java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        gov.nih.mipav.view.ViewJFrameBase
        
        gov.nih.mipav.view.ViewJFrameImage

All Implemented Interfaces:

VOIManagerInterfaceListener, ViewImageUpdateInterface, ViewOpenFrameInterface, java.awt.event.ActionListener, java.awt.event.ComponentListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants

Direct Known Subclasses:

ViewJFrameFastMarching2, ViewJFrameFastMarching3
```
public class ViewJFrameImage
extends ViewJFrameBase
implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, ViewOpenFrameInterface, VOIManagerInterfaceListener
```
Makes a frame and put a single image component into it.

Version:

1.0 Sept 28, 1998

Author:

Matthew J. McAuliffe, Ph.D.

See Also:

ViewJComponentEditImage, Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`private class`	`ViewJFrameImage.DicomQueryListener`
`(package private) class`	`ViewJFrameImage.OkColorListener`	Pick up the selected color and call method to change the VOI color.

Nested classes/interfaces inherited from class javax.swing.JFrame
javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame
java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private ViewJColorChooser`	`colorChooser`	Reference to the color chooser.
`protected ViewJComponentEditImage`	`componentImage`	Object where DICOM image, ... is converted and displayed as a Java image
`protected ViewControlsImage`	`controls`	Reference to the toolbars located in the controls object.
`private boolean`	`doOrients`	DOCUMENT ME!
`private boolean`	`doOrigins`	When loading an image into B slot, should origins and orients be matched?
`private JDialogDataProvenance`	`dpDialog`	Data provenance dialog
`private JDialogGridOptions`	`gridOptions`	Only want one gridoptions dialog per jframeimage.
`protected float`	`heightResFactor`	Storage for correction parameters where datasets have non isotropic values.
`protected float[]`	`imageBufferA`	Buffer used to store image intensities the presently viewed slice of image A.
`protected float[]`	`imageBufferB`	Buffer used to store image intensities the presently viewed slice of image B.
`protected JDialogImageInfo`	`infoDialogA`	reference to the JDialogImageInfo for updating slice/resolutions.
`protected JDialogImageInfo`	`infoDialogB`	DOCUMENT ME!
`private boolean`	`isShiftDown`	boolean indicating if shift button is down.
`protected boolean`	`logMagDisplay`	Flag indicating whether or not that the image should be displayed in Log scale.
`protected javax.swing.JMenuBar`	`menuBar`	Reference to the frame's menu bar.
`protected ViewMenuBar`	`menuBarMaker`	Constructs the image menu bar.
`protected ViewMenuBuilder`	`menuBuilder`	This object contains a number of useful functions for building a menu and querying the state of menu items.
`protected JDialogMultiPaint`	`multipaintDialog`	reference to the JDialogMultiPaint for shortcuts
`protected int`	`nImage`	Number of slices in a 3D dataset.
`protected int`	`nTImage`	Number of time sequences in a 4D dataset.
`private boolean`	`paintBrushLocked`	used in conjuction with the above variable, stating that the paint brush has been changed but will change back to previous.
`protected int[]`	`pixBuffer`	Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
`protected int[]`	`pixBufferB`	Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
`private JDialogAAMClassification`	`prostateAAMClassification`
`private JDialogAAMplusSVM`	`prostateML`
`private int`	`quickPaintBrushIndex`	DOCUMENT ME!
`protected float[]`	`resols`	Storage of the image voxel resolutions.
`protected javax.swing.JScrollPane`	`scrollPane`	The scrollPane where the image is displayed.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`protected int[]`	`units`	Storage of the resolution units of measure.
`protected javax.swing.ButtonGroup`	`VOIGroup`
`protected VOIManagerInterface`	`voiManager`
`protected javax.swing.JMenu`	`voiMenu`
`protected float`	`widthResFactor`	Storage for correction parameters where datasets have non isotropic values.
`protected JDialogWinLevel[]`	`windowLevel`	Reference to the two window and level dialogs where [0] is for imageA, [1] for imageB.
`protected static int`	`xScreen`	Width of the display screen.
`protected static int`	`yScreen`	Height of the display screen.
`protected float`	`zoom`	Defaults magnification of image to 1.
`private JDialogZoom`	`zoomDialog`	Reference to the magnification tool.

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`ViewJFrameImage(ModelImage _imageA)`	Makes a frame and puts an image into it.
`ViewJFrameImage(ModelImage _imageA, ModelImage _imageB)`	Makes a frame and puts an image component into it, does not display the frame through ViewJFrameImage's init() method.
`ViewJFrameImage(ModelImage _imageA, ModelLUT LUTa)`	Makes a frame and puts an image into it.
`ViewJFrameImage(ModelImage _imageA, ModelLUT LUTa, java.awt.Dimension loc)`	Makes a frame and puts an image component into it.
`ViewJFrameImage(ModelImage _imageA, ModelLUT LUTa, java.awt.Dimension loc, boolean logMagDisplay)`	Makes a frame and puts an image component into it.
`ViewJFrameImage(ModelSimpleImage simpleImage, java.lang.String name)`	Constructs a ModelSimpleImage VJF

