Package gov.nih.mipav.view.dialogs

Class JDialogPowerPaint

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogPowerPaint

All Implemented Interfaces:

DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class JDialogPowerPaint
extends JDialogBase
implements java.awt.event.MouseListener, java.awt.event.MouseWheelListener, java.awt.event.KeyListener, javax.swing.event.ChangeListener

Dialog box for the paint power tools: morphology operations, object delete, etc.

Version:

May 2005

Author:

Pierre-Louis Bazin

See Also:

JDialogBase, AlgorithmInterface, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private static int	ALLBACKGROUNDS	DOCUMENT ME!
private static int	BACKGROUND	DOCUMENT ME!
private int	backgroundDim	DOCUMENT ME!
private int	backgroundsDim	DOCUMENT ME!
private javax.swing.JPanel	botPanel	DOCUMENT ME!
private javax.swing.JButton	buttonDilate	DOCUMENT ME!
private javax.swing.JButton	buttonErode	DOCUMENT ME!
private javax.swing.JButton	buttonExportToMask	DOCUMENT ME!
private javax.swing.JButton	buttonExportToVOI	DOCUMENT ME!
private javax.swing.JButton	buttonFillBackground	DOCUMENT ME!
private javax.swing.JButton	buttonFillBackgrounds	DOCUMENT ME!
private javax.swing.JButton	buttonGrowRegion	DOCUMENT ME!
private javax.swing.JButton	buttonImportFromMask	DOCUMENT ME!
private javax.swing.JButton	buttonImportFromVOI	DOCUMENT ME!
private javax.swing.JButton	buttonRevert	DOCUMENT ME!
private javax.swing.JButton	buttonRmObject	DOCUMENT ME!
private javax.swing.JButton	buttonRmObjects	DOCUMENT ME!
private javax.swing.JToggleButton	buttonShortkeys	DOCUMENT ME!
private int	c2x	DOCUMENT ME!
private int	c2y	DOCUMENT ME!
private int	c2z	DOCUMENT ME!
private int	c3x	DOCUMENT ME!
private int	c3y	DOCUMENT ME!
private int	c3z	DOCUMENT ME!
private javax.swing.JCheckBox	checkSave	DOCUMENT ME!
private javax.swing.JCheckBox	checkThreshold	handling of intensity threshold.
private javax.swing.JComboBox	comboConnectType	DOCUMENT ME!
private javax.swing.JComboBox	comboDilateDimType	DOCUMENT ME!
private javax.swing.JComboBox	comboErodeDimType	DOCUMENT ME!
private javax.swing.JComboBox	comboStructureType	DOCUMENT ME!
private java.lang.String	connectType	DOCUMENT ME!
private java.lang.String[]	connectTypes	DOCUMENT ME!
private static int	delay	autosave elements.
private java.lang.String	dilateDimType	DOCUMENT ME!
private java.lang.String[]	dimTypes	DOCUMENT ME!
private java.lang.String	erodeDimType	DOCUMENT ME!
private javax.swing.JPanel	exportPanel	DOCUMENT ME!
private int	getMouseInput	DOCUMENT ME!
private javax.swing.ButtonGroup	groupBackground	DOCUMENT ME!
private javax.swing.ButtonGroup	groupBackgrounds	DOCUMENT ME!
private javax.swing.ButtonGroup	groupGrowRegion	DOCUMENT ME!
private javax.swing.ButtonGroup	groupObject	DOCUMENT ME!
private javax.swing.ButtonGroup	groupObjects	DOCUMENT ME!
private static int	GROWREGION	DOCUMENT ME!
private ModelImage	image	DOCUMENT ME!
private javax.swing.JLabel	labelConnectType	DOCUMENT ME!
private javax.swing.JLabel	labelO2D	DOCUMENT ME!
private javax.swing.JLabel	labelO3D	DOCUMENT ME!
private javax.swing.JLabel	labelStructureType	DOCUMENT ME!
private javax.swing.JLabel	labelStructuring	DOCUMENT ME!
private float	lowerThreshold	handling of intensity threshold.
private javax.swing.JPanel	mainPanel	dialog elements.
private static int	MaxObject	DOCUMENT ME!
private javax.swing.JPanel	morphoPanel	DOCUMENT ME!
private javax.swing.JPanel	movePanel	DOCUMENT ME!
private static int	NONE	DOCUMENT ME!
private int	nx	DOCUMENT ME!
private int	ny	DOCUMENT ME!
private int	nz	DOCUMENT ME!
private javax.swing.JPanel	objectPanel	DOCUMENT ME!
private javax.swing.JPanel	panelThreshold	DOCUMENT ME!
private java.util.BitSet	previous	internal objects.
private javax.swing.JRadioButton	radioBackground2D	DOCUMENT ME!
private javax.swing.JRadioButton	radioBackground3D	DOCUMENT ME!
private javax.swing.JRadioButton	radioBackgrounds2D	DOCUMENT ME!
private javax.swing.JRadioButton	radioBackgrounds3D	DOCUMENT ME!
private javax.swing.JRadioButton	radioGrowRegion2D	DOCUMENT ME!
private javax.swing.JRadioButton	radioGrowRegion3D	DOCUMENT ME!
private javax.swing.JRadioButton	radioObject2D	DOCUMENT ME!
private javax.swing.JRadioButton	radioObject3D	DOCUMENT ME!
private javax.swing.JRadioButton	radioObjects2D	DOCUMENT ME!
private javax.swing.JRadioButton	radioObjects3D	DOCUMENT ME!
private int	regionGrowDim	parameters.
private static int	REMOVE	DOCUMENT ME!
private static int	REMOVEALL	DOCUMENT ME!
private ModelImage	resultImage	DOCUMENT ME!
