Package gov.nih.mipav.view

Class ViewJFrameMultimodalitySingleViewer

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

gov.nih.mipav.view.ViewJFrameBase

gov.nih.mipav.view.ViewJFrameTriImage

gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer

All Implemented Interfaces:

VOIManagerInterfaceListener, ViewImageUpdateInterface, ActionListener, ComponentListener, ItemListener, KeyListener, MouseListener, MouseMotionListener, MouseWheelListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

public class ViewJFrameMultimodalitySingleViewer
extends ViewJFrameTriImage
implements ItemListener, ChangeListener, KeyListener, MouseListener, MouseMotionListener, MouseWheelListener, VOIManagerInterfaceListener

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	ViewJFrameMultimodalitySingleViewer.MousePopupListener

Nested classes/interfaces inherited from class gov.nih.mipav.view.ViewJFrameTriImage

ViewJFrameTriImage.OkColorListener, ViewJFrameTriImage.PaintBoxRenderer

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private ImageIcon	blackImage
private JComboBox	comboBoxImage
private ImageIcon	cornerImage
private ViewJFrameImage	currentFrame
private int	currentSlice
private int	imageActiveIndex
private ViewJComponentEditImage[]	imageComp
private ViewJFrameImage[]	imageFrame
private String[]	imageNames
private int	imageNamesIndex
private ModelImage[]	images
private JFileChooser	imagesChooser	target image variables.
private JScrollPane	imageScroll
private float	initZoomFactor
private JLabel	label1
private JLabel	label2
private JLabel	label3
private JLabel	label4
private JLabel	label5
private JLabel	label6
private JLabel	label7
private JLabel	label8
private JPanel	leftPanel
private JPanel	lowerPanel
private Point	origin
private JPopupMenu	popup
private boolean	pressed
private JPanel	quadImagePanel
private JPanel	rightPanel
protected Font	serif12
protected Font	serif12B
private int	sliceNumCache
private JTextField[]	slicesTextField
private JLabel[]	sliderMax
private JPanel	sliderPanel
private JPanel	topPanel
private ViewUserInterface	UI	The main user interface.
(package private) static int	v
private int[]	zDim
private JSlider[]	zImageSlider

Fields inherited from class gov.nih.mipav.view.ViewJFrameTriImage

addPointToggleButton, ATLAS_AC_TO_ANT, ATLAS_AC_TO_INF, ATLAS_AC_TO_LAT, ATLAS_AC_TO_PC, ATLAS_AC_TO_SUP, ATLAS_BBOX_ANT, ATLAS_BBOX_INF, ATLAS_BBOX_INF_NEW, ATLAS_BBOX_LAT, ATLAS_BBOX_POS, ATLAS_BBOX_SUP, ATLAS_PC_TO_POS, AXIAL_A, AXIAL_AB, AXIAL_B, bogusBorderPaintButton, borderPaintButton, btnInvisible, bufferFactor, centerButtonSelected, chkShowTalairachGrid, chkShowTalairachGridMarkers, color, colorChooser, colorPaintButton, controls, coordinateListeners, CORONAL_A, CORONAL_AB, CORONAL_B, crosshairSpinner, currentAbsolutePositionLabels, DEFAULT_OPTIMAL_ZOOM, defaultPreferredHeight, dropperPaintToggleButton, extents, IMAGE_ALIGN_TOOLBAR, imageAlignToolBar, imageToolBar, indivMagButton, indivMinButton, intensitySpinner, iTalLabel, labelXTal, labelYTal, labelZTal, leastSquaresButton, magButton, MAX_INITIAL_TRI_IMAGES, menuObj, minButton, NUM_INVISIBLE_BUTTONS, OLD_LAYOUT, oldLayout, OPACITY, PAINT_TOOLBAR, paintBox, paintBrushNames, paintCanToggleButton, paintToolBar, PANEL_PLUGIN, panelActiveImage, panelToolbar, panelToolBarGBC, parentFrame, pluginPanel, radioImageA, radioImageB, radioImageBoth, resols, RGBTa, RGBTb, SAGITTAL_A, SAGITTAL_AB, SAGITTAL_B, scrollButton, scrollOriginalCrosshair, scrollPane, showTalairachGrid, showTalairachPosition, talairachPanel, tDim, tImageSlider, toolbarBuilder, tpSplineButton, traverseButton, triImage, triImagePanel, tSlice, tTalVoxLabel, units, useInfNew, viewPanel, VOI_TOOLBAR, VOIGroup, voiManager, voiMenu, volumeCenter, volumePositionFrame, volumePositionPanel, xTalLabel, yTalLabel, zoom, zTalLabel