Method Summary

All Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method	Description
`private void`	`aamClassification()`
`private void`	`aamGroupRename()`
`private void`	`aamGroups()`
`private void`	`aamMLClassification()`
`void`	`about()`	Makes an aboutDialog box and displays information of the image plane presently being displayed.
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	calls various methods depending on the action.
`void`	`addSphereVOIs(VOI annotations)`
`private void`	`adjustScrollbars(int x, int y)`	DOCUMENT ME!
`void`	`changeMenuEnables()`	Routine to enable some menu items and disable othter menu items when the dimensionality or type of the image is changed.
`private boolean`	`checkForActiveVOIs()`
`void`	`close()`	Closes window and disposes of frame and component.
`void`	`close(boolean closeAll)`	Closes window and disposes of frame and component.
`void`	`collapseAlltoSinglePaint(boolean showProgressBar)`	This method is provided for the user to convert a masked area back to a painted area.
`void`	`componentResized(java.awt.event.ComponentEvent event)`	Resizes frame and all components.
`protected void`	`computeIdealWindowSize()`	private void computeIdealWindowSize() This method will enlarge or shrink the window size in response to the componentImage being zoomed.
`private void`	`convertVOITBI()`
`void`	`create3DVOI(boolean bIntersection)`
`protected int[]`	`createBuffers()`	Create the buffers for imageA and imageB.
`void`	`decSlice()`	Decreases the slice to be displayed by one and updates title frame.
`void`	`decSliceEyeTracker()`
`private void`	`deepCNNConvert()`
`private void`	`deepCNNMap()`
`private void`	`deepCNNTest()`
`private void`	`deepCNNTrain()`
`private void`	`deepKneesAtlas()`
`private void`	`deepKneesMap()`
`void`	`doLinkedScrolling(int offset)`
`void`	`enableImageB(boolean enable)`	Quick and simple way for ViewJFrameBase to tell the ViewJFrameImage it created to set the menu (right now only for 2Dimensional) for image B.
`private void`	`extractCEFeature()`
`void`	`finalize()`	Cleans memory.
`private void`	`generateAtlasImage()`	Read the 3D atlas images directory, convert each 3D image to 2D slices based atlas.
`private void`	`generateEndingSlices()`
`ModelImage`	`getActiveImage()`	Returns the reference to the currently active image.
`protected JDialogImageInfo`	`getActiveImageInfoDialog()`	Returns a reference to the image info dialog for the active image.
`ModelLUT`	`getActiveLUT()`
`ModelRGB`	`getActiveRGB()`
`float`	`getAlphaBlend()`	Returns the alphaBlend value for blending between imageA and imageB.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getCenterPt()`
`ViewJComponentEditImage`	`getComponentImage()`	Returns the reference to the component image.
`ViewControlsImage`	`getControls()`	Get control widgets (toolbars, sliders) for the image frame.
`javax.swing.JFrame`	`getFrame()`
`int`	`getFrameHeight()`	Return the height that the frame should have.
`int[]`	`getFrameLandMarkPoints()`	Get the frame four corner landmark points.
`java.awt.Dimension`	`getFrameSize()`	Return the preferred size for the frame.
`java.awt.Dimension`	`getFrameSize(java.awt.Dimension size)`	Return the preferred size for the frame.
`int`	`getFrameWidth()`	Return the width that the frame should have.
`ModelImage`	`getImageA()`	Returns the reference to imageA.
`ModelImage`	`getImageB()`	Returns the reference to imageB.
`protected JDialogImageInfo`	`getImageInfoDialogB()`	Returns the image info dialog for image B.
`javax.swing.JMenuBar`	`getJMenuBar()`
`java.util.Vector<ModelImage>`	`getRegisteredFramedImages(ModelImage activeImage)`	Returns the Vector of Registered Framed Images that are of the same number of dimensions as the active image and same extents for dimesions 3, 4, and 5.
`java.util.Vector<ModelImage>`	`getRegisteredFramedImages4D3D(ModelImage activeImage)`	If active image is 4D, this returns all 3d images that have same x,y,and z dimensionality as the 4d image
`int`	`getRegisteredFramedImagesSize()`	Returns the size of the RegisteredFramedImages Vector.
`ModelRGB`	`getRGBTA()`	Gets the RGB LUT table for ARGB image A.
`ModelRGB`	`getRGBTB()`	Gets the RGB LUT table for ARGB image B.
`javax.swing.JScrollPane`	`getScrollPane()`	DOCUMENT ME!
`protected int`	`getScrollPaneHeight()`	Get the height of the scroll pane holding the component image.
`protected java.awt.Dimension`	`getScrollPaneSize()`	Get the size of the scroll pane holding the component image.
`java.awt.Dimension`	`getScrollPaneSize(java.awt.Dimension size)`	Return the preferred size for the component image scroll pane.
`protected int`	`getScrollPaneWidth()`	Get the width of the scroll pane holding the component image.
`int`	`getViewableSlice()`	Get the top-most slice.
`int`	`getViewableTimeSlice()`	Gets the current Time slice which is being viewed.
`ViewMenuBar`	`getViewMenuBar()`
`VOIManagerInterface`	`getVOIManager()`
`boolean`	`handleMaskToPaint(boolean showProgressBar)`	This method is provided for the user to convert a masked area back to a painted area.
`private void`	`hedCNNMap()`
`void`	`incSlice()`	Increases the slice to be displayed by one and updates title frame.
`void`	`incSliceEyeTracker()`
`private void`	`init(ModelLUT LUTa, java.awt.Dimension loc, boolean logMagDisplay)`	Initializes the frame and variables.
`protected void`	`initComponentImage(int[] extents)`	Creates and initializes the component image for the given image.
`void`	`initExtentsVariables(ModelImage img)`	Initializes the variables based on the image extents.
`protected void`	`initLUT()`	Creates and initializes the LUT for the first image (`imageA`) if it hasn't been already.
`void`	`initResolutions()`	Initializes the resolutions and units from the image.
`protected void`	`initVOI()`	Initialize the 3D VOI interface.
`void`	`initZoom()`	Initializes the zoom variables for the first image (imageA).
`private boolean`	`isMultipleImages()`	Helper method to establish if there are other images so that a dialog can be created.
`private boolean`	`isMultipleSameSizeImages(boolean isForCalculator)`	Helper method to establish if there are images of the same dimensionality so that a dialog can be created.
`void`	`keyPressed(java.awt.event.KeyEvent e)`	******************************************************************* ************************ Key Events * **************************
