinates
  - setCrosshairPixelGap
```
public void setCrosshairPixelGap(int newGap)
```
    Sets the pixel gap to be used by the crosshair (in one direction away from the center)
    
    Parameters:
    
    newGap - the new gap value
  - setCursorMode
```
public void setCursorMode(int newMode)
```
    DOCUMENT ME!
    
    Overrides:
    
    setCursorMode in class ViewJComponentEditImage
    
    Parameters:
    
    newMode - DOCUMENT ME!
  - setDoCenter
```
public void setDoCenter(boolean doCenter)
```
    Sets whether the center of rotation point should be displayed and the user should be allowed to change it.
    
    Parameters:
    
    doCenter - whether the center of rotation point should be displayed and the user should be allowed to change it
  - setReferenceXY
```
public void setReferenceXY(int pointType,
                           WildMagic.LibFoundation.Mathematics.Vector3f pt)
```
    Set a talairach / ACPC reference point.
    
    Parameters:
    
    pointType - the reference point type
    
    pt - the point position (in image volume space)
  - setShowBoundingRect
```
public void setShowBoundingRect(boolean flag)
```
    Sets whether the bounding rectangle should be drawn.
    
    Parameters:
    
    flag - whether the bounding rectangle should be drawn
  - setXSliceHairColor
```
public void setXSliceHairColor(java.awt.Color c)
```
    Change the color for the x crosshair.
    
    Parameters:
    
    c - the new crosshair color
  - setYSliceHairColor
```
public void setYSliceHairColor(java.awt.Color c)
```
    Change the color for the y crosshair.
    
    Parameters:
    
    c - the new crosshair color
  - setZoom
```
public void setZoom(float zX,
                    float zY)
```
    sets the screen scale variable when setZoom is called:
    
    Overrides:
    
    setZoom in class ViewJComponentBase
    
    Parameters:
    
    zX - new zoom factor in X
    
    zY - new zoom factor in Y
  - setZSliceHairColor
```
public void setZSliceHairColor(java.awt.Color c)
```
    Change the color for the z crosshair.
    
    Parameters:
    
    c - the new crosshair color
  - show
```
public boolean show(int tSlice,
                    ModelLUT _LUTa,
                    ModelLUT _LUTb,
                    boolean forceShow,
                    int _interpMode)
```
    DOCUMENT ME!
    
    Parameters:
    
    tSlice - DOCUMENT ME!
    
    _LUTa - DOCUMENT ME!
    
    _LUTb - DOCUMENT ME!
    
    forceShow - DOCUMENT ME!
    
    _interpMode - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - showTalairachGrid
```
public void showTalairachGrid(boolean doShowTalairachGrid)
```
    Sets whether or not lines dividing the Talairach regions are shown.
    
    Parameters:
    
    doShowTalairachGrid - whether to show the talairach region grid
  - showTalairachGridmarkers
```
public void showTalairachGridmarkers(boolean doShowTalairachGridmarkers)
```
    Sets whether the talairach grid markers will be displayed.
    
    Parameters:
    
    doShowTalairachGridmarkers - boolean show talairach grid markers
  - update
```
public void update(java.awt.Graphics g)
```
    Calls paintComponent - reduces flicker.
    
    Overrides:
    
    update in class ViewJComponentBase
    
    Parameters:
    
    g - graphics to draw with
  - updateCrosshairPosition
```
public void updateCrosshairPosition(int x,
                                    int y)
```
    Changes the crosshair coordinate (screen coordinate) that this component should display.
    
    Parameters:
    
    x - which x screen coordinate to show
    
    y - which y screen coordinate to show
    
    See Also:
    
    #xSlice, #ySlice, #zSlice
  - finalize
```
protected void finalize()
                 throws java.lang.Throwable
```
    Clean up memory used by the component.
    
    Overrides:
    
    finalize in class ViewJComponentEditImage
    
    Throws:
    
    java.lang.Throwable - if there is a problem encountered during memory clean-up
    
    See Also:
    
    disposeLocal(boolean)
  - makePaintImage
```
protected void makePaintImage(int[] paintImageBuffer,
                              java.util.BitSet paintBitmap,
                              int slice,
                              ViewJFrameBase frame,
                              boolean b2D)
```
    This method creates a buffer that will be used to make an image of the painted area on-screen.
    
    Overrides:
    
    makePaintImage in class ViewJComponentBase
    
    Parameters:
    
    paintImageBuffer - int[] the buffer to fill that will make the paint image
    
    paintBitmap - the bit map representing the painted pixels
    
    slice - the current slice to paint if this is a 3D image
    
    frame - the ViewJFrameBase containing the painted component.
    
    b2D - when true this is a 2D image component, when false it is greater than 2D
  - updatePaintBitmap
```
protected void updatePaintBitmap(boolean paintPixels,
                                 int x,
                                 int y)
```
    Updates the image volume's paint bitmap based on the current position of the mouse in the component, called after a mouse action indicates the user wants part of the image either painted or erased.
    