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
ViewJFrameMultimodalitySingleViewer(ModelImage _imageA, ViewJFrameImage frame)

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Calls various methods depending on the action.
void	addPopup()
private void	adjustScrollbars(int x, int y, JScrollPane scrollPane)	DOCUMENT ME!
protected void	buildActiveImagePanel()	Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
private void	buildComboBoxImage()	Builds a list of images to operate on from the template image.
private void	buildSlider(JPanel rightPanel)
(package private) void	captureComponent(Component component)
private void	changeIcon(String whiteCicleName, String blackCircleName)
void	disposeLocal()	Should be called when window is closing to perform cleanup.
void	equalScaleImage()
void	equalScaleImageLight()
protected void	finalize()	DOCUMENT ME!
int[]	getCenter()	Sets the x coordinate of the point to be the center of the transformed image.
WildMagic.LibFoundation.Mathematics.Vector3f	getCenterPt()
JFrame	getFrame()
private void	getFramesInfo()
ModelImage	getImageA()	Accessor that returns the reference to imageA.
ModelImage	getImageB()	Accessor that returns the reference to imageB.
ViewJFrameTriImage	getLinkedTriFrame()	Gets the linked ViewJFrameTriImage.
ViewJFrameImage	getParentFrame()	Returns a reference to the ViewJFrameImage object that is the parent of this frame.
private void	initLayout()
void	invokeMeasure()
void	keyPressed(KeyEvent e)	keyPressed event method for KeyListener.
void	keyReleased(KeyEvent e)	keyReleased event method for KeyListener.
void	keyTyped(KeyEvent e)	DOCUMENT ME!
void	mouseClicked(MouseEvent event)	DOCUMENT ME!
void	mouseDragged(MouseEvent e)
void	mouseEntered(MouseEvent event)	DOCUMENT ME!
void	mouseExited(MouseEvent event)	DOCUMENT ME!
void	mouseMoved(MouseEvent evt)
void	mousePressed(MouseEvent event)	DOCUMENT ME!
void	mouseReleased(MouseEvent event)	DOCUMENT ME!
void	mouseWheelMoved(MouseWheelEvent mouseWheelEvent)
private void	readImages(File dir)
private void	readMultlmodalImages()	File chooser to select target image directory.
void	setActiveImage(int active)	Set the active image for drawing VOIs.
void	setCenter(int i, int j, int k)	sets the crosshair positions and slices for each of the triImages.
void	setCenter(int i, int j, int k, boolean checkLinkedScroll)	sets the crosshair positions and slices for each of the triImages.
void	setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
void	setCursor(Cursor kCursor)
void	setEnabled(boolean flag)	Controls whether or not the images/VOIs of the frame can be modified.
void	setImageA(ModelImage image)	Changes imageA to a new model image reference.
void	setImageB(ModelImage _imageB)	Accessor that sets the reference to imageB.
void	setImageB(ModelImage _imageB, boolean disposeOldB)	Accessor that sets the reference to imageB.
void	setLinkButtonSelected(boolean selected)	Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true
void	setLUTa(ModelLUT LUT)	Accessor that sets the LUT.
void	setLUTb(ModelLUT LUT)	Accessor that sets the LUT.
void	setPaintBitmapSwitch(boolean paintBitmapSwitch)	When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.
void	setPaintColor(Color color)	Sets the color of the paint.
void	setPositionLabels(int x, int y, int z)	Sets the labels which show the absolute position within the image volume and the patient position.
void	setRGBTA(ModelRGB RGBT)	Sets the RGB table for ARGB image A.
void	setRGBTB(ModelRGB RGBT)	Sets the RGB table for image B.
void	setSlice(int slice)	Does nothing.
void	setSlices(int x, int y, int z)	Sets the slice index for each plane in the frame and components.
void	setSlicesFromFrame(int x, int y, int z)	Called from the "normal" image component, sets the slices for the tri planar view to display.
void	setTimeSlice(int slice)	Sets the slice to be displayed and updates title frame.
void	setTimeSlice(int slice, boolean checkedLinkedScroll)	Sets the slice to be displayed and updates title frame.
void	setTitle()	Sets the title bar for the tri-image frame.
void	setTraverseButton()	Sets the traverse button to selected.
void	setVolumeCenter(int x, int y, int z)	Sets the x coordinate of the point to be the center of the transformed image.
void	setVolumeCenter(Point3D newVolumeCenter)	Sets the x coordinate of the point to be the center of the transformed image.
void	startRecording()
void	stateChanged(ChangeEvent e)	Sets values based on knob along time slider.
void	stopRecording()
private void	traverse(File file)
void	updateImage(int index)
boolean	updateImageExtents()	Do nothing - required by ViewJFrameBase.
boolean	updateImages()	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(boolean forceShow)	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(boolean forceShow, int interpMode)	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)	This methods calls the componentImage's update method to redraw the screen.
void	updateImageSubset(ViewJComponentTriImage triImage)	DOCUMENT ME!
private void	updateSlider()
void	windowClosing(WindowEvent event)	Closes window and disposes of frame and component.
void	windowOpened(WindowEvent event)	Does nothing.
protected void	zoomInFrame(int frame)	this method will zoom in a particular frame.
protected void	zoomOutFrame(int frame)	this method will zoom out a particular frame.

