Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmComplexConcat

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmComplexConcat
extends AlgorithmBase

Simple algorithm that generates a complex image from real data and imaginary data.

Author:

Justin Senseney

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
boolean	commonMapping	If true, map all colors based on image min and max.
private int	dataType	ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT
private ModelImage	destImage	Destination image where results are to be stored.
private boolean	performBoundsChecking	flag for performing bounds checking...normally should be set to true unless negative numbers are desired
private boolean	reMap	Flag indicating whether of not to remap the data.
private float	remapHighestValue
private ModelImage	srcImageB	Source gray scale image to be stored in the BLUE channel.
private ModelImage	srcImageG	Source gray scale image to be stored in the GREEN channel.
private ModelImage	srcImageR	Source gray scale image to be stored in the RED channel.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmComplexConcat(ModelImage srcImgR, ModelImage srcImgG, ModelImage srcImgB, int dataType, boolean remap, boolean commonMapping, float remapHighestValue, boolean performBoundsChecking)	Creates a new AlgorithmRGBConcat object.
AlgorithmComplexConcat(ModelImage srcImgR, ModelImage srcImgG, ModelImage srcImgB, ModelImage destImg, boolean remap, boolean commonMapping, float remapHighestValue, boolean performBoundsChecking)	Creates a new AlgorithmRGBConcat object.

Method Summary

Modifier and Type	Method	Description
private void	calcStoreInDest()	Concatenate the image and store the results in the destination image.
private void	calcStoreInPlace()	Concatenate the image Must run getImageR after running this routine.
void	finalize()	Prepares this class for destruction.
ModelImage	getImageR()	Accessor to get imageR.
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

destImage

private ModelImage destImage

Destination image where results are to be stored. Must be of type RGB.

reMap

private boolean reMap

Flag indicating whether of not to remap the data. If true and srcImage data max is < remapHighestValue data will be remapped [0-remapHighestValue] else if image max > remapHighestValue data will automatically be remapped [0-remapHighestValue].

commonMapping

public boolean commonMapping

If true, map all colors based on image min and max. If false, map each color separately based on its own min and max.

remapHighestValue

private float remapHighestValue

srcImageB

private ModelImage srcImageB

Source gray scale image to be stored in the BLUE channel.

srcImageG

private ModelImage srcImageG

Source gray scale image to be stored in the GREEN channel.

srcImageR

private ModelImage srcImageR

Source gray scale image to be stored in the RED channel.

performBoundsChecking

private boolean performBoundsChecking

flag for performing bounds checking...normally should be set to true unless negative numbers are desired

dataType

private int dataType

ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT

Constructor Detail

AlgorithmComplexConcat

public AlgorithmComplexConcat(ModelImage srcImgR,
                              ModelImage srcImgG,
                              ModelImage srcImgB,
                              int dataType,
                              boolean remap,
                              boolean commonMapping,
                              float remapHighestValue,
                              boolean performBoundsChecking)

Creates a new AlgorithmRGBConcat object.

Parameters:

srcImgR - image model where result image of the Red channel is to be stored

srcImgG - image model where result image of the Green channel is to be stored

srcImgB - image model where result image of the Blue channel is to be stored

dataType - Tells if srcImage will become ARGB, ARGB_USHORT, ARGB_UINTEGER, or ARGB_FLOAT

remap - if true and srcImage data max is < remapHighestValue data will be remapped [0-remapHighestValue] else if image max > remapHighestValue data will automatically be remapped [0-remapHighestValue].

commonMapping -

remapHighestValue - The highest value that will occur if remapping occurs

performBoundsChecking - flag for performing bounds checking...normally should be set to true unless negative numbers are desired

AlgorithmComplexConcat

public AlgorithmComplexConcat(ModelImage srcImgR,
                              ModelImage srcImgG,
                              ModelImage srcImgB,
                              ModelImage destImg,
                              boolean remap,
                              boolean commonMapping,
                              float remapHighestValue,
                              boolean performBoundsChecking)

Creates a new AlgorithmRGBConcat object.

Parameters:

srcImgR - image model where result image of the Red channel is to be stored

srcImgG - image model where result image of the Green channel is to be stored

srcImgB - image model where result image of the Blue channel is to be stored

destImg - destination image image model

remap - if true and srcImage data max is < remapHighestValue data will be remapped [0-remapHighestValue] else if image max > remapHighestValue data will automatically be remapped [0-remapHighestValue].

commonMapping -

remapHighestValue - The highest value that will occur if remapping occurs * @param performBoundsChecking flag for performing bounds checking...normally should be set to true unless negative numbers are desired

Method Detail

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

getImageR

public ModelImage getImageR()

Accessor to get imageR.

Returns:

DOCUMENT ME!

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

calcStoreInDest

private void calcStoreInDest()

Concatenate the image and store the results in the destination image.

calcStoreInPlace

private void calcStoreInPlace()

Concatenate the image Must run getImageR after running this routine.