`void`	`keyReleased(java.awt.event.KeyEvent e)`	DOCUMENT ME!
`void`	`keyTyped(java.awt.event.KeyEvent e)`	DOCUMENT ME!
`private void`	`loadProstateMask()`
`protected java.lang.String`	`makeTitle()`	Constructs the title of the frame with the image name and the slice location.
`void`	`maskToPaint()`
`void`	`mouseClicked(java.awt.event.MouseEvent event)`	DOCUMENT ME!
`void`	`mouseDragged(java.awt.event.MouseEvent e)`	DOCUMENT ME!
`void`	`mouseEntered(java.awt.event.MouseEvent event)`	DOCUMENT ME!
`void`	`mouseExited(java.awt.event.MouseEvent event)`	DOCUMENT ME!
`void`	`mouseMoved(java.awt.event.MouseEvent e)`	DOCUMENT ME!
`void`	`mousePressed(java.awt.event.MouseEvent event)`	DOCUMENT ME!
`void`	`mouseReleased(java.awt.event.MouseEvent event)`	DOCUMENT ME!
`ViewJFrameImage`	`openFrame(ModelImage image)`	ViewOpenFrameInterface function to create a new frame from a result image (jdialog produced)
`void`	`paintToShortMask()`
`void`	`paintToUbyteMask()`
`void`	`PointerActive(boolean bActive)`
`void`	`printImage()`	Method to send an image to the printer.
`private void`	`propagatePaintToAllSlices()`	DOCUMENT ME!
`private void`	`propagatePaintToNextSlice()`	DOCUMENT ME!
`private void`	`propagatePaintToPreviousSlice()`	DOCUMENT ME!
`WildMagic.LibFoundation.Mathematics.Vector3f`	`PropDown(int iActive)`
`WildMagic.LibFoundation.Mathematics.Vector3f`	`PropUp(int iActive)`
`private void`	`prostateSemiAutoBSpline()`
`private void`	`prostateSemiAutoBSplineFuzzyC()`
`private void`	`reconstructSurfaceFromVOIs()`	Reconstruct the prostate surface from the coarse VOIs cloudy points.
`void`	`removeComponentListener()`
`void`	`removeControls()`	Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
`void`	`removeKeyListener()`
`void`	`removeMouseListener()`
`void`	`removeMouseMotionListener()`
`void`	`removeWindowListener()`
`void`	`saveImageInfo()`	Saves the image info; need to do before saving image.
`private void`	`saveMergedVOIs()`	This method merges the 3 axial, sagittal, coronal VOIs and save them into one cloudy points file.
`private void`	`saveProstateBoundaryFeature()`
`private void`	`saveProstateFeatures()`
`private void`	`saveProstateFeatures2D()`
`void`	`setActiveImage(int active)`	Sets the active image for drawing VOIs.
`void`	`setActiveImage(ModelImage kImage)`
`void`	`setAlphaBlend(int value)`	Sets the alpha blending of parameter for two image displaying.
`boolean`	`setAndLoad(ModelImage image2load)`	DOCUMENT ME!
`boolean`	`setAndLoad(ModelImage image2load, boolean doOrigins, boolean doOrients, double defaultValue, double defaultRed, double defaultGreen, double defaultBlue)`	DOCUMENT ME!
`void`	`setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)`
`void`	`setControls()`	Sets the menu and controls (i.e. toolbars) of the main frame!
`void`	`setCursor(java.awt.Cursor kCursor)`
`void`	`setEnabled(boolean flag)`	Controls whether or not the images/VOIs of the frame can be modified.
`void`	`setImageB(ModelImage _imageB)`	Sets the reference to imageB.
`void`	`setLUTa(ModelLUT LUT)`	Sets the LUT for image A.
`void`	`setLUTb(ModelLUT LUT)`	Sets the LUT for image B.
`void`	`setModified()`
`void`	`setOutputWindowBox(boolean isShown)`	Updates the checkbox to show whether or not the output window is currently displayed.
`void`	`setPaintBitmapSwitch(boolean paintBitmapSwitch)`	When switching the active image, copy the paintBitmap of the previous active image into the paintBitmap of the new active image.
`void`	`setPaintMask(java.util.BitSet mask)`
`void`	`setRGBTA(ModelRGB RGBT)`	Sets the RGB LUT table for ARGB image A.
`void`	`setRGBTB(ModelRGB RGBT)`	Sets the RGB LUT table for ARGB image B.
`void`	`setShiftDown(boolean isShiftDown)`	DOCUMENT ME
`void`	`setSlice(int slice)`	Sets the slice to be displayed and updates title frame.
`void`	`setSlice(int slice, boolean updateLinkedImages)`	DOCUMENT ME!
`void`	`setTimeSlice(int slice)`	Sets the slice to be displayed and updates title frame.
`void`	`setTimeSlice(int slice, boolean checkScroll)`	Sets the slice to be displayed and updates title frame.
`void`	`setTitle()`	Sets the title of the frame with the image name and the slice location.
`boolean`	`setZoomB()`	Sets the magnification of Image B.
`void`	`setZoomDialogNull()`	Sets the magnification dialog to null.
`void`	`showEditImageInfo()`	DOCUMENT ME!
`void`	`stateChanged(javax.swing.event.ChangeEvent event)`	DOCUMENT ME!
`private void`	`surfaceReconstructionTBI()`
`protected boolean`	`testParameter(java.lang.String str, double minValue, double maxValue)`	Tests that the entered parameter is in range.
`private void`	`testProstateBoundaryFeatureTrain()`
`void`	`testProstateFeatures()`
`private void`	`testProstateFeatures2D()`
`private void`	`testProstateFeaturesClassification()`
`private void`	`testProstateFeaturesTrain()`
`void`	`triPlanarClosing()`	DOCUMENT ME!
`void`	`updateData()`
`void`	`updateFrame(float sX, float sY)`	Updates the this frame's size the components sizes.
`void`	`updateFrame(float sX, float sY, int x, int y)`	public void updateFrame(float xZoom, float yZoom, int x, int y) This method is called when the user is zooming in or out.
`protected void`	`updateHistoLUTFrame(int imageAorB)`	Deprecated.
`protected void`	`updateHistoLUTFrame(int imageAorB, ViewJComponentEditImage compImg)`	Deprecated.
`protected void`	`updateHistoRGBFrame(int imageAorB)`	Deprecated.
`protected void`	`updateHistoRGBFrame(int imageAorB, ViewJComponentEditImage compImg)`	Deprecated.
`boolean`	`updateImageExtents()`	This methods calls the componentImage's REPAINT method to redraw the screen.
`boolean`	`updateImages()`	This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
`boolean`	`updateImages(boolean forceShow)`	This methods calls the componentImage's update method to redraw the screen.
`boolean`	`updateImages(boolean forceShow, int interpMode)`	This methods calls the componentImage's update method to redraw the screen.
`boolean`	`updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)`	This methods calls the componentImage's update method to redraw the screen.
`void`	`updateMenubar()`	This method updates the menubar; ie: after an image has been opened.
`void`	`updateWinLevel(int min, int max)`	Update the window level sliders from the CT preset dialog.
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Closes window and disposes of frame and component.