Methods inherited from class gov.nih.mipav.view.ViewJFrameTriImage

absoluteGoTo, addCoordinateChangeListener, addSphereVOIs, addTabbedPane, buildDisabledTextButton, buildIconButton, buildImageAlignToolBar, buildLUTs, buildMagToolBar, buildMenu, buildNamedTextButton, buildPaintToolBar, buildProgressBar, buildTImageSliderLabels, buildToggleButton, buildToggleButton, buildToolbarMenu, buildToolbars, buildTriImage, buildVolumePositionPanel, cleanVolumePositionPanel, closeImageB, configureFrame, create3DVOI, doOldLayout, enableBoth, fireCoordinateChange, getActiveImage, getActiveLUT, getActiveRGB, getAxialComponentSlice, getBoundedVolume, getControls, getCoronalComponentSlice, getCurrentOrientation, getCurrentPositionLabels, getOptimalZoom, getSagittalComponentSlice, getSelectedImage, getTriImage, gettTalVoxLabel, getVOIManager, getXSliceHairColor, getYSliceHairColor, getZSliceHairColor, handleLeastSquares, handlePluginPanelSelection, handleTPSpline, init, initProgressBar, initVOI, isFocusable, isMultipleSameSizeTriImages, itemStateChanged, makeSeparator, maskToPaint, paintToShortMask, paintToUbyteMask, PointerActive, PropDown, PropUp, removeControls, removeCoordinateChangeListener, setActiveImage, setAlphaBlend, setControls, setCrop, setCurrentOrientation, setDefault, setImageActiveInTriComponents, setImageSelectorPanelVisible, setIntensityDropper, setIntensityPaintName, setModified, setOldLayout, setPaintMask, setTalairachPositionLabels, settTalVoxLabelText, setXSliceHairColor, setYSliceHairColor, setZSliceHairColor, updateData, updateHistoLUTFrame, updateLayout, updatePaint

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

about, buildLabelPanel, canCloseImageBAfterLoad, close, close, componentHidden, componentMoved, componentResized, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTA, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.ItemListener

itemStateChanged

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

addSphereVOIs, create3DVOI, getActiveImage, getActiveLUT, getActiveRGB, getVOIManager, maskToPaint, paintToShortMask, paintToUbyteMask, PointerActive, PropDown, PropUp, setActiveImage, setModified, setPaintMask, updateData

Field Details

imagesChooser

private JFileChooser imagesChooser

target image variables.