    Parameters:
    
    paintPixels - if true, the pixels under the paint brush should be painted. if false, they are cleared of any paint
    
    x - the x position of the mouse, adjusted for zoom and resolutions
    
    y - the y position of the mouse, adjusted for zoom and resolutions
  - cornerToCrop
```
private void cornerToCrop()
```
    Creates the four corners of the crop bounding box, based on the two corner crop points:
  - drawAxes
```
private void drawAxes(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by paintComponent(). Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - drawBoundingRect
```
private void drawBoundingRect(java.awt.Graphics graphics)
```
    Draws the cropping rectangle.
    
    Parameters:
    
    graphics - the graphics object to draw with
  - drawCenterMark
```
private void drawCenterMark(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by paintComponent(). Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - drawCrosshairLines
```
private void drawCrosshairLines(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by drawCrosshairsXY(). Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - drawCrosshairs
```
private void drawCrosshairs(java.awt.Graphics2D offscreenGraphics2d)
```
    Draws the crosshairs for this oriented tri-planar component.
    
    Parameters:
    
    offscreenGraphics2d - the graphics context to draw with
  - drawCrosshairStubs
```
private void drawCrosshairStubs(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by drawCrosshairs. Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - drawTalairachGrid_AXIAL
```
private void drawTalairachGrid_AXIAL(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by paintComponent(). Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - drawTalairachGrid_CORONAL
```
private void drawTalairachGrid_CORONAL(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by paintComponent(). Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - drawTalairachGrid_SAGITTAL
```
private void drawTalairachGrid_SAGITTAL(java.awt.Graphics2D offscreenGraphics2d)
```
    Convenience method called by paintComponent(). Inserted here for simplicity's sake.
    
    Parameters:
    
    offscreenGraphics2d - Graphics2D
  - getDashedStroke
```
private java.awt.BasicStroke getDashedStroke()
```
    Builds the dashed stroke used to render the minor talairach grid lines.
    
    Returns:
    
    the BasicStroke object used to render the minor talairach grid lines
  - showUsingOrientation
```
private boolean showUsingOrientation(int tSlice,
                                     ModelLUT _LUTa,
                                     ModelLUT _LUTb,
                                     boolean forceShow,
                                     int _interpMode)
```
    For generating the display of 1 or 2 RGB images.
    
    Parameters:
    
    tSlice - t (time) slice to show
    
    _LUTa - DOCUMENT ME!
    
    _LUTb - DOCUMENT ME!
    
    forceShow - forces this method to import image and recalculate java image
    
    _interpMode - DOCUMENT ME!
    
    Returns:
    
    boolean to indicate if the show was successful
  - updateCrop
```
private void updateCrop(int index,
                        WildMagic.LibFoundation.Mathematics.Vector2f mousePoint)
```
    Updates the crop bounding volume when a point on the crop bounding box is dragged with the mouse. Converts the mousePoint to the crop corners, converts from Screen space to PatientCoordinates (ScreenToLocal), then converts from PatientCoordinates to FileCoordinates and passes the new crop volume information to the ViewJFrameTriImage container class.
    
    Parameters:
    
    index - the index of the bounding box that changed
    
    mousePoint - the screen-space coordinats of the changed bounding box point.
  - updateSlice
```
private void updateSlice(int newSlice)
```
    updates the slice value when the wheel is moved or the page_up, page_down keys are pressed. Does bounds checking and comparison with the current slice value. Sets the new position and updates the triImageFrame.
    
    Parameters:
    
    newSlice - the new slice value
  - screenToFile
```
public boolean screenToFile(int iX,
                            int iY,
                            int iZ,
                            WildMagic.LibFoundation.Mathematics.Vector3f kVolumePt)
```
    Overrides:
    
    screenToFile in class ViewJComponentEditImage
  - screenToFile
```
public boolean screenToFile(WildMagic.LibFoundation.Mathematics.Vector3f kScreen,
                            WildMagic.LibFoundation.Mathematics.Vector3f kFile)
```
    Overrides:
    
    screenToFile in class ViewJComponentEditImage
  - upSlice
```
public WildMagic.LibFoundation.Mathematics.Vector3f upSlice()
```
    Increments the current slice in local coordinates and returns the new position in the view-independent file coordinates.
    
    Overrides:
    
    upSlice in class ViewJComponentEditImage
    
    Returns:
  - downSlice
```
public WildMagic.LibFoundation.Mathematics.Vector3f downSlice()
```
    Decrements the current slice in local coordinates and returns the new position in the view-independent file coordinates.
    
    Overrides:
    
    downSlice in class ViewJComponentEditImage
    
    Returns:

Class ViewJComponentTriImage

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage

Methods inherited from class gov.nih.mipav.view.ViewJComponentBase

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Field Detail

serialVersionUID

SUPERIOR_EDGE

POSTERIOR_MARGIN

INFERIOR_EDGE

FIRST_PT

ANOTHER_PT

ANTERIOR_PT

POSTERIOR_PT

SUPERIOR_PT

INFERIOR_PT

LEFT_PT

RIGHT_PT

dragCenterPt

axisLabels

cornerCropPt

cropColor

cropPoints

crosshairPt

doCenter

dragBBpt

hasOrientation

horizontalTalGridPts

localImageExtents

m_kLocalCropLower

m_kLocalCropUpper

m_kVolumePoint

res

showAxes

showBoundingRect

showCrosshairs

showTalairachGrid

showTalairachGridmarkers

talairachMajorLineColor

talairachMinorLineColor

triImageFrame

verticalTalGridPts

voiProtractor

xColor

yColor

zColor

crosshairPixelGap

axisOrientation

xCursorAdjustment

yCursorAdjustment

Constructor Detail

ViewJComponentTriImage

Method Detail

clearProtractor

computeTalairachVoxelPosition

displayAxes

displayXHairs

disposeLocal

getCenter

getCrosshairPoint

getExtents

getResolutions

getScreenCoordinates

getTheta

getProtractorCommonVertex