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase
about, buildLabelPanel, canCloseImageBAfterLoad, closeImageB, componentHidden, componentMoved, componentShown, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - xScreen
```
protected static final int xScreen
```
    Width of the display screen.
  - yScreen
```
protected static final int yScreen
```
    Height of the display screen.
  - componentImage
```
protected ViewJComponentEditImage componentImage
```
    Object where DICOM image, ... is converted and displayed as a Java image
  - controls
```
protected ViewControlsImage controls
```
    Reference to the toolbars located in the controls object.
  - heightResFactor
```
protected float heightResFactor
```
    Storage for correction parameters where datasets have non isotropic values.
  - imageBufferA
```
protected float[] imageBufferA
```
    Buffer used to store image intensities the presently viewed slice of image A.
  - imageBufferB
```
protected float[] imageBufferB
```
    Buffer used to store image intensities the presently viewed slice of image B.
  - infoDialogA
```
protected JDialogImageInfo infoDialogA
```
    reference to the JDialogImageInfo for updating slice/resolutions.
  - infoDialogB
```
protected JDialogImageInfo infoDialogB
```
    DOCUMENT ME!
  - logMagDisplay
```
protected boolean logMagDisplay
```
    Flag indicating whether or not that the image should be displayed in Log scale. Used primarily for displaying the FFT of an image.
  - menuBar
```
protected javax.swing.JMenuBar menuBar
```
    Reference to the frame's menu bar.
  - menuBarMaker
```
protected ViewMenuBar menuBarMaker
```
    Constructs the image menu bar.
  - menuBuilder
```
protected ViewMenuBuilder menuBuilder
```
    This object contains a number of useful functions for building a menu and querying the state of menu items.
  - nImage
```
protected int nImage
```
    Number of slices in a 3D dataset.
  - nTImage
```
protected int nTImage
```
    Number of time sequences in a 4D dataset.
  - pixBuffer
```
protected int[] pixBuffer
```
    Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data. The ARGB values are generated by using the imageA intensities as a index into a LUT.
  - pixBufferB
```
protected int[] pixBufferB
```
    Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data. The ARGB values are generated by using the imageB intensities as a index into a LUT.
  - resols
```
protected float[] resols
```
    Storage of the image voxel resolutions. One resolution value per dimension.
  - scrollPane
```
protected javax.swing.JScrollPane scrollPane
```
    The scrollPane where the image is displayed.
  - units
```
protected int[] units
```
    Storage of the resolution units of measure. For example, mm, cm, inches ...
  - widthResFactor
```
protected float widthResFactor
```
    Storage for correction parameters where datasets have non isotropic values.
  - windowLevel
```
protected JDialogWinLevel[] windowLevel
```
    Reference to the two window and level dialogs where [0] is for imageA, [1] for imageB.
  - zoom
```
protected float zoom
```
    Defaults magnification of image to 1.
  - colorChooser
```
private ViewJColorChooser colorChooser
```
    Reference to the color chooser.
  - doOrients
```
private final boolean doOrients
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - doOrigins
```
private final boolean doOrigins
```
    When loading an image into B slot, should origins and orients be matched?
    
    See Also:
    
    Constant Field Values
  - gridOptions
```
private JDialogGridOptions gridOptions
```
    Only want one gridoptions dialog per jframeimage.
  - isShiftDown
```
private boolean isShiftDown
```
    boolean indicating if shift button is down.
  - paintBrushLocked
```
private boolean paintBrushLocked
```
    used in conjuction with the above variable, stating that the paint brush has been changed but will change back to previous.
  - quickPaintBrushIndex
```
private int quickPaintBrushIndex
```
    DOCUMENT ME!
  - zoomDialog
```
private JDialogZoom zoomDialog
```
    Reference to the magnification tool.
  - dpDialog
```
private JDialogDataProvenance dpDialog
```
    Data provenance dialog
  - multipaintDialog
```
protected JDialogMultiPaint multipaintDialog
```
    reference to the JDialogMultiPaint for shortcuts
  - VOIGroup
```
protected javax.swing.ButtonGroup VOIGroup
```
  - voiMenu
```
protected javax.swing.JMenu voiMenu
```
  - voiManager
```
protected VOIManagerInterface voiManager
```
  - prostateAAMClassification
```
private JDialogAAMClassification prostateAAMClassification
```
  - prostateML
```
private JDialogAAMplusSVM prostateML
```
- Constructor Detail
  - ViewJFrameImage
```
public ViewJFrameImage(ModelImage _imageA)
```
    Makes a frame and puts an image into it. Image will be centered on screen.
    
    Parameters:
    
    _imageA - ModelImage - first image to display
  - ViewJFrameImage
```
public ViewJFrameImage(ModelImage _imageA,
                       ModelLUT LUTa)
```
    Makes a frame and puts an image into it. Image will be centered on screen.
    
    Parameters:
    
    _imageA - ModelImage - first image to display
    
    LUTa - LUT of the imageA (if null grayscale LUT is constructed)
  - ViewJFrameImage
```
public ViewJFrameImage(ModelImage _imageA,
                       ModelLUT LUTa,
                       java.awt.Dimension loc)
```
    Makes a frame and puts an image component into it.
    
    Parameters:
    
    _imageA - First image to display
    
    LUTa - LUT of the imageA (if null grayscale LUT is constructed)
    
    loc - location where image should be initially placed
  - ViewJFrameImage
```
public ViewJFrameImage(ModelImage _imageA,
                       ModelImage _imageB)
```
    Makes a frame and puts an image component into it, does not display the frame through ViewJFrameImage's init() method.
    
    Parameters:
    
    _imageA - First image to display
    
    _imageB - Second image to display
  - ViewJFrameImage
```
public ViewJFrameImage(ModelImage _imageA,
                       ModelLUT LUTa,
                       java.awt.Dimension loc,
                       boolean logMagDisplay)
```
    Makes a frame and puts an image component into it.
    
    Parameters:
    
    _imageA - First image to display
    
    LUTa - LUT of the imageA (if null grayscale LUT is constructed)
    
    loc - location where image should be initially placed
    
    logMagDisplay - Display log magnitude of image
  - ViewJFrameImage
```
public ViewJFrameImage(ModelSimpleImage simpleImage,
                       java.lang.String name)
```
    Constructs a ModelSimpleImage VJF
    
    Parameters:
    
    simpleImage -
    
    name -
- Method Detail
  - about
```
public void about()
```
    Makes an aboutDialog box and displays information of the image plane presently being displayed.
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    calls various methods depending on the action.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Specified by:
    
    actionPerformed in class ViewJFrameBase
    
    Parameters:
    
    event - event that triggered function
  - close
```
public void close()
```
    Closes window and disposes of frame and component.
    
    Overrides:
    
    close in class ViewJFrameBase
  - close
```
public void close(boolean closeAll)
```
    Closes window and disposes of frame and component.
    
    Overrides:
    
    close in class ViewJFrameBase
  - removeComponentListener
```
public void removeComponentListener()
```
  - removeMouseMotionListener
```
public void removeMouseMotionListener()
```
  - removeWindowListener
```
public void removeWindowListener()
```
  - removeMouseListener
```
public void removeMouseListener()
```
  - removeKeyListener
```
public void removeKeyListener()
```
  - collapseAlltoSinglePaint
```
public void collapseAlltoSinglePaint(boolean showProgressBar)
```
    This method is provided for the user to convert a masked area back to a painted area. It only affects those areas that were masked with the intensity value that is currently active.
    
    Parameters:
    
    showProgressBar - DOCUMENT ME!