UI

private ViewUserInterface UI

The main user interface.

currentFrame

private ViewJFrameImage currentFrame

imageScroll

private JScrollPane imageScroll

origin

private Point origin

quadImagePanel

private JPanel quadImagePanel

currentSlice

private int currentSlice

zDim

private int[] zDim

comboBoxImage

private JComboBox comboBoxImage

initZoomFactor

private float initZoomFactor

popup

private JPopupMenu popup

sliceNumCache

private int sliceNumCache

serif12

protected Font serif12

serif12B

protected Font serif12B

sliderMax

private JLabel[] sliderMax

zImageSlider

private JSlider[] zImageSlider

slicesTextField

private JTextField[] slicesTextField

imageFrame

private ViewJFrameImage[] imageFrame

imageComp

private ViewJComponentEditImage[] imageComp

imageNames

private String[] imageNames

imageNamesIndex

private int imageNamesIndex

images

private ModelImage[] images

imageActiveIndex

private int imageActiveIndex

sliderPanel

private JPanel sliderPanel

cornerImage

private ImageIcon cornerImage

blackImage

private ImageIcon blackImage

rightPanel

private JPanel rightPanel

leftPanel

private JPanel leftPanel

topPanel

private JPanel topPanel

lowerPanel

private JPanel lowerPanel

label1

private JLabel label1

label2

private JLabel label2

label3

private JLabel label3

label4

private JLabel label4

label5

private JLabel label5

label6

private JLabel label6

label7

private JLabel label7

label8

private JLabel label8

pressed

private boolean pressed

v

static int v

Constructor Details

ViewJFrameMultimodalitySingleViewer

public ViewJFrameMultimodalitySingleViewer(ModelImage _imageA,
 ViewJFrameImage frame)

Method Details

addPopup

public void addPopup()

startRecording

public void startRecording()

stopRecording

public void stopRecording()

getFramesInfo

private void getFramesInfo()

captureComponent

void captureComponent(Component component)

initLayout

private void initLayout()

buildSlider

private void buildSlider(JPanel rightPanel)

updateSlider

private void updateSlider()

mouseWheelMoved

public void mouseWheelMoved(MouseWheelEvent mouseWheelEvent)

Specified by:

mouseWheelMoved in interface MouseWheelListener

buildComboBoxImage

private void buildComboBoxImage()

Builds a list of images to operate on from the template image.

equalScaleImage

public void equalScaleImage()

equalScaleImageLight

public void equalScaleImageLight()

actionPerformed

public void actionPerformed(ActionEvent event)

Calls various methods depending on the action.

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class ViewJFrameTriImage

Parameters:

event - event that triggered function

updateImage

public void updateImage(int index)

disposeLocal

public void disposeLocal()

Should be called when window is closing to perform cleanup.

Overrides:

disposeLocal in class ViewJFrameTriImage

getCenter

public int[] getCenter()

Sets the x coordinate of the point to be the center of the transformed image.

Overrides:

getCenter in class ViewJFrameTriImage

Returns:

DOCUMENT ME!

getCenterPt

public WildMagic.LibFoundation.Mathematics.Vector3f getCenterPt()

Specified by:

getCenterPt in interface VOIManagerInterfaceListener

Overrides:

getCenterPt in class ViewJFrameTriImage

getImageA

public ModelImage getImageA()

Accessor that returns the reference to imageA.

Overrides:

getImageA in class ViewJFrameTriImage

Returns:

image

getImageB

public ModelImage getImageB()

Accessor that returns the reference to imageB.

Overrides:

getImageB in class ViewJFrameTriImage

Returns:

imageB

getLinkedTriFrame

public ViewJFrameTriImage getLinkedTriFrame()

Gets the linked ViewJFrameTriImage.

Overrides:

getLinkedTriFrame in class ViewJFrameTriImage

Returns:

linkedFrame

getParentFrame

public ViewJFrameImage getParentFrame()

Returns a reference to the ViewJFrameImage object that is the parent of this frame.

Overrides:

getParentFrame in class ViewJFrameTriImage

Returns:

a reference to the ViewJFrameImage object that is the parent of this frame

keyPressed

public void keyPressed(KeyEvent e)

keyPressed event method for KeyListener.

Specified by:

keyPressed in interface KeyListener

Overrides:

keyPressed in class ViewJFrameTriImage

Parameters:

e - KeyEvent

keyReleased

public void keyReleased(KeyEvent e)

keyReleased event method for KeyListener.