private int	rmObjDim	DOCUMENT ME!
private int	rmObjsDim	DOCUMENT ME!
private PaintAutoSave	save	DOCUMENT ME!
private java.util.Timer	saver	DOCUMENT ME!
private java.util.BitSet	se2xy	DOCUMENT ME!
private java.util.BitSet	se2xz	DOCUMENT ME!
private java.util.BitSet	se2yz	DOCUMENT ME!
private java.util.BitSet	se3	DOCUMENT ME!
private static long	serialVersionUID	Use serialVersionUID for interoperability.
private javax.swing.JSpinner	spinLower	handling of intensity threshold.
private javax.swing.JSpinner	spinUpper	DOCUMENT ME!
private float	structureSize	DOCUMENT ME!
private java.lang.String	structureType	DOCUMENT ME!
private java.lang.String[]	structureTypes	DOCUMENT ME!
private javax.swing.JTextField	textSave	DOCUMENT ME!
private javax.swing.JTextField	textStructuring	DOCUMENT ME!
private float	upperThreshold	handling of intensity threshold.
private static int	XY	DOCUMENT ME!
private static int	XZ	DOCUMENT ME!
private static int	ZY	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogPowerPaint(java.awt.Frame theParentFrame, ModelImage im)	Creates dialog for plugin.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(java.awt.event.ActionEvent event)	Closes dialog box when the OK button is pressed and calls the algorithm.
private int[][][]	connected18Object3D(boolean[][][] img, int nx, int ny, int nz)	3D images: 18-neighborhood.
private int[][][]	connected26Object3D(boolean[][][] img, int nx, int ny, int nz)	3D images: 26-neighborhood.
private int[][]	connected4Object2D(boolean[][] img, int nx, int ny)	2D images: 4-connectivity.
private int[][][]	connected6Object3D(boolean[][][] img, int nx, int ny, int nz)	3D images: 6-neighborhood.
private int[][]	connected8Object2D(boolean[][] img, int nx, int ny)	2D images: 8-neighborhood.
private void	createStructuringElement2D()	make the structuring element for morphology.
private void	createStructuringElement3D()	make the structuring element for morphology.
private void	dilateImage()	dilation.
private java.util.BitSet	dilateObject(java.util.BitSet img, int nx, int ny, int nz, java.util.BitSet mask, int dx, int dy, int dz)	dilate binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.
private void	erodeImage()	erosion.
private java.util.BitSet	erodeObject(java.util.BitSet img, int nx, int ny, int nz, java.util.BitSet mask, int dx, int dy, int dz)	erode binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.
private void	exportToMask()	export to Mask.
private void	exportToVOI()	export to VOI.
private void	fillAllBackgrounds(int xS, int yS, int zS, int sliceDir)	background filling algorithm.
private void	fillBackground(int xS, int yS, int zS, int sliceDir)	background filling algorithm.
ModelImage	getResultImage()	Accessor that returns the image.
private void	growRegion(int xS, int yS, int zS, int sliceDir)	region growing algorithm.
private void	importFromMask()	import from Mask.
private void	importFromVOI()	import from VOI.
private void	init()	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
private boolean	isInsideIntensityThreshold(int x, int y, int z, ModelImage img, int xS, int yS, int zS)	check if point (x,y,z) has same intensity as (xS,yS,zS)
void	keyPressed(java.awt.event.KeyEvent e)	Handle the key pressed event.
void	keyReleased(java.awt.event.KeyEvent e)	Handle the key released event.
void	keyTyped(java.awt.event.KeyEvent e)	Handle the key typed event.
void	mouseClicked(java.awt.event.MouseEvent mouseEvent)	Listening to mouse events when updating paint.
void	mouseEntered(java.awt.event.MouseEvent mouseEvent)	DOCUMENT ME!
void	mouseExited(java.awt.event.MouseEvent mouseEvent)	DOCUMENT ME!
void	mousePressed(java.awt.event.MouseEvent mouseEvent)	DOCUMENT ME!
void	mouseReleased(java.awt.event.MouseEvent mouseEvent)	DOCUMENT ME!
void	mouseWheelMoved(java.awt.event.MouseWheelEvent mouseEvent)	DOCUMENT ME!
private void	propagateAll()	propagate to all slices.
private void	propagateDown()	propagate to the next slice.
private void	propagateUp()	propagate to the next slice.
private void	refreshImagePaint(ModelImage img, java.util.BitSet obj)	refresh the displayed mask.
private void	removeAllObjects(int xS, int yS, int zS, int sliceDir)	object removal algorithm.
private void	removeObject(int xS, int yS, int zS, int sliceDir)	object removal algorithm.
private void	revertImage()	revert to previous mask.
void	stateChanged(javax.swing.event.ChangeEvent e)	state change listener for the sliders.
private void	trimIntensityThreshold(ModelImage img, java.util.BitSet obj, java.util.BitSet prev)	trim the mask using the intensity

