Package gov.nih.mipav.view.dialogs

Class JDialogTalairach

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogTalairach

All Implemented Interfaces:

DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class JDialogTalairach
extends JDialogBase

Dialog to enter points for creating an Talaraich image.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private static int	A	DOCUMENT ME!
private javax.swing.JRadioButton	anteriorPt	DOCUMENT ME!
private WildMagic.LibFoundation.Mathematics.Vector3f	anteriorPt3Df	DOCUMENT ME!
private javax.swing.JButton	applyTalairachButton	DOCUMENT ME!
private static float	ATLAS_AC_TO_LAT	DOCUMENT ME!
private static float	ATLAS_AC_TO_TOP	DOCUMENT ME!
private static float	ATLAS_BOT_TO_AC	DOCUMENT ME!
private static float	ATLAS_FRONT_TO_AC	DOCUMENT ME!
private static float	ATLAS_PC_TO_BACK	DOCUMENT ME!
private javax.swing.JButton	cancelTalairachButton	DOCUMENT ME!
private javax.swing.JButton	clearTalairachButton	DOCUMENT ME!
private ViewJFrameTriImage	frame	DOCUMENT ME!
private boolean	haveAnteriorPt	DOCUMENT ME!
private boolean	haveInferiorPt	DOCUMENT ME!
private boolean	haveLeftPt	DOCUMENT ME!
private boolean	havePosteriorPt	DOCUMENT ME!
private boolean	haveRightPt	DOCUMENT ME!
private boolean	haveSuperiorPt	DOCUMENT ME!
private static int	I	DOCUMENT ME!
private ModelImage	image	DOCUMENT ME!
private javax.swing.JRadioButton	inferiorPt	DOCUMENT ME!
private WildMagic.LibFoundation.Mathematics.Vector3f	inferiorPt3Df	DOCUMENT ME!
private static int	L	DOCUMENT ME!
private javax.swing.JRadioButton	leftPt	DOCUMENT ME!
private WildMagic.LibFoundation.Mathematics.Vector3f	leftPt3Df	DOCUMENT ME!
private static int	M	DOCUMENT ME!
private static float	MAX_ALLOWED_DEVIATION	DOCUMENT ME!
private static float	MIN_ALLOWED_DEVIATION	DOCUMENT ME!
private static int	P	DOCUMENT ME!
private javax.swing.JRadioButton	posteriorPt	DOCUMENT ME!
private WildMagic.LibFoundation.Mathematics.Vector3f	posteriorPt3Df	DOCUMENT ME!
private static int	R	DOCUMENT ME!
private javax.swing.JRadioButton	rightPt	DOCUMENT ME!
private WildMagic.LibFoundation.Mathematics.Vector3f	rightPt3Df	DOCUMENT ME!
private static int	S	DOCUMENT ME!
private static long	serialVersionUID	Use serialVersionUID for interoperability.
private javax.swing.JButton	setTalairachButton	DOCUMENT ME!
private javax.swing.JRadioButton	superiorPt	DOCUMENT ME!
private WildMagic.LibFoundation.Mathematics.Vector3f	superiorPt3Df	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogTalairach(ViewJFrameTriImage theParentFrame, ModelImage im)	This method creates a dialog for selecting markers used for generating a Talairach view image from an AC-PC aligned view image.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(java.awt.event.ActionEvent event)	If user clicks "Set", sets point here and in component image.
private void	convertToTalairach()	Creates Talairach image based on points that were set in component images.
private void	init()	Initializes GUI components of dialog.
private void	setAnteriorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)	Sets anterior label based on the point.
private void	setInferiorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)	Sets inferior label based on the point.
private void	setLeftPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)	Sets left label based on the point.
private void	setPosteriorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)	Sets posterior label based on the point.
private void	setRightPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)	Sets right label based on the point.
private void	setSuperiorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)	Sets superior label based on the point.
private void	transformTalairachTrilinear(float[] imgBuffer, TransMatrix xfrm, float ires, int iXdim, int iYdim, int iZdim, float oXres, float oYres, float oZres, int oXdim, int oYdim, int oZdim, int oXlow, int oYlow, int oZlow, int oXhigh, int oYhigh, int oZhigh, ViewJProgressBar progressBar, ModelImage image)	Transforms and resamples volume using trilinear interpolation.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

Constant Field Values

MAX_ALLOWED_DEVIATION

private static final float MAX_ALLOWED_DEVIATION

DOCUMENT ME!

See Also:

Constant Field Values

MIN_ALLOWED_DEVIATION

private static final float MIN_ALLOWED_DEVIATION

DOCUMENT ME!

See Also:

Constant Field Values

R

private static final int R

DOCUMENT ME!

See Also:

Constant Field Values

L

private static final int L

DOCUMENT ME!

See Also:

Constant Field Values

A

private static final int A

DOCUMENT ME!

See Also:

Constant Field Values

M

private static final int M

DOCUMENT ME!

See Also:

Constant Field Values

P

private static final int P

DOCUMENT ME!

See Also:

Constant Field Values

I

private static final int I

DOCUMENT ME!

See Also:

Constant Field Values

S

private static final int S

DOCUMENT ME!

See Also:

Constant Field Values

ATLAS_FRONT_TO_AC

private static final float ATLAS_FRONT_TO_AC

DOCUMENT ME!

See Also:

Constant Field Values

ATLAS_PC_TO_BACK

private static final float ATLAS_PC_TO_BACK

DOCUMENT ME!

See Also:

Constant Field Values

ATLAS_BOT_TO_AC

private static final float ATLAS_BOT_TO_AC

DOCUMENT ME!

See Also:

Constant Field Values

ATLAS_AC_TO_TOP

private static final float ATLAS_AC_TO_TOP

DOCUMENT ME!

