gov.nih.mipav.model.algorithms.Quaternions

All Implemented Interfaces:: ActionListener, WindowListener, Runnable, EventListener

public class Quaternions extends AlgorithmBase

Copyright (c) 2000-2009, Jay St. Pierre All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread
Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler
Field Summary

Fields

Modifier and Type

Field

Description

private double

epsilon

private double

neweps

private ViewUserInterface

UI

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY
Constructor Summary

Constructors

Constructor

Description

Quaternions()
Method Summary

Modifier and Type

Method

Description

double[][]

dcm2q(double[][][] R)

int

isnormq(double[][] q)

int

isq(double[][] q)

double[][][]

q2dcm(double[][] qorg)

double[][]

qconj(double[][] qinorg, boolean warning)

double[][]

qcvq(double[][] qorg, double[][] vorg)

void

qdecomp(double[][] v, double[] phi, double[][] qorg)

double[][]

qmult(double[][] q1org, double[][] q2org)

double[][]

qnorm(double[][] qinorg)

double[][]

qvqc(double[][] qorg, double[][] v)

double[][]

qvrot(double[][] q, double[][] v)

double[][]

qvxform(double[][] q, double[][] v)

void

runAlgorithm()

Actually runs the algorithm.

void

test_dcm2q()

void

test_isnormq()

void

test_isq()

void

test_q2dcm()

void

test_qconj()

void

test_qcvq()

void

test_qdecomp()

void

test_qmult()

void

test_qnorm()

void

test_qvqc()

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details
- UI
  
  private ViewUserInterface UI
- epsilon
  
  private double epsilon
- neweps
  
  private double neweps
Constructor Details
- Quaternions
  
  public Quaternions()
Method Details
- runAlgorithm
  
  public void runAlgorithm()
  
  Description copied from class: AlgorithmBase
  
  Actually runs the algorithm. Implemented by inheriting algorithms.
  
  Specified by:
  
  runAlgorithm in class AlgorithmBase
- test_isq
  
  public void test_isq()
- test_isnormq
  
  public void test_isnormq()
- test_qnorm
  
  public void test_qnorm()
- test_qmult
  
  public void test_qmult()
- test_qconj
  
  public void test_qconj()
- test_qcvq
  
  public void test_qcvq()
- test_qvqc
  
  public void test_qvqc()
- test_qdecomp
  
  public void test_qdecomp()
- test_dcm2q
  
  public void test_dcm2q()
- test_q2dcm
  
  public void test_q2dcm()
- isq
  
  public int isq(double[][] q)
- isnormq
  
  public int isnormq(double[][] q)
- qnorm
  
  public double[][] qnorm(double[][] qinorg)
- qmult
  
  public double[][] qmult(double[][] q1org, double[][] q2org)
- qconj
  
  public double[][] qconj(double[][] qinorg, boolean warning)
- qcvq
  
  public double[][] qcvq(double[][] qorg, double[][] vorg)
- qvqc
  
  public double[][] qvqc(double[][] qorg, double[][] v)
- qvxform
  
  public double[][] qvxform(double[][] q, double[][] v)
- qvrot
  
  public double[][] qvrot(double[][] q, double[][] v)
- qdecomp
  
  public void qdecomp(double[][] v, double[] phi, double[][] qorg)
- dcm2q
  
  public double[][] dcm2q(double[][][] R)
- q2dcm
  
  public double[][][] q2dcm(double[][] qorg)

Class Quaternions

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Details

UI

epsilon

neweps

Constructor Details

Quaternions

Method Details

runAlgorithm

test_isq

test_isnormq

test_qnorm

test_qmult

test_qconj

test_qcvq

test_qvqc

test_qdecomp

test_dcm2q

test_q2dcm

isq

isnormq

qnorm

qmult

qconj

qcvq

qvqc

qvxform

qvrot

qdecomp

dcm2q

q2dcm