  - componentResized
```
public void componentResized(java.awt.event.ComponentEvent event)
```
    Resizes frame and all components.
    
    Specified by:
    
    componentResized in interface java.awt.event.ComponentListener
    
    Overrides:
    
    componentResized in class ViewJFrameBase
    
    Parameters:
    
    event - event that triggered function
  - decSlice
```
public void decSlice()
```
    Decreases the slice to be displayed by one and updates title frame.
  - decSliceEyeTracker
```
public void decSliceEyeTracker()
```
  - doLinkedScrolling
```
public void doLinkedScrolling(int offset)
```
  - enableImageB
```
public void enableImageB(boolean enable)
```
    Quick and simple way for ViewJFrameBase to tell the ViewJFrameImage it created to set the menu (right now only for 2Dimensional) for image B.
    
    Parameters:
    
    enable - whether to enable the imageB related menu items
  - changeMenuEnables
```
public void changeMenuEnables()
```
    Routine to enable some menu items and disable othter menu items when the dimensionality or type of the image is changed.
  - finalize
```
public void finalize()
              throws java.lang.Throwable
```
    Cleans memory.
    
    Overrides:
    
    finalize in class ViewJFrameBase
    
    Throws:
    
    java.lang.Throwable - the Exception raised by this method
  - getActiveImage
```
public ModelImage getActiveImage()
```
    Returns the reference to the currently active image.
    
    Specified by:
    
    getActiveImage in interface VOIManagerInterfaceListener
    
    Returns:
    
    the active image
  - getAlphaBlend
```
public float getAlphaBlend()
```
    Returns the alphaBlend value for blending between imageA and imageB.
    
    Overrides:
    
    getAlphaBlend in class ViewJFrameBase
    
    Returns:
    
    the alphaBlend value for blending between imageA and imageB
  - getComponentImage
```
public ViewJComponentEditImage getComponentImage()
```
    Returns the reference to the component image.
    
    Returns:
    
    component image
  - getControls
```
public ViewControlsImage getControls()
```
    Get control widgets (toolbars, sliders) for the image frame.
    
    Specified by:
    
    getControls in class ViewJFrameBase
    
    Returns:
    
    the controls for this image frame
  - getFrameHeight
```
public int getFrameHeight()
```
    Return the height that the frame should have.
    
    Returns:
    
    the frame's height
  - getFrameSize
```
public java.awt.Dimension getFrameSize()
```
    Return the preferred size for the frame.
    
    Returns:
    
    the size the frame should be
  - getFrameSize
```
public java.awt.Dimension getFrameSize(java.awt.Dimension size)
```
    Return the preferred size for the frame.
    
    Parameters:
    
    size - if non-null, its dimensions are changed to the size the frame should be
    
    Returns:
    
    the size the frame should be
  - getFrameWidth
```
public int getFrameWidth()
```
    Return the width that the frame should have.
    
    Returns:
    
    the frame's width
  - getImageA
```
public ModelImage getImageA()
```
    Returns the reference to imageA.
    
    Specified by:
    
    getImageA in class ViewJFrameBase
    
    Returns:
    
    image
  - getImageB
```
public ModelImage getImageB()
```
    Returns the reference to imageB.
    
    Specified by:
    
    getImageB in class ViewJFrameBase
    
    Returns:
    
    imageB
  - getViewMenuBar
```
public ViewMenuBar getViewMenuBar()
```
    Returns:
    
    menuBarMaker
  - getJMenuBar
```
public javax.swing.JMenuBar getJMenuBar()
```
    Overrides:
    
    getJMenuBar in class javax.swing.JFrame
    
    Returns:
    
    menuBar
  - getRegisteredFramedImages
```
public java.util.Vector<ModelImage> getRegisteredFramedImages(ModelImage activeImage)
```
    Returns the Vector of Registered Framed Images that are of the same number of dimensions as the active image and same extents for dimesions 3, 4, and 5.
    
    Returns:
    
    Vector
  - getRegisteredFramedImages4D3D
```
public java.util.Vector<ModelImage> getRegisteredFramedImages4D3D(ModelImage activeImage)
```
    If active image is 4D, this returns all 3d images that have same x,y,and z dimensionality as the 4d image
    
    Returns:
    
    Vector
  - getRegisteredFramedImagesSize
```
public int getRegisteredFramedImagesSize()
```
    Returns the size of the RegisteredFramedImages Vector.
    
    Returns:
    
    size of the Vector
  - getRGBTA
```
public ModelRGB getRGBTA()
```
    Gets the RGB LUT table for ARGB image A.
    
    Overrides:
    
    getRGBTA in class ViewJFrameBase
    
    Returns:
    
    RGBT the new RGB LUT to be applied to the image
  - getRGBTB
```
public ModelRGB getRGBTB()
```
    Gets the RGB LUT table for ARGB image B.
    
    Overrides:
    
    getRGBTB in class ViewJFrameBase
    
    Returns:
    
    RGBT the new RGB LUT to be applied to the image
  - getScrollPane
```
public javax.swing.JScrollPane getScrollPane()
```
    DOCUMENT ME!
    
    Returns:
    
    JScrollPane
  - getScrollPaneSize
```
public java.awt.Dimension getScrollPaneSize(java.awt.Dimension size)
```
    Return the preferred size for the component image scroll pane.
    
    Parameters:
    
    size - if non-null, its dimensions are changed to the size the scroll pane should be
    
    Returns:
    
    the size the scroll pane should be
  - getViewableSlice
```
public int getViewableSlice()
```
    Get the top-most slice.
    
    Returns:
    
    returns the slice which is currently displayed
  - getViewableTimeSlice
```
public int getViewableTimeSlice()
```
    Gets the current Time slice which is being viewed.
    
    Returns:
    
    int the current time slice
  - handleMaskToPaint
```
public boolean handleMaskToPaint(boolean showProgressBar)
```
    This method is provided for the user to convert a masked area back to a painted area. It only affects those areas that were masked with the intensity value that is currently active.
    
    Parameters:
    
    showProgressBar - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - incSlice
```
public void incSlice()
```
    Increases the slice to be displayed by one and updates title frame.
  - incSliceEyeTracker
```
public void incSliceEyeTracker()
```
  - initExtentsVariables
```
public void initExtentsVariables(ModelImage img)
```
    Initializes the variables based on the image extents. (i.e. number of slices, number of time slices, the initial z-slice, etc.
    
    Parameters:
    
    img - the image to set the extent variables for
  - keyPressed
```
public void keyPressed(java.awt.event.KeyEvent e)
```
    ********************************************************************* **************************** Key Events *** **************************.*********************************************************************
    
    Specified by:
    
    keyPressed in interface java.awt.event.KeyListener
    
    Parameters:
    
    e - DOCUMENT ME!
  - keyReleased
```
public void keyReleased(java.awt.event.KeyEvent e)
```
    DOCUMENT ME!
    
    Specified by:
    
    keyReleased in interface java.awt.event.KeyListener
    
    Parameters:
    
    e - DOCUMENT ME!
  - keyTyped
```
public void keyTyped(java.awt.event.KeyEvent e)
```
    DOCUMENT ME!
    
    Specified by:
    
    keyTyped in interface java.awt.event.KeyListener
    
    Parameters:
    
    e - DOCUMENT ME!
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent event)
```
    DOCUMENT ME!
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - DOCUMENT ME!
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent e)
```
    DOCUMENT ME!
    
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Parameters:
    
    e - DOCUMENT ME!
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent event)
```
    DOCUMENT ME!
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - DOCUMENT ME!
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent event)
```
    DOCUMENT ME!
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - DOCUMENT ME!
  - mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent e)
```
    DOCUMENT ME!
    