See Also:

Constant Field Values

ATLAS_AC_TO_LAT

private static final float ATLAS_AC_TO_LAT

DOCUMENT ME!

See Also:

Constant Field Values

anteriorPt

private javax.swing.JRadioButton anteriorPt

DOCUMENT ME!

anteriorPt3Df

private WildMagic.LibFoundation.Mathematics.Vector3f anteriorPt3Df

DOCUMENT ME!

applyTalairachButton

private javax.swing.JButton applyTalairachButton

DOCUMENT ME!

cancelTalairachButton

private javax.swing.JButton cancelTalairachButton

DOCUMENT ME!

clearTalairachButton

private javax.swing.JButton clearTalairachButton

DOCUMENT ME!

frame

private ViewJFrameTriImage frame

DOCUMENT ME!

haveAnteriorPt

private boolean haveAnteriorPt

DOCUMENT ME!

haveInferiorPt

private boolean haveInferiorPt

DOCUMENT ME!

haveLeftPt

private boolean haveLeftPt

DOCUMENT ME!

havePosteriorPt

private boolean havePosteriorPt

DOCUMENT ME!

haveRightPt

private boolean haveRightPt

DOCUMENT ME!

haveSuperiorPt

private boolean haveSuperiorPt

DOCUMENT ME!

image

private ModelImage image

DOCUMENT ME!

inferiorPt

private javax.swing.JRadioButton inferiorPt

DOCUMENT ME!

inferiorPt3Df

private WildMagic.LibFoundation.Mathematics.Vector3f inferiorPt3Df

DOCUMENT ME!

leftPt

private javax.swing.JRadioButton leftPt

DOCUMENT ME!

leftPt3Df

private WildMagic.LibFoundation.Mathematics.Vector3f leftPt3Df

DOCUMENT ME!

posteriorPt

private javax.swing.JRadioButton posteriorPt

DOCUMENT ME!

posteriorPt3Df

private WildMagic.LibFoundation.Mathematics.Vector3f posteriorPt3Df

DOCUMENT ME!

rightPt

private javax.swing.JRadioButton rightPt

DOCUMENT ME!

rightPt3Df

private WildMagic.LibFoundation.Mathematics.Vector3f rightPt3Df

DOCUMENT ME!

setTalairachButton

private javax.swing.JButton setTalairachButton

DOCUMENT ME!

superiorPt

private javax.swing.JRadioButton superiorPt

DOCUMENT ME!

superiorPt3Df

private WildMagic.LibFoundation.Mathematics.Vector3f superiorPt3Df

DOCUMENT ME!

Constructor Detail

JDialogTalairach

public JDialogTalairach(ViewJFrameTriImage theParentFrame,
                        ModelImage im)

This method creates a dialog for selecting markers used for generating a Talairach view image from an AC-PC aligned view image.

Parameters:

theParentFrame - The tri planar view frame that called this dialog.

im - Image to generate a Talairach view from.

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

If user clicks "Set", sets point here and in component image. If user clicks "Clear", clears point here and in component image. If user clicks "Apply", creates new Talairach image based on points. If user clicks "Cancel", disposes this dialog.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class JDialogBase

Parameters:

event - Event that triggered this method.

convertToTalairach

private void convertToTalairach()

Creates Talairach image based on points that were set in component images.

init

private void init()

Initializes GUI components of dialog.

setAnteriorPt

private void setAnteriorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)

Sets anterior label based on the point. Enables "Apply" if all points have been set.

Parameters:

pt - Point that was set.

setInferiorPt

private void setInferiorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)

Sets inferior label based on the point. Enables "Apply" if all points have been set.

Parameters:

pt - Point that was set.

setLeftPt

private void setLeftPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)

Sets left label based on the point. Enables "Apply" if all points have been set.

Parameters:

pt - Point that was set.

setPosteriorPt

private void setPosteriorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)

Sets posterior label based on the point. Enables "Apply" if all points have been set.

Parameters:

pt - Point that was set.

setRightPt

private void setRightPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)

Sets right label based on the point. Enables "Apply" if all points have been set.

Parameters:

pt - Point that was set.

setSuperiorPt

private void setSuperiorPt(WildMagic.LibFoundation.Mathematics.Vector3f pt)

Sets superior label based on the point. Enables "Apply" if all points have been set.

Parameters:

pt - Point that was set.

transformTalairachTrilinear

private void transformTalairachTrilinear(float[] imgBuffer,
                                         TransMatrix xfrm,
                                         float ires,
                                         int iXdim,
                                         int iYdim,
                                         int iZdim,
                                         float oXres,
                                         float oYres,
                                         float oZres,
                                         int oXdim,
                                         int oYdim,
                                         int oZdim,
                                         int oXlow,
                                         int oYlow,
                                         int oZlow,
                                         int oXhigh,
                                         int oYhigh,
                                         int oZhigh,
                                         ViewJProgressBar progressBar,
                                         ModelImage image)

Transforms and resamples volume using trilinear interpolation.

Parameters:

imgBuffer - Image array.

xfrm - Transformation matrix to be applied.

ires - In resolution (same in all dimensions).

iXdim - In X dimension.

iYdim - In Y dimension.

iZdim - In Z dimension.

oXres - Out X resolution.

oYres - Out Y resolution.

oZres - Out Z resolution.

oXdim - Out X dimension.

oYdim - Out Y dimension.

oZdim - Out Z dimension.

oXlow - Out X low.

oYlow - Out Y low.

oZlow - Out Z low.

oXhigh - Out X high.

oYhigh - Out Y high.

oZhigh - Out Z high.

progressBar - Progress bar.

image - Image.