Package gov.nih.mipav.view.renderer.WildMagic.Interface

Class FileSurfaceGiftiXML_WM

java.lang.Object

gov.nih.mipav.model.file.FileBase

gov.nih.mipav.model.file.FileXML

gov.nih.mipav.model.file.FileSurfaceGiftiXML

gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM

public class FileSurfaceGiftiXML_WM
extends FileSurfaceGiftiXML

Inherits from FileXML, reads gifti xml files based on the "gifti.xsd" file. Defines specific variables for reading and writing gifti ascii xml files.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
private class	FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler	Used by the XML Parser to parse the Surface.XML header.

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

FileXML.XMLAttributes

Field Summary

Fields

Modifier and Type	Field	Description
protected static java.lang.String	GIFTI_HEADER	Gifti header string (for top of xml header).
private int	indexCount	Connectivity index counter.
private java.lang.String	intent	Intent value in the attributes.
private int	vertexCount	Coordinate vertex point counter.

Fields inherited from class gov.nih.mipav.model.file.FileSurfaceGiftiXML

ArrayIndexingOrderValues, CoordinateSystemTransformMatrixStr, DataArrayAttributes, DataArrayStr, DataSpaceValues, DataStr, DataTypeValues, EncodingTypes, EndianValues, GiftiAttributes, GiftiStr, IntentValues, LabelStr, LabelTableStr, MatrixDataStr, MDStr, MetaDataStr, NameStr, TransformedSpaceStr, ValueStr

Fields inherited from class gov.nih.mipav.model.file.FileXML

bw, fileDir, fileInfo, fileName, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, W3C_XML_SCHEMA, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase

BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors

Constructor	Description
FileSurfaceGiftiXML_WM(java.lang.String fName, java.lang.String fDir)	Constructs new file object.

Method Summary

Modifier and Type	Method	Description
protected void	closedTagGifti(java.lang.String tag, java.lang.String val)	Simple function to write an xml formatted closed tag including the tag value.
protected void	closedTagWithCDATA(java.lang.String tag, java.lang.String val)	Simple function to write an xml formatted closed tag including the tag value.
void	finalize()	Prepares class for cleanup.
java.lang.String	getCDATA(java.lang.String value)	Converting string value to CDATA format.
FileInfoSurfaceGiftiXML_WM	getFileInfo()	Returns the FileInfoSurfaceRefXML read from the file.
void	openTag(java.lang.String tag, java.util.Vector<FileXML.XMLAttributes> attr)	Writes a closed tag where no value is specified, only attributes.
WildMagic.LibGraphics.SceneGraph.TriMesh	readSurfaceXML(java.lang.String headerFileName, java.lang.String headerDir)	Reads and parses a Gifti XML file.
boolean	writeXMLsurface(java.lang.String fileName, WildMagic.LibGraphics.SceneGraph.TriMesh kMesh)	Writes the XML file information, including the surface out to the given filename and path:

Methods inherited from class gov.nih.mipav.model.file.FileXML

closedTag, closedTag, closedTag, openTag, readHeader, setPBar

Methods inherited from class gov.nih.mipav.model.file.FileBase

addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GIFTI_HEADER

protected static final java.lang.String GIFTI_HEADER

Gifti header string (for top of xml header).

See Also:

Constant Field Values

intent

private java.lang.String intent

Intent value in the attributes.

vertexCount

private int vertexCount

Coordinate vertex point counter.

indexCount

private int indexCount

Connectivity index counter.

Constructor Detail

FileSurfaceGiftiXML_WM

public FileSurfaceGiftiXML_WM(java.lang.String fName,
                              java.lang.String fDir)

Constructs new file object.

Parameters:

fName - File name.

fDir - File directory.

Method Detail

finalize

public void finalize()

Prepares class for cleanup.

Overrides:

finalize in class FileSurfaceGiftiXML

getFileInfo

public FileInfoSurfaceGiftiXML_WM getFileInfo()

Returns the FileInfoSurfaceRefXML read from the file.

Returns:

File info read from file, or null if it has not been read.

readSurfaceXML

public WildMagic.LibGraphics.SceneGraph.TriMesh readSurfaceXML(java.lang.String headerFileName,
                                                               java.lang.String headerDir)

Reads and parses a Gifti XML file.

Parameters:

headerFileName - file name of xml header

headerDir - directory

Returns:

kMesh Triangle mesh

Throws:

java.io.IOException - file exception

writeXMLsurface

public boolean writeXMLsurface(java.lang.String fileName,
                               WildMagic.LibGraphics.SceneGraph.TriMesh kMesh)
                        throws java.io.IOException

Writes the XML file information, including the surface out to the given filename and path:

Parameters:

fileName - file name to write to

kMaterial - surface material

opacity - surface opacity

levelDetail - surface level of detail

Returns:

if header write was successful

Throws:

java.io.IOException - if a file I/O problem is encountered while writing the header

openTag

public void openTag(java.lang.String tag,
                    java.util.Vector<FileXML.XMLAttributes> attr)

Writes a closed tag where no value is specified, only attributes.

closedTagGifti

protected void closedTagGifti(java.lang.String tag,
                              java.lang.String val)

Simple function to write an xml formatted closed tag including the tag value.

Parameters:

bw - write to use

tag - tag name

val - tag value

closedTagWithCDATA

protected void closedTagWithCDATA(java.lang.String tag,
                                  java.lang.String val)

Simple function to write an xml formatted closed tag including the tag value.

Parameters:

bw - write to use

tag - tag name

val - tag value

getCDATA

public java.lang.String getCDATA(java.lang.String value)

Converting string value to CDATA format.

Parameters:

value - string

Returns:

CDATA section format string