    Specified by:
    
    mouseMoved in interface java.awt.event.MouseMotionListener
    
    Parameters:
    
    e - DOCUMENT ME!
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent event)
```
    DOCUMENT ME!
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - DOCUMENT ME!
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent event)
```
    DOCUMENT ME!
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - DOCUMENT ME!
  - openFrame
```
public ViewJFrameImage openFrame(ModelImage image)
```
    ViewOpenFrameInterface function to create a new frame from a result image (jdialog produced)
    
    Specified by:
    
    openFrame in interface ViewOpenFrameInterface
  - printImage
```
public void printImage()
```
    Method to send an image to the printer.
  - removeControls
```
public void removeControls()
```
    Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls. Since the controls point to this particular image, when we remove the controls, turn off the highlight box.
    
    Specified by:
    
    removeControls in class ViewJFrameBase
    
    See Also:
    
    ViewJComponentEditImage.useHighlight(boolean), Component.repaint()
  - saveImageInfo
```
public void saveImageInfo()
```
    Saves the image info; need to do before saving image.
  - setActiveImage
```
public void setActiveImage(int active)
```
    Sets the active image for drawing VOIs. VOIs are only drawn in the active image. In addition, algorithms are executed on the active window.
    
    Specified by:
    
    setActiveImage in interface VOIManagerInterfaceListener
    
    Specified by:
    
    setActiveImage in class ViewJFrameBase
    
    Parameters:
    
    active - IMAGE_A or IMAGE_B
  - setAlphaBlend
```
public void setAlphaBlend(int value)
```
    Sets the alpha blending of parameter for two image displaying.
    
    Specified by:
    
    setAlphaBlend in class ViewJFrameBase
    
    Parameters:
    
    value - amount [0,100] that is the percentage of Image A to be displayed
  - setAndLoad
```
public boolean setAndLoad(ModelImage image2load)
```
    DOCUMENT ME!
    
    Parameters:
    
    image2load - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - setAndLoad
```
public boolean setAndLoad(ModelImage image2load,
                          boolean doOrigins,
                          boolean doOrients,
                          double defaultValue,
                          double defaultRed,
                          double defaultGreen,
                          double defaultBlue)
```
    DOCUMENT ME!
    
    Parameters:
    
    image2load - DOCUMENT ME!
    
    doOrigins - DOCUMENT ME!
    
    doOrients - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - setControls
```
public void setControls()
```
    Sets the menu and controls (i.e. toolbars) of the main frame! This puts the menus and controls needed to controls the operations of this frame. Different image frames have different menu and controls. Notify this componentImage that it needs to display highlight box, notifying user that this componentImage is the image being controlled
    
    Specified by:
    
    setControls in class ViewJFrameBase
    
    See Also:
    
    ViewJComponentEditImage.useHighlight(boolean), Component.repaint()
  - setEnabled
```
public void setEnabled(boolean flag)
```
    Controls whether or not the images/VOIs of the frame can be modified.
    
    Specified by:
    
    setEnabled in class ViewJFrameBase
    
    Parameters:
    
    flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified
  - setImageB
```
public void setImageB(ModelImage _imageB)
```
    Sets the reference to imageB.
    
    Specified by:
    
    setImageB in class ViewJFrameBase
    
    Parameters:
    
    _imageB - image to set the frame to
  - setLUTa
```
public void setLUTa(ModelLUT LUT)
```
    Sets the LUT for image A.
    
    Overrides:
    
    setLUTa in class ViewJFrameBase
    
    Parameters:
    
    LUT - the LUT
  - setLUTb
```
public void setLUTb(ModelLUT LUT)
```
    Sets the LUT for image B.
    
    Overrides:
    
    setLUTb in class ViewJFrameBase
    
    Parameters:
    
    LUT - the LUT
  - setOutputWindowBox
```
public void setOutputWindowBox(boolean isShown)
```
    Updates the checkbox to show whether or not the output window is currently displayed.
    
    Parameters:
    
    isShown - boolean is the output window shown
  - setPaintBitmapSwitch
```
public void setPaintBitmapSwitch(boolean paintBitmapSwitch)
```
    When switching the active image, copy the paintBitmap of the previous active image into the paintBitmap of the new active image.
    
    Specified by:
    
    setPaintBitmapSwitch in class ViewJFrameBase
    
    Parameters:
    
    paintBitmapSwitch - if true do not getMask on a setActiveImage command
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
    Sets the RGB LUT table for ARGB image A.
    
    Specified by:
    
    setRGBTA in class ViewJFrameBase
    
    Parameters:
    
    RGBT - the new RGB LUT to be applied to the image
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
    Sets the RGB LUT table for ARGB image B.
    
    Specified by:
    
    setRGBTB in class ViewJFrameBase
    
    Parameters:
    
    RGBT - the new RGB LUT to be applied to the image
  - setShiftDown
```
public void setShiftDown(boolean isShiftDown)
```
    DOCUMENT ME.*
    
    Parameters:
    
    isShiftDown - DOCUMENT ME!
  - setSlice
```
public void setSlice(int slice)
```
    Sets the slice to be displayed and updates title frame.
    
    Specified by:
    
    setSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - indicates image slice to be displayed
  - setSlice
```
public void setSlice(int slice,
                     boolean updateLinkedImages)
```
    DOCUMENT ME!
    
    Parameters:
    
    slice - DOCUMENT ME!
    
    updateLinkedImages - DOCUMENT ME!
  - setTimeSlice
```
public void setTimeSlice(int slice)
```
    Sets the slice to be displayed and updates title frame.
    
    Specified by:
    
    setTimeSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - indicates image time-slice (4th dimension) to be displayed
  - setTimeSlice
```
public void setTimeSlice(int slice,
                         boolean checkScroll)
```
    Sets the slice to be displayed and updates title frame.
    
    Parameters:
    
    slice - indicates image time-slice (4th dimension) to be displayed
    
    whether - linked images should change their linked image sets
  - setTitle
```
public void setTitle()
```
    Sets the title of the frame with the image name and the slice location.
    
    Specified by:
    
    setTitle in class ViewJFrameBase
  - setZoomB
```
public boolean setZoomB()
```
    Sets the magnification of Image B. Allocates the image buffers so that it can be displayed properly.
    
    Returns:
    
    true if setting the zoom on imageB was successful
  - setZoomDialogNull
```
public void setZoomDialogNull()
```
    Sets the magnification dialog to null.
  - showEditImageInfo
```
public void showEditImageInfo()
```
    DOCUMENT ME!
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent event)
```
    DOCUMENT ME!
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Overrides:
    
    stateChanged in class ViewJFrameBase
    
    Parameters:
    
    event - DOCUMENT ME!
  - triPlanarClosing
```
public void triPlanarClosing()
```
    DOCUMENT ME!
  - updateFrame
```
public void updateFrame(float sX,
                        float sY)
```
    Updates the this frame's size the components sizes. If the magnified image fits into the frame that will fit into the screen then frame and image are sized appropriately. If the frame, to fit the image, exceeds the screen size the frame remains the same size and the image magnified and placed in the scroll pane.
    
    Parameters:
    
    sX - zoom in the x dimension
    
    sY - zoom in the y dimension
  - updateFrame
```
public void updateFrame(float sX,
                        float sY,
                        int x,
                        int y)
```
    public void updateFrame(float xZoom, float yZoom, int x, int y) This method is called when the user is zooming in or out.
    
    Parameters:
    
    sX - float zoom in the x dimension
    
    sY - float zoom in the y dimension
    
    x - int X-pixel the user wants to zoom around
    
    y - int Y-pixel the user wants to zoom around
  - updateImageExtents
```
public boolean updateImageExtents()
```
    This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.
    
    Specified by:
    
    updateImageExtents in interface ViewImageUpdateInterface
    
    Specified by:
    
    updateImageExtents in class ViewJFrameBase
    
    Returns:
    
    whether the image extents update was successful
    
    See Also:
    
    ViewImageUpdateInterface
  - updateImages
```
public boolean updateImages()
```
    This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(boolean forceShow)
```
    This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    forceShow - forces show to re import image and calc. java image
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(boolean forceShow,
                            int interpMode)
```
    This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
    
    Parameters:
    
    forceShow - forces show to re import image and calc. java image
    
    interpMode -
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(ModelLUT LUTa,
                            ModelLUT LUTb,
                            boolean forceShow,
                            int interpMode)
```
    This methods calls the componentImage's update method to redraw the screen.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    LUTa - LUT used to update imageA
    
    LUTb - LUT used to update imageB
    
    forceShow - forces show to re import image and calc. java image
    
    interpMode - image interpolation method (Nearest or Smooth)
    
    Returns:
    
    boolean confirming successful update
  - updateMenubar
```
public void updateMenubar()
```
    This method updates the menubar; ie: after an image has been opened.
  - updateWinLevel
```
public void updateWinLevel(int min,
                           int max)
```
    Update the window level sliders from the CT preset dialog.
    
