java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogRegistrationBSpline
extends JDialogScriptableBase
implements AlgorithmInterface, ActionDiscovery
```
This class is used to display the options to the user for performing 2D, 3D, and 2.5D B-Spline registration. In the case of 2D and 3D, a separate target image is specified. In the case of 2.5D, the target image (slice) is selected from the input source image. The registration is always performed against the target image so the output registered image has the values from the input source image but the dimensions of the target for 2D/3D and the dimensions of the source image for 2.5D. The same dialog is presented for 2D and 3D. The dialog is nearly the same for 2.5D except for how the target slice is selected.

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`static class`	`JDialogRegistrationBSpline.Controls`	Private class which holds dialog controls associated with the values in the AlgorithmRegBSpline.Options class for a "pass" of registration.

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private java.lang.String`	`kStringDimension`	DOCUMENT ME
`private java.lang.String[]`	`m_akNamesCompatibleTargetImages`	Contains names of compatible target images that can be registered to the input source image for 2D/3D registration.
`private boolean`	`m_bCreateDeformationImage`	Flag set if the deformation computation is to be performed.
`private int`	`m_iTargetSlice`	Index of the slice from the source image to use for 2.5 registration.
`private AlgorithmRegBSpline`	`m_kAlgorithmReg`	Flag set if the deformation computation is to be performed.
`private javax.swing.JCheckBox`	`m_kCheckCreateDeformationImage`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`m_kCheckMultiPass`	DOCUMENT ME!
`private javax.swing.JComboBox`	`m_kComboBoxCostFunction`	DOCUMENT ME!
`private javax.swing.JComboBox`	`m_kComboBoxTargetImage`	Controls displayed in the dialog box.
`private javax.swing.JComboBox`	`m_kComboBoxTargetSlice`	DOCUMENT ME!
`private JDialogRegistrationBSpline.Controls`	`m_kControlsPass1`	Container for controls to select the parameters for the first pass of registration.
`private JDialogRegistrationBSpline.Controls`	`m_kControlsPass2`	Container for controls to select the parameters for the optional second pass of registration.
`private ModelImage`	`m_kImageDef`	Reference to new image creatd with computed deformation resulting from registration.
`private ModelImage`	`m_kImageReg`	Reference to new image created with result of registration of source image.
`private ModelImage`	`m_kImageSrc`	Reference to the input source image.
`private ModelImage`	`m_kImageTrg`	Reference to the selected target image.
`private javax.swing.JLabel`	`m_kLabelIterationsPass1`	DOCUMENT ME!
`private javax.swing.JLabel`	`m_kLabelIterationsPass2`	DOCUMENT ME!
`private javax.swing.JLabel`	`m_kLabelOptionsPass1`	DOCUMENT ME!
`private javax.swing.JLabel`	`m_kLabelOptionsPass2`	DOCUMENT ME!
`private AlgorithmRegBSpline.Options`	`m_kOptionsPass1`	Reference to parameters to use for first pass of registration.
`private AlgorithmRegBSpline.Options`	`m_kOptionsPass2`	Reference to parameters to use for optional second pass of registration.
`private javax.swing.JRadioButton`	`m_kRadioSliceAdjacent`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`m_kRadioSliceReference`	DOCUMENT ME!
`private RegistrationMeasure`	`m_kRegMeasure`	Reference to concrete implementation of the RegistrationMeasure abstract class which defines the particular measure to use during registration.
`private ViewUserInterface`	`m_kUI`	Used for scripting and to access the currently registered images.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogRegistrationBSpline()`	Empty constructor needed for dynamic instantiation.
`JDialogRegistrationBSpline(java.awt.Frame kParentFrame, ModelImage kImageSrc, java.lang.String[] akNamesCompatibleTargetImages)`	Creates new registration dialog.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	Runs the algorithm.
`ParameterTable`	`createInputParameters()`	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in `setGUIFromParams()`).
`ParameterTable`	`createOutputParameters()`	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
`protected void`	`doPostAlgorithmActions()`	Store the result image in the script runner's image table now that the action execution is finished.
`ActionMetadata`	`getActionMetadata()`	Return meta-information about this discoverable action for categorization and labeling purposes.
`static java.lang.String[]`	`getNamesCompatibleTargetImages(ModelImage kImageSrc)`	Find the frame images that are compatible as targets with the specified source image for the purpose of B-spline registration.
`java.lang.String`	`getOutputImageName(java.lang.String imageParamName)`	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
`private void`	`initControls()`	Initializes the GUI components and displays the dialog.
`boolean`	`isActionComplete()`	Returns whether the action has successfully completed its execution.
`private boolean`	`isRefImageSourceSlice()`	Convenience method to determine if this is a 2.5D registration where the reference (target) image is once of the slices in the source image.
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	Implementation of JDialogBase abstract method.
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.
`private void`	`userSetCostFunction()`	Called to create the RegistrationMeasure-derived class associated with the current selection in the combo box of possible registration measures.
`private void`	`userSetDefaults()`	Called to reset all of the controls to their default values.