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

Constant Field Values

MaxObject

private static final int MaxObject

DOCUMENT ME!

See Also:

Constant Field Values

NONE

private static int NONE

DOCUMENT ME!

BACKGROUND

private static int BACKGROUND

DOCUMENT ME!

ALLBACKGROUNDS

private static int ALLBACKGROUNDS

DOCUMENT ME!

REMOVE

private static int REMOVE

DOCUMENT ME!

REMOVEALL

private static int REMOVEALL

DOCUMENT ME!

GROWREGION

private static int GROWREGION

DOCUMENT ME!

XY

private static int XY

DOCUMENT ME!

XZ

private static int XZ

DOCUMENT ME!

ZY

private static int ZY

DOCUMENT ME!

delay

private static int delay

autosave elements.

backgroundDim

private int backgroundDim

DOCUMENT ME!

backgroundsDim

private int backgroundsDim

DOCUMENT ME!

botPanel

private javax.swing.JPanel botPanel

DOCUMENT ME!

buttonDilate

private javax.swing.JButton buttonDilate

DOCUMENT ME!

buttonErode

private javax.swing.JButton buttonErode

DOCUMENT ME!

buttonExportToMask

private javax.swing.JButton buttonExportToMask

DOCUMENT ME!

buttonExportToVOI

private javax.swing.JButton buttonExportToVOI

DOCUMENT ME!

buttonFillBackground

private javax.swing.JButton buttonFillBackground

DOCUMENT ME!

buttonFillBackgrounds

private javax.swing.JButton buttonFillBackgrounds

DOCUMENT ME!

buttonGrowRegion

private javax.swing.JButton buttonGrowRegion

DOCUMENT ME!

buttonImportFromMask

private javax.swing.JButton buttonImportFromMask

DOCUMENT ME!

buttonImportFromVOI

private javax.swing.JButton buttonImportFromVOI

DOCUMENT ME!

buttonRevert

private javax.swing.JButton buttonRevert

DOCUMENT ME!

buttonRmObject

private javax.swing.JButton buttonRmObject

DOCUMENT ME!

buttonRmObjects

private javax.swing.JButton buttonRmObjects

DOCUMENT ME!

buttonShortkeys

private javax.swing.JToggleButton buttonShortkeys

DOCUMENT ME!

c2x

private int c2x

DOCUMENT ME!

c2y

private int c2y

DOCUMENT ME!

c2z

private int c2z

DOCUMENT ME!

c3x

private int c3x

DOCUMENT ME!

c3y

private int c3y

DOCUMENT ME!