    Parameters:
    
    min - min value.
    
    max - max value.
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Closes window and disposes of frame and component.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class ViewJFrameBase
    
    Parameters:
    
    event - Event that triggered function
  - createBuffers
```
protected int[] createBuffers()
                       throws java.lang.OutOfMemoryError
```
    Create the buffers for imageA and imageB.
    
    Returns:
    
    the extents of the buffers
    
    Throws:
    
    java.lang.OutOfMemoryError - if enough memory cannot be allocated for this method
  - getActiveImageInfoDialog
```
protected JDialogImageInfo getActiveImageInfoDialog()
```
    Returns a reference to the image info dialog for the active image. Image A and image B have references to their individual dialogs.
    
    Returns:
    
    a reference to the image info dialog for the active image
  - getImageInfoDialogB
```
protected JDialogImageInfo getImageInfoDialogB()
```
    Returns the image info dialog for image B.
    
    Returns:
    
    the image info dialog for image B
  - getScrollPaneHeight
```
protected int getScrollPaneHeight()
```
    Get the height of the scroll pane holding the component image.
    
    Returns:
    
    the height of the component image scroll pane
  - getScrollPaneSize
```
protected java.awt.Dimension getScrollPaneSize()
```
    Get the size of the scroll pane holding the component image.
    
    Returns:
    
    the size of the component image scroll pane
  - getScrollPaneWidth
```
protected int getScrollPaneWidth()
```
    Get the width of the scroll pane holding the component image.
    
    Returns:
    
    the width of the component image scroll pane
  - initLUT
```
protected void initLUT()
                throws java.lang.OutOfMemoryError
```
    Creates and initializes the LUT for the first image (imageA) if it hasn't been already.
    
    Throws:
    
    java.lang.OutOfMemoryError - if enough memory cannot be allocated for this method
  - initResolutions
```
public void initResolutions()
```
    Initializes the resolutions and units from the image.
  - initZoom
```
public void initZoom()
```
    Initializes the zoom variables for the first image (imageA).
  - makeTitle
```
protected java.lang.String makeTitle()
```
    Constructs the title of the frame with the image name and the slice location.
    
    Returns:
    
    the image frame title
  - testParameter
```
protected boolean testParameter(java.lang.String str,
                                double minValue,
                                double maxValue)
```
    Tests that the entered parameter is in range.
    
    Parameters:
    
    str - the value entered by the user
    
    minValue - the minimum value this variable may be set to
    
    maxValue - the maximum value this variable may be set to
    
    Returns:
    
    boolean result of test
  - updateHistoLUTFrame
```
@Deprecated
protected void updateHistoLUTFrame(int imageAorB)
```
    Deprecated.
    
    Displays histoLUT frame for a gray scale image.
    
    Parameters:
    
    imageAorB - whether to show the IMAGE_A, IMAGE_B or IMAGE_A_B lut frame
  - updateHistoLUTFrame
```
@Deprecated
protected void updateHistoLUTFrame(int imageAorB,
                                   ViewJComponentEditImage compImg)
```
    Deprecated.
    
    Displays histoLUT frame for a gray scale image.
    
    Parameters:
    
    imageAorB - whether to show the IMAGE_A, IMAGE_B or IMAGE_A_B lut frame
    
    compImg - the component image with the image histogram frames to update
  - updateHistoRGBFrame
```
@Deprecated
protected void updateHistoRGBFrame(int imageAorB)
```
    Deprecated.
    
    Displays histoRGB frame for an RGB image.
    
    Parameters:
    
    imageAorB - indicates whether to show IMAGE_A, IMAGE_B or IMAGE_A_B (both).
  - updateHistoRGBFrame
```
@Deprecated
protected void updateHistoRGBFrame(int imageAorB,
                                   ViewJComponentEditImage compImg)
```
    Deprecated.
    
    Displays histoRGB frame for an RGB image.
    
    Parameters:
    
    imageAorB - indicates whether to show IMAGE_A, IMAGE_B or IMAGE_A_B (both).
    
    compImg - the component image with the image histogram frames to update
  - adjustScrollbars
```
private void adjustScrollbars(int x,
                              int y)
```
    DOCUMENT ME!
    
    Parameters:
    
    x - int
    
    y - int
  - computeIdealWindowSize
```
protected void computeIdealWindowSize()
```
    private void computeIdealWindowSize() This method will enlarge or shrink the window size in response to the componentImage being zoomed. It will only resize the window to IMAGE_SCREEN_RATIO of the screen size, in this case 3/5. If the image is zoomed past that size, scrollbars are added. If the user has dragged the window to a size larger than 3/5 of screen size, I assume he wants it that way and the window will not be resized in that case upon zoom-in.
  - init
```
private void init(ModelLUT LUTa,
                  java.awt.Dimension loc,
                  boolean logMagDisplay)
           throws java.lang.OutOfMemoryError
```
    Initializes the frame and variables.
    
    Parameters:
    
    LUTa - LUT of the imageA (if null grayscale LUT is constructed)
    
    loc - location where image should be initially placed
    
    logMagDisplay - a boolean indicating if the log magnitude of image should be displayed.
    
    Throws:
    
    java.lang.OutOfMemoryError - if enough memory cannot be allocated for the GUI
  - initComponentImage
```
protected void initComponentImage(int[] extents)
                           throws java.lang.OutOfMemoryError
```
    Creates and initializes the component image for the given image.
    
    Parameters:
    
    extents - the image dimensionality.
    
    Throws:
    
    java.lang.OutOfMemoryError - if enough memory cannot be allocated for this method
  - isMultipleImages
```
private boolean isMultipleImages()
```
    Helper method to establish if there are other images so that a dialog can be created. Used by registration methods, load frame, etc.
    
    Returns:
    
    true if there are images to operate on.
  - isMultipleSameSizeImages
```
private boolean isMultipleSameSizeImages(boolean isForCalculator)
```
    Helper method to establish if there are images of the same dimensionality so that a dialog can be created. Used by image calculator, concat, etc.
    