`private void`	`userSetMultiPassControls()`	Called to setup controls passed on the current state of the check box for selecting single- or two-pass registration.
`private void`	`userSetRefImage(ModelImage image)`	Accessor to set the target image.
`private void`	`userSetTargetSlice()`	Called whenever the user changes the selection of the target slice for 2.5D image registration.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - kStringDimension
```
private java.lang.String kStringDimension
```
    DOCUMENT ME.*
  - m_akNamesCompatibleTargetImages
```
private java.lang.String[] m_akNamesCompatibleTargetImages
```
    Contains names of compatible target images that can be registered to the input source image for 2D/3D registration. Null reference for 2.5D registration.
  - m_bCreateDeformationImage
```
private boolean m_bCreateDeformationImage
```
    Flag set if the deformation computation is to be performed. Reflects the state of the associated check box in the dialog.
  - m_iTargetSlice
```
private int m_iTargetSlice
```
    Index of the slice from the source image to use for 2.5 registration. The index may be -1 to indicate registration is with adjacent slice. Reflects the state of the target slice radio buttons and the combo box if a particular reference slice is to be used.
  - m_kAlgorithmReg
```
private AlgorithmRegBSpline m_kAlgorithmReg
```
    Flag set if the deformation computation is to be performed.
  - m_kCheckCreateDeformationImage
```
private javax.swing.JCheckBox m_kCheckCreateDeformationImage
```
    DOCUMENT ME!
  - m_kCheckMultiPass
```
private javax.swing.JCheckBox m_kCheckMultiPass
```
    DOCUMENT ME!
  - m_kComboBoxCostFunction
```
private javax.swing.JComboBox m_kComboBoxCostFunction
```
    DOCUMENT ME!
  - m_kComboBoxTargetImage
```
private javax.swing.JComboBox m_kComboBoxTargetImage
```
    Controls displayed in the dialog box. All of these controls are always displayed unless otherwise noted.
  - m_kComboBoxTargetSlice
```
private javax.swing.JComboBox m_kComboBoxTargetSlice
```
    DOCUMENT ME!
  - m_kControlsPass1
```
private JDialogRegistrationBSpline.Controls m_kControlsPass1
```
    Container for controls to select the parameters for the first pass of registration. These controls are always displayed.
  - m_kControlsPass2
```
private JDialogRegistrationBSpline.Controls m_kControlsPass2
```
    Container for controls to select the parameters for the optional second pass of registration. These controls are created but are only displayed when the check box is selected for two-pass registration.
  - m_kImageDef
```
private ModelImage m_kImageDef
```
    Reference to new image creatd with computed deformation resulting from registration. Null reference is deformation computation is not selected.
  - m_kImageReg
```
private ModelImage m_kImageReg
```
    Reference to new image created with result of registration of source image. Cannot be null.
  - m_kImageSrc
```
private ModelImage m_kImageSrc
```
    Reference to the input source image. Cannot be null.
  - m_kImageTrg
```
private ModelImage m_kImageTrg
```
    Reference to the selected target image. Null reference for 2.5D registration.
  - m_kLabelIterationsPass1
```
private javax.swing.JLabel m_kLabelIterationsPass1
```
    DOCUMENT ME!
  - m_kLabelIterationsPass2
```
private javax.swing.JLabel m_kLabelIterationsPass2
```
    DOCUMENT ME!
  - m_kLabelOptionsPass1
```
private javax.swing.JLabel m_kLabelOptionsPass1
```
    DOCUMENT ME!
  - m_kLabelOptionsPass2
```
private javax.swing.JLabel m_kLabelOptionsPass2
```
    DOCUMENT ME!
  - m_kOptionsPass1
```
private AlgorithmRegBSpline.Options m_kOptionsPass1
```
    Reference to parameters to use for first pass of registration. Cannot be null.
  - m_kOptionsPass2
```
private AlgorithmRegBSpline.Options m_kOptionsPass2
```
    Reference to parameters to use for optional second pass of registration. Null reference if only a single pass of registration is to be performed.
  - m_kRadioSliceAdjacent
```
private javax.swing.JRadioButton m_kRadioSliceAdjacent
```
    DOCUMENT ME!
  - m_kRadioSliceReference
```
private javax.swing.JRadioButton m_kRadioSliceReference
```
    DOCUMENT ME!
  - m_kRegMeasure
```
private RegistrationMeasure m_kRegMeasure
```
    Reference to concrete implementation of the RegistrationMeasure abstract class which defines the particular measure to use during registration. Cannot be null. Reflects the selection in the associated combo box in the dialog.
  - m_kUI
```
private ViewUserInterface m_kUI
```
    Used for scripting and to access the currently registered images.
- Constructor Detail
  - JDialogRegistrationBSpline
```
public JDialogRegistrationBSpline()
```
    Empty constructor needed for dynamic instantiation. Used primarily for the script to store variables and run the algorithm. No actual dialog will appear but the set up info and result image will be stored here.
  - JDialogRegistrationBSpline
```
public JDialogRegistrationBSpline(java.awt.Frame kParentFrame,
                                  ModelImage kImageSrc,
                                  java.lang.String[] akNamesCompatibleTargetImages)
```
    Creates new registration dialog.