c3z

private int c3z

DOCUMENT ME!

checkSave

private javax.swing.JCheckBox checkSave

DOCUMENT ME!

checkThreshold

private javax.swing.JCheckBox checkThreshold

handling of intensity threshold.

comboConnectType

private javax.swing.JComboBox comboConnectType

DOCUMENT ME!

comboDilateDimType

private javax.swing.JComboBox comboDilateDimType

DOCUMENT ME!

comboErodeDimType

private javax.swing.JComboBox comboErodeDimType

DOCUMENT ME!

comboStructureType

private javax.swing.JComboBox comboStructureType

DOCUMENT ME!

connectType

private java.lang.String connectType

DOCUMENT ME!

connectTypes

private java.lang.String[] connectTypes

DOCUMENT ME!

dilateDimType

private java.lang.String dilateDimType

DOCUMENT ME!

dimTypes

private java.lang.String[] dimTypes

DOCUMENT ME!

erodeDimType

private java.lang.String erodeDimType

DOCUMENT ME!

exportPanel

private javax.swing.JPanel exportPanel

DOCUMENT ME!

getMouseInput

private int getMouseInput

DOCUMENT ME!

groupBackground

private javax.swing.ButtonGroup groupBackground

DOCUMENT ME!

groupBackgrounds

private javax.swing.ButtonGroup groupBackgrounds

DOCUMENT ME!

groupGrowRegion

private javax.swing.ButtonGroup groupGrowRegion

DOCUMENT ME!

groupObject

private javax.swing.ButtonGroup groupObject

DOCUMENT ME!

groupObjects

private javax.swing.ButtonGroup groupObjects

DOCUMENT ME!

image

private ModelImage image

DOCUMENT ME!

labelConnectType

private javax.swing.JLabel labelConnectType

DOCUMENT ME!

labelO2D

private javax.swing.JLabel labelO2D

DOCUMENT ME!

labelO3D

private javax.swing.JLabel labelO3D

DOCUMENT ME!

labelStructureType

private javax.swing.JLabel labelStructureType

DOCUMENT ME!

labelStructuring

private javax.swing.JLabel labelStructuring

DOCUMENT ME!

lowerThreshold

private float lowerThreshold

handling of intensity threshold.

mainPanel

private javax.swing.JPanel mainPanel

dialog elements.

morphoPanel

private javax.swing.JPanel morphoPanel

DOCUMENT ME!

movePanel

private javax.swing.JPanel movePanel

DOCUMENT ME!

nx

private int nx

DOCUMENT ME!

ny

private int ny

DOCUMENT ME!

nz

private int nz

DOCUMENT ME!

objectPanel

private javax.swing.JPanel objectPanel

DOCUMENT ME!

panelThreshold

private javax.swing.JPanel panelThreshold

DOCUMENT ME!

previous

private java.util.BitSet previous

internal objects.

radioBackground2D

private javax.swing.JRadioButton radioBackground2D

DOCUMENT ME!

radioBackground3D

private javax.swing.JRadioButton radioBackground3D

DOCUMENT ME!

radioBackgrounds2D

private javax.swing.JRadioButton radioBackgrounds2D

DOCUMENT ME!

radioBackgrounds3D

private javax.swing.JRadioButton radioBackgrounds3D

DOCUMENT ME!

radioGrowRegion2D

private javax.swing.JRadioButton radioGrowRegion2D

DOCUMENT ME!

radioGrowRegion3D

private javax.swing.JRadioButton radioGrowRegion3D

DOCUMENT ME!

radioObject2D

private javax.swing.JRadioButton radioObject2D

DOCUMENT ME!

radioObject3D

private javax.swing.JRadioButton radioObject3D

DOCUMENT ME!

radioObjects2D

private javax.swing.JRadioButton radioObjects2D

DOCUMENT ME!

radioObjects3D

private javax.swing.JRadioButton radioObjects3D

DOCUMENT ME!

regionGrowDim

private int regionGrowDim

parameters.

resultImage

private ModelImage resultImage

DOCUMENT ME!

rmObjDim

private int rmObjDim

DOCUMENT ME!

rmObjsDim

private int rmObjsDim

DOCUMENT ME!

save

private PaintAutoSave save

DOCUMENT ME!

saver

private java.util.Timer saver

DOCUMENT ME!

se2xy

private java.util.BitSet se2xy

DOCUMENT ME!