Specified by:

keyReleased in interface KeyListener

Overrides:

keyReleased in class ViewJFrameTriImage

Parameters:

e - KeyEvent

keyTyped

public void keyTyped(KeyEvent e)

DOCUMENT ME!

Specified by:

keyTyped in interface KeyListener

Overrides:

keyTyped in class ViewJFrameTriImage

Parameters:

e - DOCUMENT ME!

mouseClicked

public void mouseClicked(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseClicked in interface MouseListener

Overrides:

mouseClicked in class ViewJFrameTriImage

Parameters:

event - DOCUMENT ME!

mouseEntered

public void mouseEntered(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseEntered in interface MouseListener

Overrides:

mouseEntered in class ViewJFrameTriImage

Parameters:

event - DOCUMENT ME!

mouseExited

public void mouseExited(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseExited in interface MouseListener

Overrides:

mouseExited in class ViewJFrameTriImage

Parameters:

event - DOCUMENT ME!

mouseMoved

public void mouseMoved(MouseEvent evt)

Specified by:

mouseMoved in interface MouseMotionListener

mouseDragged

public void mouseDragged(MouseEvent e)

Specified by:

mouseDragged in interface MouseMotionListener

mousePressed

public void mousePressed(MouseEvent event)

DOCUMENT ME!

Specified by:

mousePressed in interface MouseListener

Overrides:

mousePressed in class ViewJFrameTriImage

Parameters:

event - DOCUMENT ME!

mouseReleased

public void mouseReleased(MouseEvent event)

DOCUMENT ME!

Specified by:

mouseReleased in interface MouseListener

Overrides:

mouseReleased in class ViewJFrameTriImage

Parameters:

event - DOCUMENT ME!

setActiveImage

public void setActiveImage(int active)

Set the active image for drawing VOIs. VOIs are only drawn in the active image. In addition, algorithms are executed on the active window.

Specified by:

setActiveImage in interface VOIManagerInterfaceListener

Overrides:

setActiveImage in class ViewJFrameTriImage

Parameters:

active - ViewJComponentBase.IMAGE_A or ViewJComponentBase.IMAGE_B

setCenter

public void setCenter(int i,
 int j,
 int k)

sets the crosshair positions and slices for each of the triImages. The inputs are in FileCoordinates, and are passed to the triImages in FileCoordinates. Each triImage converts from FileCoordinates to the local PatientCoordinate space, based on the triImage orientation (FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL).

Overrides:

setCenter in class ViewJFrameTriImage

Parameters:

i - model space coordinate

j - model space coordinate

k - model space coordinate

setCenter

public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)

Specified by:

setCenter in interface VOIManagerInterfaceListener

Overrides:

setCenter in class ViewJFrameTriImage

setCenter

public void setCenter(int i,
 int j,
 int k,
 boolean checkLinkedScroll)

sets the crosshair positions and slices for each of the triImages. The inputs are in FileCoordinates, and are passed to the triImages in FileCoordinates. Each triImage converts from FileCoordinates to the local PatientCoordinate space, based on the triImage orientation (FileInfoBase.AXIAL, FileInfoBase.CORONAL, FileInfoBase.SAGITTAL).

Overrides:

setCenter in class ViewJFrameTriImage

Parameters:

i - model space coordinate

j - model space coordinate

k - model space coordinate

checkLinkedScroll - (boolean telling whether to look for linked images to sync scroll... necessary to avoid infinite loop)

setEnabled

public void setEnabled(boolean flag)

Controls whether or not the images/VOIs of the frame can be modified.

Overrides:

setEnabled in class ViewJFrameTriImage

Parameters:

flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified

setImageA

public void setImageA(ModelImage image)

Changes imageA to a new model image reference. Swaps the references in the frame and all the component images.

Overrides:

setImageA in class ViewJFrameTriImage

Parameters:

image - the new image to use

setImageB

public void setImageB(ModelImage _imageB)

Accessor that sets the reference to imageB. Includes changing the frame's reference and the references the components keep.