    
    Parameters:
    
    kParentFrame - Parent frame
    
    kImageSrc - Source image
    
    akNamesCompatibleTargetImages - String[] Array containing the names of target images which are compatible for registering to the input source image. This list must contain at least one image name and the list must not contain the name of the input source image. A target image is used for 2D/3D registration. If this reference is null, then the registration is for 2.5 meaning the target image will be a selected slice from within the 3D image.
- Method Detail
  - getNamesCompatibleTargetImages
```
public static java.lang.String[] getNamesCompatibleTargetImages(ModelImage kImageSrc)
```
    Find the frame images that are compatible as targets with the specified source image for the purpose of B-spline registration.
    
    Parameters:
    
    kImageSrc - ModelImage Reference to the source image.
    
    Returns:
    
    String[] Array of names of compatible images.
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    Implementation of JDialogBase abstract method. Method to handle item events.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    event - Event that caused the method to fire
  - callAlgorithm
```
protected void callAlgorithm()
```
    Runs the algorithm.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - doPostAlgorithmActions
```
protected void doPostAlgorithmActions()
```
    Store the result image in the script runner's image table now that the action execution is finished.
    
    Overrides:
    
    doPostAlgorithmActions in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - initControls
```
private void initControls()
```
    Initializes the GUI components and displays the dialog.
  - isRefImageSourceSlice
```
private boolean isRefImageSourceSlice()
```
    Convenience method to determine if this is a 2.5D registration where the reference (target) image is once of the slices in the source image.
    
    Returns:
    
    boolean
  - userSetCostFunction
```
private void userSetCostFunction()
```
    Called to create the RegistrationMeasure-derived class associated with the current selection in the combo box of possible registration measures.
  - userSetDefaults
```
private void userSetDefaults()
```
    Called to reset all of the controls to their default values.
  - userSetMultiPassControls
```
private void userSetMultiPassControls()
```
    Called to setup controls passed on the current state of the check box for selecting single- or two-pass registration.
  - userSetRefImage
```
private void userSetRefImage(ModelImage image)
```
    Accessor to set the target image.
    
    Parameters:
    
    image - The target image.
  - userSetTargetSlice
```
private void userSetTargetSlice()
```
    Called whenever the user changes the selection of the target slice for 2.5D image registration.
  - getActionMetadata
```
public ActionMetadata getActionMetadata()
```
    Return meta-information about this discoverable action for categorization and labeling purposes.
    
    Specified by:
    
    getActionMetadata in interface ActionDiscovery
    
    Returns:
    
    Metadata for this action.
  - createInputParameters
```
public ParameterTable createInputParameters()
```
    Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
    
    Specified by:
    
    createInputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the inputs of this algorithm.
  - createOutputParameters
```
public ParameterTable createOutputParameters()
```
    Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
    
    Specified by:
    
    createOutputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the outputs of this algorithm.
  - getOutputImageName
```
public java.lang.String getOutputImageName(java.lang.String imageParamName)
```
    Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
    
    Specified by:
    
    getOutputImageName in interface ActionDiscovery
    
    Parameters:
    
    imageParamName - The output image parameter label for which to get the image name.
    
    Returns:
    
    The image name of the requested output image parameter label.
  - isActionComplete
```
public boolean isActionComplete()
```
    Returns whether the action has successfully completed its execution.
    
    Specified by:
    
    isActionComplete in interface ActionDiscovery
    
    Returns:
    
    True, if the action is complete. False, if the action failed or is still running.

Class JDialogRegistrationBSpline

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

Field Detail

serialVersionUID

kStringDimension

m_akNamesCompatibleTargetImages

m_bCreateDeformationImage

m_iTargetSlice

m_kAlgorithmReg

m_kCheckCreateDeformationImage

m_kCheckMultiPass

m_kComboBoxCostFunction

m_kComboBoxTargetImage

m_kComboBoxTargetSlice

m_kControlsPass1

m_kControlsPass2

m_kImageDef

m_kImageReg

m_kImageSrc

m_kImageTrg

m_kLabelIterationsPass1

m_kLabelIterationsPass2

m_kLabelOptionsPass1

m_kLabelOptionsPass2

m_kOptionsPass1

m_kOptionsPass2

m_kRadioSliceAdjacent

m_kRadioSliceReference

m_kRegMeasure

m_kUI

Constructor Detail

JDialogRegistrationBSpline

JDialogRegistrationBSpline

Method Detail

getNamesCompatibleTargetImages

actionPerformed

algorithmPerformed

itemStateChanged

callAlgorithm

doPostAlgorithmActions

setGUIFromParams

storeParamsFromGUI

initControls

isRefImageSourceSlice

userSetCostFunction

userSetDefaults

userSetMultiPassControls

userSetRefImage

userSetTargetSlice

getActionMetadata

createInputParameters

createOutputParameters

getOutputImageName

isActionComplete