java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
    - - gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class OpenCLAlgorithmMarchingCubes
extends OpenCLAlgorithmBase
```

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean`	`blurFlag`	If true then the input image is blurred slightly.
`private float`	`blurSigma`	The amount to blur to smooth surface.
`private boolean`	`decimateFlag`	If true then the extracted surface is decimated into a continuous level of detail surface (clod).
`private int[]`	`edgeTable`
`private float`	`isoValue`
`(package private) int[]`	`numVertsTable`
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`resultMesh`
`private java.lang.String`	`surfaceFileName`	Path and name of extracted surface file. ".sur" will be appended if necessary.
`private int[]`	`triTable`
`private static int`	`X`

Fields inherited from class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
cl, color, colorMask, contextLibrary, depth, device, entireImage, height, m_iDeviceType, m_kGL, openCLTypeLibrary, time, width

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`OpenCLAlgorithmMarchingCubes(ModelImage image, int level, boolean entireImage, boolean decFlag, boolean blurFlag, float sigma, java.lang.String fileName)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for destruction.
`WildMagic.LibGraphics.SceneGraph.TriMesh`	`getMesh()`
`private void`	`marchingCubes3D(int time)`
`private float`	`reductionKernel(org.jocl.cl_command_queue commandQueue, long elementCount, org.jocl.cl_mem inputBuffer)`
`void`	`runAlgorithm()`	Starts the program.
`private void`	`saveMesh(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> newVertices, int[] aiConnect, boolean flip, java.lang.String kName)`

Methods inherited from class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase
checkError, getInt, getInts, getLong, getLongs, getMaxMemoryUsed, getString, getString, initCL, isOCLAvailable, readKernelFile, roundUp, saveImage, saveImage, setBlue, setGreen, setRed, setTime

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail
- isoValue
```
private float isoValue
```
- blurFlag
```
private final boolean blurFlag
```
  If true then the input image is blurred slightly.
- blurSigma
```
private float blurSigma
```
  The amount to blur to smooth surface.
- decimateFlag
```
private final boolean decimateFlag
```
  If true then the extracted surface is decimated into a continuous level of detail surface (clod).
- surfaceFileName
```
private java.lang.String surfaceFileName
```
  Path and name of extracted surface file. ".sur" will be appended if necessary.
- edgeTable
```
private int[] edgeTable
```
- X
```
private static final int X
```
  See Also:
  
  Constant Field Values
- triTable
```
private int[] triTable
```
- numVertsTable
```
int[] numVertsTable
```
- resultMesh
```
private WildMagic.LibGraphics.SceneGraph.TriMesh resultMesh
```

Constructor Detail

OpenCLAlgorithmMarchingCubes

public OpenCLAlgorithmMarchingCubes(ModelImage image,
                                    int level,
                                    boolean entireImage,
                                    boolean decFlag,
                                    boolean blurFlag,
                                    float sigma,
                                    java.lang.String fileName)

Method Detail

finalize
```
public void finalize()
```
Prepares this class for destruction.

Overrides:

finalize in class OpenCLAlgorithmBase

runAlgorithm
```
public void runAlgorithm()
```
Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

marchingCubes3D

private void marchingCubes3D(int time)

reductionKernel

private float reductionKernel(org.jocl.cl_command_queue commandQueue,
                              long elementCount,
                              org.jocl.cl_mem inputBuffer)

getMesh

public WildMagic.LibGraphics.SceneGraph.TriMesh getMesh()

saveMesh

private void saveMesh(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> newVertices,
                      int[] aiConnect,
                      boolean flip,
                      java.lang.String kName)
               throws java.io.IOException

Throws:: java.io.IOException

Class OpenCLAlgorithmMarchingCubes

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.OpenCLAlgorithmBase

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

isoValue

blurFlag

blurSigma

decimateFlag

surfaceFileName

edgeTable

X

triTable

numVertsTable

resultMesh

Constructor Detail

OpenCLAlgorithmMarchingCubes

Method Detail

finalize

runAlgorithm

marchingCubes3D

reductionKernel

getMesh

saveMesh