Overrides:

setImageB in class ViewJFrameTriImage

Parameters:

_imageB - image to set the frame to

setImageB

public void setImageB(ModelImage _imageB,
 boolean disposeOldB)

Accessor that sets the reference to imageB. Includes changing the frame's reference and the references the components keep. Unlike setImageB(ModelImage) this method matches the functionality of setImageA(ModelImage)

Overrides:

setImageB in class ViewJFrameTriImage

Parameters:

_imageB - image to set the frame to

setLUTa

public void setLUTa(ModelLUT LUT)

Accessor that sets the LUT.

Overrides:

setLUTa in class ViewJFrameTriImage

Parameters:

LUT - the LUT

setLUTb

public void setLUTb(ModelLUT LUT)

Accessor that sets the LUT.

Overrides:

setLUTb in class ViewJFrameTriImage

Parameters:

LUT - the LUT

setPaintBitmapSwitch

public void setPaintBitmapSwitch(boolean paintBitmapSwitch)

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image Currenlty unused.

Overrides:

setPaintBitmapSwitch in class ViewJFrameTriImage

Parameters:

paintBitmapSwitch - if true don't do a getMask on the new actve image

setPaintColor

public void setPaintColor(Color color)

Sets the color of the paint.

Overrides:

setPaintColor in class ViewJFrameTriImage

Parameters:

color - Color the desired color of the paint

setPositionLabels

public void setPositionLabels(int x,
 int y,
 int z)

Sets the labels which show the absolute position within the image volume and the patient position.

Overrides:

setPositionLabels in class ViewJFrameTriImage

Parameters:

x - the x volume coordinate

y - the y volume coordinate

z - the z volume coordinate

setRGBTA

public void setRGBTA(ModelRGB RGBT)

Sets the RGB table for ARGB image A.

Overrides:

setRGBTA in class ViewJFrameTriImage

Parameters:

RGBT - the new RGB transfer functions for imageA

setRGBTB

public void setRGBTB(ModelRGB RGBT)

Sets the RGB table for image B.

Overrides:

setRGBTB in class ViewJFrameTriImage

Parameters:

RGBT - the new RGB transfer functions for imageB

setLinkButtonSelected

public void setLinkButtonSelected(boolean selected)

Sets whether the linking button should be set for this image, implies that this image will be linked to another tri-frame when true

Overrides:

setLinkButtonSelected in class ViewJFrameTriImage

setSlice

public void setSlice(int slice)

Does nothing.

Specified by:

setSlice in interface ViewImageUpdateInterface

Overrides:

setSlice in class ViewJFrameTriImage

Parameters:

slice - the slice to show

setSlices

public void setSlices(int x,
 int y,
 int z)

Sets the slice index for each plane in the frame and components. Should be zero indexed.

Overrides:

setSlices in class ViewJFrameTriImage

Parameters:

x - slice index in the patient

y - slice index in the patient

z - slice index in the patient

setSlicesFromFrame

public void setSlicesFromFrame(int x,
 int y,
 int z)

Called from the "normal" image component, sets the slices for the tri planar view to display. Parameters are in terms of the image volume and so must be converted.

Overrides:

setSlicesFromFrame in class ViewJFrameTriImage

Parameters:

x - X Slice of image.

y - Y Slice of image.

z - Z Slice of image.

setTimeSlice

public void setTimeSlice(int slice)

Sets the slice to be displayed and updates title frame.

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Overrides:

setTimeSlice in class ViewJFrameTriImage

Parameters:

slice - indicates image time-slice (4th dimension) to be displayed

setTimeSlice

public void setTimeSlice(int slice,
 boolean checkedLinkedScroll)

Sets the slice to be displayed and updates title frame.

Overrides:

setTimeSlice in class ViewJFrameTriImage

Parameters:

slice - indicates image time-slice (4th dimension) to be displayed

checkedLinkedScroll - whether corresponding tri-frames should also be scrolled

setTitle

public void setTitle()

Sets the title bar for the tri-image frame. Called for initialization and updating. Displays time series location for 4D volumes.

Overrides:

setTitle in class ViewJFrameTriImage

setTraverseButton

public void setTraverseButton()

Sets the traverse button to selected.

Overrides:

setTraverseButton in class ViewJFrameTriImage

setVolumeCenter

public void setVolumeCenter(Point3D newVolumeCenter)

Sets the x coordinate of the point to be the center of the transformed image.

