java.lang.Object
- gov.nih.mipav.model.file.FileBase
- - gov.nih.mipav.model.file.FileXML
  - - gov.nih.mipav.model.file.FileSurfaceGiftiXML
    - - gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM

```
public class FileSurfaceGiftiXML_WM
extends FileSurfaceGiftiXML
```
Inherits from FileXML, reads gifti xml files based on the "gifti.xsd" file. Defines specific variables for reading and writing gifti ascii xml files.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

private class FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler
Used by the XML Parser to parse the Surface.XML header.
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML
  FileXML.XMLAttributes

Field Summary

Fields
Modifier and Type	Field	Description
`protected static java.lang.String`	`GIFTI_HEADER`	Gifti header string (for top of xml header).
`private int`	`indexCount`	Connectivity index counter.
`private java.lang.String`	`intent`	Intent value in the attributes.
`private int`	`vertexCount`	Coordinate vertex point counter.

Fields inherited from class gov.nih.mipav.model.file.FileSurfaceGiftiXML
ArrayIndexingOrderValues, CoordinateSystemTransformMatrixStr, DataArrayAttributes, DataArrayStr, DataSpaceValues, DataStr, DataTypeValues, EncodingTypes, EndianValues, GiftiAttributes, GiftiStr, IntentValues, LabelStr, LabelTableStr, MatrixDataStr, MDStr, MetaDataStr, NameStr, TransformedSpaceStr, ValueStr

Fields inherited from class gov.nih.mipav.model.file.FileXML
bw, fileDir, fileInfo, fileName, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, W3C_XML_SCHEMA, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase
BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors
Constructor Description

FileSurfaceGiftiXML_WM(java.lang.String fName, java.lang.String fDir)
Constructs new file object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`closedTagGifti(java.lang.String tag, java.lang.String val)`	Simple function to write an xml formatted closed tag including the tag value.
`protected void`	`closedTagWithCDATA(java.lang.String tag, java.lang.String val)`	Simple function to write an xml formatted closed tag including the tag value.
`void`	`finalize()`	Prepares class for cleanup.
`java.lang.String`	`getCDATA(java.lang.String value)`	Converting string value to CDATA format.
`FileInfoSurfaceGiftiXML_WM`	`getFileInfo()`	Returns the FileInfoSurfaceRefXML read from the file.
`void`	`openTag(java.lang.String tag, java.util.Vector<FileXML.XMLAttributes> attr)`	Writes a closed tag where no value is specified, only attributes.
`WildMagic.LibGraphics.SceneGraph.TriMesh`	`readSurfaceXML(java.lang.String headerFileName, java.lang.String headerDir)`	Reads and parses a Gifti XML file.
`boolean`	`writeXMLsurface(java.lang.String fileName, WildMagic.LibGraphics.SceneGraph.TriMesh kMesh)`	Writes the XML file information, including the surface out to the given filename and path:

Methods inherited from class gov.nih.mipav.model.file.FileXML
closedTag, closedTag, closedTag, openTag, readHeader, setPBar

Methods inherited from class gov.nih.mipav.model.file.FileBase
addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - GIFTI_HEADER
```
protected static final java.lang.String GIFTI_HEADER
```
    Gifti header string (for top of xml header).
    
    See Also:
    
    Constant Field Values
  - intent
```
private java.lang.String intent
```
    Intent value in the attributes.
  - vertexCount
```
private int vertexCount
```
    Coordinate vertex point counter.
  - indexCount
```
private int indexCount
```
    Connectivity index counter.
- Constructor Detail
  - FileSurfaceGiftiXML_WM
```
public FileSurfaceGiftiXML_WM(java.lang.String fName,
                              java.lang.String fDir)
```
    Constructs new file object.
    
    Parameters:
    
    fName - File name.
    
    fDir - File directory.
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares class for cleanup.
    
    Overrides:
    
    finalize in class FileSurfaceGiftiXML
  - getFileInfo
```
public FileInfoSurfaceGiftiXML_WM getFileInfo()
```
    Returns the FileInfoSurfaceRefXML read from the file.
    
    Returns:
    
    File info read from file, or null if it has not been read.
  - readSurfaceXML
```
public WildMagic.LibGraphics.SceneGraph.TriMesh readSurfaceXML(java.lang.String headerFileName,
                                                               java.lang.String headerDir)
```
    Reads and parses a Gifti XML file.
    
    Parameters:
    
    headerFileName - file name of xml header
    
    headerDir - directory
    
    Returns:
    
    kMesh Triangle mesh
    
    Throws:
    
    java.io.IOException - file exception
  - writeXMLsurface
```
public boolean writeXMLsurface(java.lang.String fileName,
                               WildMagic.LibGraphics.SceneGraph.TriMesh kMesh)
                        throws java.io.IOException
```
    Writes the XML file information, including the surface out to the given filename and path:
    
    Parameters:
    
    fileName - file name to write to
    
    kMaterial - surface material
    
    opacity - surface opacity
    
    levelDetail - surface level of detail
    
    Returns:
    
    if header write was successful
    
    Throws:
    
    java.io.IOException - if a file I/O problem is encountered while writing the header
  - openTag
```
public void openTag(java.lang.String tag,
                    java.util.Vector<FileXML.XMLAttributes> attr)
```
    Writes a closed tag where no value is specified, only attributes.
  - closedTagGifti
```
protected void closedTagGifti(java.lang.String tag,
                              java.lang.String val)
```
    Simple function to write an xml formatted closed tag including the tag value.
    
    Parameters:
    
    bw - write to use
    
    tag - tag name
    
    val - tag value
  - closedTagWithCDATA
```
protected void closedTagWithCDATA(java.lang.String tag,
                                  java.lang.String val)
```
    Simple function to write an xml formatted closed tag including the tag value.
    
    Parameters:
    
    bw - write to use
    
    tag - tag name
    
    val - tag value
  - getCDATA
```
public java.lang.String getCDATA(java.lang.String value)
```
    Converting string value to CDATA format.
    
    Parameters:
    
    value - string
    
    Returns:
    
    CDATA section format string

Class FileSurfaceGiftiXML_WM

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileSurfaceGiftiXML

Fields inherited from class gov.nih.mipav.model.file.FileXML

Fields inherited from class gov.nih.mipav.model.file.FileBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileXML

Methods inherited from class gov.nih.mipav.model.file.FileBase

Methods inherited from class java.lang.Object

Field Detail

GIFTI_HEADER

intent

vertexCount

indexCount

Constructor Detail

FileSurfaceGiftiXML_WM

Method Detail

finalize

getFileInfo

readSurfaceXML

writeXMLsurface

openTag

closedTagGifti

closedTagWithCDATA

getCDATA