    Parameters:
    
    isForCalculator - whether this call is being done before using the image calculator
    
    Returns:
    
    true if there are images to operate on.
  - propagatePaintToAllSlices
```
private void propagatePaintToAllSlices()
```
    DOCUMENT ME!
  - propagatePaintToNextSlice
```
private void propagatePaintToNextSlice()
```
    DOCUMENT ME!
  - propagatePaintToPreviousSlice
```
private void propagatePaintToPreviousSlice()
```
    DOCUMENT ME!
  - checkForActiveVOIs
```
private boolean checkForActiveVOIs()
```
  - convertVOITBI
```
private void convertVOITBI()
```
  - surfaceReconstructionTBI
```
private void surfaceReconstructionTBI()
```
  - saveMergedVOIs
```
private void saveMergedVOIs()
```
    This method merges the 3 axial, sagittal, coronal VOIs and save them into one cloudy points file. This function is used by the prostate surface reconstruction analysis.
  - reconstructSurfaceFromVOIs
```
private void reconstructSurfaceFromVOIs()
```
    Reconstruct the prostate surface from the coarse VOIs cloudy points.
  - saveProstateFeatures
```
private void saveProstateFeatures()
```
  - saveProstateFeatures2D
```
private void saveProstateFeatures2D()
```
  - saveProstateBoundaryFeature
```
private void saveProstateBoundaryFeature()
```
  - testProstateFeatures2D
```
private void testProstateFeatures2D()
```
  - testProstateFeatures
```
public void testProstateFeatures()
```
  - testProstateFeaturesClassification
```
private void testProstateFeaturesClassification()
```
  - testProstateFeaturesTrain
```
private void testProstateFeaturesTrain()
```
  - testProstateBoundaryFeatureTrain
```
private void testProstateBoundaryFeatureTrain()
```
  - generateAtlasImage
```
private void generateAtlasImage()
```
    Read the 3D atlas images directory, convert each 3D image to 2D slices based atlas. And save the final 2D slice and corresponding VOIs to specified atlas directory.
  - generateEndingSlices
```
private void generateEndingSlices()
```
  - aamGroups
```
private void aamGroups()
```
  - aamGroupRename
```
private void aamGroupRename()
```
  - aamClassification
```
private void aamClassification()
```
  - deepCNNTrain
```
private void deepCNNTrain()
```
  - deepCNNTest
```
private void deepCNNTest()
```
  - deepCNNConvert
```
private void deepCNNConvert()
```
  - deepKneesAtlas
```
private void deepKneesAtlas()
```
  - deepKneesMap
```
private void deepKneesMap()
```
  - deepCNNMap
```
private void deepCNNMap()
```
  - hedCNNMap
```
private void hedCNNMap()
```
  - aamMLClassification
```
private void aamMLClassification()
```
  - extractCEFeature
```
private void extractCEFeature()
```
  - loadProstateMask
```
private void loadProstateMask()
```
  - prostateSemiAutoBSplineFuzzyC
```
private void prostateSemiAutoBSplineFuzzyC()
```
  - prostateSemiAutoBSpline
```
private void prostateSemiAutoBSpline()
```
  - initVOI
```
protected void initVOI()
```
    Initialize the 3D VOI interface.
  - getCenterPt
```
public WildMagic.LibFoundation.Mathematics.Vector3f getCenterPt()
```
    Specified by:
    
    getCenterPt in interface VOIManagerInterfaceListener
  - getFrame
```
public javax.swing.JFrame getFrame()
```
    Specified by:
    
    getFrame in interface VOIManagerInterfaceListener
  - getVOIManager
```
public VOIManagerInterface getVOIManager()
```
    Specified by:
    
    getVOIManager in interface VOIManagerInterfaceListener
  - PointerActive
```
public void PointerActive(boolean bActive)
```
    Specified by:
    
    PointerActive in interface VOIManagerInterfaceListener
  - PropDown
```
public WildMagic.LibFoundation.Mathematics.Vector3f PropDown(int iActive)
```
    Specified by:
    
    PropDown in interface VOIManagerInterfaceListener
  - PropUp
```
public WildMagic.LibFoundation.Mathematics.Vector3f PropUp(int iActive)
```
    Specified by:
    
    PropUp in interface VOIManagerInterfaceListener
  - create3DVOI
```
public void create3DVOI(boolean bIntersection)
```
    Specified by:
    
    create3DVOI in interface VOIManagerInterfaceListener
  - setActiveImage
```
public void setActiveImage(ModelImage kImage)
```
    Specified by:
    
    setActiveImage in interface VOIManagerInterfaceListener
  - setCenter
```
public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
```
    Specified by:
    
    setCenter in interface VOIManagerInterfaceListener
  - setCursor
```
public void setCursor(java.awt.Cursor kCursor)
```
    Specified by:
    
    setCursor in interface VOIManagerInterfaceListener
    
    Overrides:
    
    setCursor in class java.awt.Window
  - setModified
```
public void setModified()
```
    Specified by:
    
    setModified in interface VOIManagerInterfaceListener
  - updateData
```
public void updateData()
```
    Specified by:
    
    updateData in interface VOIManagerInterfaceListener
  - getActiveLUT
```
public ModelLUT getActiveLUT()
```
    Specified by:
    
    getActiveLUT in interface VOIManagerInterfaceListener
  - getActiveRGB
```
public ModelRGB getActiveRGB()
```
    Specified by:
    
    getActiveRGB in interface VOIManagerInterfaceListener
  - setPaintMask
```
public void setPaintMask(java.util.BitSet mask)
```
    Specified by:
    
    setPaintMask in interface VOIManagerInterfaceListener
  - paintToShortMask
```
public void paintToShortMask()
```
    Specified by:
    
    paintToShortMask in interface VOIManagerInterfaceListener
  - paintToUbyteMask
```
public void paintToUbyteMask()
```
    Specified by:
    
    paintToUbyteMask in interface VOIManagerInterfaceListener
  - maskToPaint
```
public void maskToPaint()
```
    Specified by:
    
    maskToPaint in interface VOIManagerInterfaceListener
  - getFrameLandMarkPoints
```
public int[] getFrameLandMarkPoints()
```
    Get the frame four corner landmark points.
    
    Returns:
    
    landmark points result[0] = startX; result[1] = startY; result[2] = endX; result[3] = endY;
  - addSphereVOIs
```
public void addSphereVOIs(VOI annotations)
```
    Specified by:
    
    addSphereVOIs in interface VOIManagerInterfaceListener

Class ViewJFrameImage

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

serialVersionUID

xScreen

yScreen

componentImage

controls

heightResFactor

imageBufferA

imageBufferB

infoDialogA

infoDialogB

logMagDisplay

menuBar

menuBarMaker

menuBuilder

nImage

nTImage

pixBuffer

pixBufferB

resols

scrollPane

units

widthResFactor

windowLevel

zoom

colorChooser

doOrients

doOrigins

gridOptions

isShiftDown

paintBrushLocked

quickPaintBrushIndex

zoomDialog

dpDialog

multipaintDialog

VOIGroup

voiMenu

voiManager

prostateAAMClassification

prostateML

Constructor Detail

ViewJFrameImage

ViewJFrameImage

ViewJFrameImage

ViewJFrameImage

ViewJFrameImage

ViewJFrameImage

Method Detail

about

actionPerformed

close

close

removeComponentListener

removeMouseMotionListener

removeWindowListener

removeMouseListener