Overrides:

setVolumeCenter in class ViewJFrameTriImage

Parameters:

newVolumeCenter - The x coordinate of the center.

setVolumeCenter

public void setVolumeCenter(int x,
 int y,
 int z)

Sets the x coordinate of the point to be the center of the transformed image.

Overrides:

setVolumeCenter in class ViewJFrameTriImage

Parameters:

x - The x coordinate of the center.

y - DOCUMENT ME!

z - DOCUMENT ME!

stateChanged

public void stateChanged(ChangeEvent e)

Sets values based on knob along time slider.

Specified by:

stateChanged in interface ChangeListener

Overrides:

stateChanged in class ViewJFrameTriImage

Parameters:

e - Event that triggered this function

updateImageExtents

public boolean updateImageExtents()

Do nothing - required by ViewJFrameBase.

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Overrides:

updateImageExtents in class ViewJFrameTriImage

Returns:

always false

See Also:

• ViewImageUpdateInterface

updateImages

public boolean updateImages()

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Overrides:

updateImages in class ViewJFrameTriImage

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(boolean forceShow)

This methods calls the componentImage's update method to redraw the screen. Without LUT changes.

Specified by:

updateImages in interface ViewImageUpdateInterface

Overrides:

updateImages in class ViewJFrameTriImage

Parameters:

forceShow - forces show to reimport image and calc. java image

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(boolean forceShow,
 int interpMode)

This methods calls the componentImage's update method to redraw the screen. Without LUT changes.

Overrides:

updateImages in class ViewJFrameTriImage

Parameters:

forceShow - forces show to reimport image and calc. java image

interpMode -

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean forceShow,
 int interpMode)

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Overrides:

updateImages in class ViewJFrameTriImage

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

forceShow - forces show to reimport image and calc. java image

interpMode - image interpolation method (Nearest or Smooth)

Returns:

boolean confirming successful update

updateImageSubset

public void updateImageSubset(ViewJComponentTriImage triImage)

DOCUMENT ME!

Overrides:

updateImageSubset in class ViewJFrameTriImage

Parameters:

triImage - DOCUMENT ME!

windowClosing

public void windowClosing(WindowEvent event)

Closes window and disposes of frame and component.

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class ViewJFrameTriImage

Parameters:

event - Event that triggered function

windowOpened

public void windowOpened(WindowEvent event)

Description copied from class: ViewJFrameBase

Does nothing.

Specified by:

windowOpened in interface WindowListener

Overrides:

windowOpened in class ViewJFrameTriImage

Parameters:

event - the window event

buildActiveImagePanel

protected void buildActiveImagePanel()

Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.

Overrides:

buildActiveImagePanel in class ViewJFrameTriImage

finalize

protected void finalize()
                 throws Throwable

DOCUMENT ME!

Overrides:

finalize in class ViewJFrameTriImage

Throws:

Throwable - DOCUMENT ME!

adjustScrollbars

private void adjustScrollbars(int x,
 int y,
 JScrollPane scrollPane)

DOCUMENT ME!

Parameters:

x - DOCUMENT ME!

y - DOCUMENT ME!

scrollPane - DOCUMENT ME!

zoomInFrame

protected void zoomInFrame(int frame)

this method will zoom in a particular frame.

Overrides:

zoomInFrame in class ViewJFrameTriImage

Parameters:

frame - frame the frame number

zoomOutFrame

protected void zoomOutFrame(int frame)

this method will zoom out a particular frame.

Overrides:

zoomOutFrame in class ViewJFrameTriImage

Parameters:

frame - frame the frame number

getFrame

public JFrame getFrame()

Specified by:

getFrame in interface VOIManagerInterfaceListener

Overrides:

getFrame in class ViewJFrameTriImage

setCursor

public void setCursor(Cursor kCursor)

Specified by:

setCursor in interface VOIManagerInterfaceListener

Overrides:

setCursor in class ViewJFrameTriImage

invokeMeasure

public void invokeMeasure()

readMultlmodalImages

private void readMultlmodalImages()

File chooser to select target image directory.

readImages

private void readImages(File dir)

traverse

private void traverse(File file)

changeIcon

private void changeIcon(String whiteCicleName,
 String blackCircleName)