se2yz

private java.util.BitSet se2yz

DOCUMENT ME!

se2xz

private java.util.BitSet se2xz

DOCUMENT ME!

se3

private java.util.BitSet se3

DOCUMENT ME!

spinLower

private javax.swing.JSpinner spinLower

handling of intensity threshold.

spinUpper

private javax.swing.JSpinner spinUpper

DOCUMENT ME!

structureSize

private float structureSize

DOCUMENT ME!

structureType

private java.lang.String structureType

DOCUMENT ME!

structureTypes

private java.lang.String[] structureTypes

DOCUMENT ME!

textSave

private javax.swing.JTextField textSave

DOCUMENT ME!

textStructuring

private javax.swing.JTextField textStructuring

DOCUMENT ME!

upperThreshold

private float upperThreshold

handling of intensity threshold.

Constructor Detail

JDialogPowerPaint

public JDialogPowerPaint(java.awt.Frame theParentFrame,
                         ModelImage im)

Creates dialog for plugin.

Parameters:

theParentFrame - Parent frame.

im - Source image.

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

Closes dialog box when the OK button is pressed and calls the algorithm.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class JDialogBase

Parameters:

event - Event that triggers function.

getResultImage

public ModelImage getResultImage()

Accessor that returns the image.

Returns:

The result image.

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

Handle the key pressed event.

Specified by:

keyPressed in interface java.awt.event.KeyListener

Parameters:

e - DOCUMENT ME!

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

Handle the key released event.

Specified by:

keyReleased in interface java.awt.event.KeyListener

Parameters:

e - DOCUMENT ME!

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

Handle the key typed event.

Specified by:

keyTyped in interface java.awt.event.KeyListener

Parameters:

e - DOCUMENT ME!

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent mouseEvent)

Listening to mouse events when updating paint.

Specified by:

mouseClicked in interface java.awt.event.MouseListener

Parameters:

mouseEvent - MouseEvent

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent mouseEvent)

DOCUMENT ME!

Specified by:

mouseEntered in interface java.awt.event.MouseListener

Parameters:

mouseEvent - DOCUMENT ME!

mouseExited

public void mouseExited(java.awt.event.MouseEvent mouseEvent)

DOCUMENT ME!

Specified by:

mouseExited in interface java.awt.event.MouseListener

Parameters:

mouseEvent - DOCUMENT ME!

mousePressed

public void mousePressed(java.awt.event.MouseEvent mouseEvent)

DOCUMENT ME!

Specified by:

mousePressed in interface java.awt.event.MouseListener

Parameters:

mouseEvent - DOCUMENT ME!

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent mouseEvent)

DOCUMENT ME!

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Parameters:

mouseEvent - DOCUMENT ME!

mouseWheelMoved

public void mouseWheelMoved(java.awt.event.MouseWheelEvent mouseEvent)

DOCUMENT ME!

Specified by:

mouseWheelMoved in interface java.awt.event.MouseWheelListener

Parameters:

mouseEvent - DOCUMENT ME!

stateChanged

public void stateChanged(javax.swing.event.ChangeEvent e)

state change listener for the sliders.

Specified by:

stateChanged in interface javax.swing.event.ChangeListener

Parameters:

e - DOCUMENT ME!

connected18Object3D

private int[][][] connected18Object3D(boolean[][][] img,
                                      int nx,
                                      int ny,
                                      int nz)

3D images: 18-neighborhood.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

nz - DOCUMENT ME!

Returns:

DOCUMENT ME!

connected26Object3D

private int[][][] connected26Object3D(boolean[][][] img,
                                      int nx,
                                      int ny,
                                      int nz)

3D images: 26-neighborhood.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

nz - DOCUMENT ME!

Returns:

DOCUMENT ME!

connected4Object2D

private int[][] connected4Object2D(boolean[][] img,
                                   int nx,
                                   int ny)

2D images: 4-connectivity.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

Returns:

DOCUMENT ME!

connected6Object3D

private int[][][] connected6Object3D(boolean[][][] img,
                                     int nx,
                                     int ny,
                                     int nz)

3D images: 6-neighborhood.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

nz - DOCUMENT ME!

