Package gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork

Class JPanelDTIEstimateTensor

java.lang.Object
java.awt.Component
java.awt.Container
javax.swing.JComponent
javax.swing.JPanel
gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
All Implemented Interfaces:
AlgorithmInterface, ActionListener, ItemListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible
public class JPanelDTIEstimateTensor extends JPanel implements AlgorithmInterface, ActionListener, ItemListener
See Also:

  • Field Details

    • serialVersionUID

      private static final long serialVersionUID
      See Also:

    • DEFAULT

      public static final int DEFAULT
      Different DTI algorithms:
      See Also:

    • LLMSE

      public static final int LLMSE
      See Also:

    • LINEAR

      public static final int LINEAR
      See Also:

    • NON_LINEAR

      public static final int NON_LINEAR
      See Also:

    • RESTORE

      public static final int RESTORE
      See Also:

    • WEIGHTED_LINEAR

      public static final int WEIGHTED_LINEAR
      See Also:

    • comboBoxDTI_Algorithm

      private JComboBox comboBoxDTI_Algorithm
      menu for selecting dti algorithm:

    • mainPanel

      private JPanel mainPanel
      main panel

    • maskImage

      private ModelImage maskImage
      Mask image for the tensor calculation

    • outputDirTextField

      private JTextField outputDirTextField
      output directory

    • pipeline

      private DTIPipeline pipeline
      parent dialog

    • tensorImage

      private ModelImage tensorImage
      Diffusion tensor image:

    • textMaskimage

      private JTextField textMaskimage
      mask image location:

    • textListFile

      private JTextField textListFile
      DWI .list location:

    • EPIpanel

      private JPanelEPIDistortionCorrection EPIpanel

    • displayExit

      private JCheckBox displayExit
      Check boxes enable the user to save and display output images:

    • displayIntensity

      private JCheckBox displayIntensity

    • displayTensor

      private JCheckBox displayTensor

    • saveExit

      private JCheckBox saveExit

    • saveIntensity

      private JCheckBox saveIntensity

    • saveTensor

      private JCheckBox saveTensor

    • serif12

      private Font serif12

    • calcTensor

      private JButton calcTensor

    • m_iDimX

      private int m_iDimX

    • m_iDimY

      private int m_iDimY

    • m_iSlices

      private int m_iSlices

    • m_iWeights

      private int m_iWeights

    • m_kRawFormat

      private String m_kRawFormat

    • m_fResX

      private float m_fResX

    • m_fResY

      private float m_fResY

    • m_fResZ

      private float m_fResZ

    • m_fMeanNoise

      private float m_fMeanNoise

    • m_bUseXRes

      private boolean m_bUseXRes

    • m_bUseYRes

      private boolean m_bUseYRes

    • m_bUseZRes

      private boolean m_bUseZRes

    • m_kDWIImage

      ModelImage m_kDWIImage

    • m_aakDWIList

      private String[][] m_aakDWIList

    • m_kBMatrix

      private WildMagic.LibFoundation.Mathematics.GMatrixd m_kBMatrix

    • m_aiMatrixEntries

      private int[] m_aiMatrixEntries

    • m_iBOrig

      private int m_iBOrig

  • Constructor Details

    • JPanelDTIEstimateTensor

      public JPanelDTIEstimateTensor(DTIPipeline pipeline)

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Specified by:
      actionPerformed in interface ActionListener

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      Description copied from interface: AlgorithmInterface
      Called after an algorithm this listener is registered to exits (maybe successfully, maybe not). If the algorithm is run in a separate thread, this call will be made within that thread. If not, this call will be made from that same, shared thread.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - the algorithm which has just completed

    • calcTensor

      public void calcTensor(ModelImage dwiImage)

    • getMaskImage

      public ModelImage getMaskImage()

    • itemStateChanged

      public void itemStateChanged(ItemEvent event)
      Specified by:
      itemStateChanged in interface ItemListener

    • setImage

      public void setImage(ModelImage image)
      Set the input diffusion-weighted image (4D image series).
      Parameters:
      image -

    • buildTensorEstPanel

      private void buildTensorEstPanel()

    • buildMaskLoadPanel

      private void buildMaskLoadPanel()

    • finishTensorPanel

      private void finishTensorPanel()

    • init

      private void init()

    • loadMaskImage

      private void loadMaskImage()

    • loadDWIListFile

      public void loadDWIListFile()
      Launches the JFileChooser for the user to select the Diffusion Weighted Images .path file. Loads the .path file.

    • enableCalcButton

      public void enableCalcButton()

    • loadPathFile

      public void loadPathFile(String kFileName, String kPathName)
      Loads the .path file.
      Parameters:
      kFileName - path file name.
      kPathName - , parent directory.

    • loadBMatrixFile

      private void loadBMatrixFile(String kFileName)
      Loads the BMatrix file.
      Parameters:
      kFileName - , name of BMatrix file.