Returns:

DOCUMENT ME!

connected8Object2D

private int[][] connected8Object2D(boolean[][] img,
                                   int nx,
                                   int ny)

2D images: 8-neighborhood.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

Returns:

DOCUMENT ME!

createStructuringElement2D

private void createStructuringElement2D()

make the structuring element for morphology.

createStructuringElement3D

private void createStructuringElement3D()

make the structuring element for morphology.

dilateImage

private void dilateImage()

dilation.

dilateObject

private java.util.BitSet dilateObject(java.util.BitSet img,
                                      int nx,
                                      int ny,
                                      int nz,
                                      java.util.BitSet mask,
                                      int dx,
                                      int dy,
                                      int dz)

dilate binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

nz - DOCUMENT ME!

mask - DOCUMENT ME!

dx - DOCUMENT ME!

dy - DOCUMENT ME!

dz - DOCUMENT ME!

Returns:

DOCUMENT ME!

erodeImage

private void erodeImage()

erosion.

erodeObject

private java.util.BitSet erodeObject(java.util.BitSet img,
                                     int nx,
                                     int ny,
                                     int nz,
                                     java.util.BitSet mask,
                                     int dx,
                                     int dy,
                                     int dz)

erode binary object with a custom kernel using the BitSet structure with indexing convention index = x + nx*y + nx*ny*z.

Parameters:

img - DOCUMENT ME!

nx - DOCUMENT ME!

ny - DOCUMENT ME!

nz - DOCUMENT ME!

mask - DOCUMENT ME!

dx - DOCUMENT ME!

dy - DOCUMENT ME!

dz - DOCUMENT ME!

Returns:

DOCUMENT ME!

exportToMask

private void exportToMask()

export to Mask.

exportToVOI

private void exportToVOI()

export to VOI.

fillAllBackgrounds

private void fillAllBackgrounds(int xS,
                                int yS,
                                int zS,
                                int sliceDir)

background filling algorithm.

Parameters:

xS - ModelImage-Space x coordinate

yS - ModelImage-Space y coordinate

zS - ModelImage-Space z coordinate

sliceDir - (XY, XZ, ZY)

fillBackground

private void fillBackground(int xS,
                            int yS,
                            int zS,
                            int sliceDir)

background filling algorithm.

Parameters:

xS - ModelImage-Space x coordinate

yS - ModelImage-Space y coordinate

zS - ModelImage-Space z coordinate

sliceDir - (XY, XZ, ZY)

growRegion

private void growRegion(int xS,
                        int yS,
                        int zS,
                        int sliceDir)

region growing algorithm.

Parameters:

xS - ModelImage-Space x coordinate

yS - ModelImage-Space y coordinate

zS - ModelImage-Space z coordinate

sliceDir - (XY, XZ, ZY)

importFromMask

private void importFromMask()

import from Mask.

importFromVOI

private void importFromVOI()

import from VOI.

init

private void init()

Sets up the GUI (panels, buttons, etc) and displays it on the screen.

propagateAll

private void propagateAll()

propagate to all slices.

propagateDown

private void propagateDown()

propagate to the next slice.

propagateUp

private void propagateUp()

propagate to the next slice.

refreshImagePaint

private void refreshImagePaint(ModelImage img,
                               java.util.BitSet obj)

refresh the displayed mask.

Parameters:

img - DOCUMENT ME!

obj - DOCUMENT ME!

isInsideIntensityThreshold

private boolean isInsideIntensityThreshold(int x,
                                           int y,
                                           int z,
                                           ModelImage img,
                                           int xS,
                                           int yS,
                                           int zS)

check if point (x,y,z) has same intensity as (xS,yS,zS)

trimIntensityThreshold

private void trimIntensityThreshold(ModelImage img,
                                    java.util.BitSet obj,
                                    java.util.BitSet prev)

trim the mask using the intensity

Parameters:

img - DOCUMENT ME!

obj - DOCUMENT ME!

prev - DOCUMENT ME!

removeAllObjects

private void removeAllObjects(int xS,
                              int yS,
                              int zS,
                              int sliceDir)

object removal algorithm.

Parameters:

xS - ModelImage-Space x coordinate

yS - ModelImage-Space y coordinate

zS - ModelImage-Space z coordinate

sliceDir - (XY, XZ, ZY)

removeObject

private void removeObject(int xS,
                          int yS,
                          int zS,
                          int sliceDir)

object removal algorithm.

Parameters:

xS - ModelImage-Space x coordinate

yS - ModelImage-Space y coordinate

zS - ModelImage-Space z coordinate

sliceDir - (XY, XZ, ZY)

revertImage

private void revertImage()

revert to previous mask.