java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmScaleSaliency
extends AlgorithmBase
```
Original source code in C and MATLAB is Copyright 1998-2004 by Timor Kadir Version 1.5 Kadir/Brady Feature detector (Scale Saliency) Code For non-commercial use only Ported by to Java by William Gandler References: 1.) Saliency, Scale, and Image Description Timor Kadir and Michael Brady. International Journal of Computer Vision. 45 (2):83-105, November 2001. 2.) Scale, Saliency, and Scene Description Timor Kadir Department of Engineering Science Robotics Research Group, University of Oxford, Trinity Term, 2002. 3.) An affine invariant salient region detector Timor Kadir, Andrew Zisserman, and Michael Brady, European Conference on Computer Vision 2004. Pages 228 - 241.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

private class AlgorithmScaleSaliency.sixItems

private class AlgorithmScaleSaliency.sixItemsComparator
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private static int`	`ANTI_ALIASED_SAMPLING_MODE`
`private boolean`	`fastplog`
`private int`	`mode`
`private int`	`nbins`
`private static int`	`NORMAL_MODE`
`private static int`	`PARZEN_WINDOW_MODE`
`private double[]`	`plogpArray`
`private static int`	`plogpres`
`private double`	`sigma`
`private int`	`sliceSize`
`private int`	`startScale`
`private int`	`stopScale`
`private double`	`wt`
`private int`	`xDim`
`private int`	`yDim`
`private double`	`yt`

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmScaleSaliency()`	AlgorithmScaleSaliency - default constructor.
`AlgorithmScaleSaliency(ModelImage srcImg, int startScale, int stopScale, int mode, int nbins, double sigma, double wt, double yt)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private java.util.Vector<AlgorithmScaleSaliency.sixItems>`	`calcSalScale1D(short[] imageBuffer)`
`private java.util.Vector<AlgorithmScaleSaliency.sixItems>`	`calcSalScale1DAA(short[] imageBuffer)`
`private java.util.Vector<AlgorithmScaleSaliency.sixItems>`	`calcSalScale1DParzen(short[] imageBuffer)`
`private java.util.Vector<AlgorithmScaleSaliency.sixItems>`	`calcSalScale2D(short[] imageBuffer, short[] imageBuffer2)`
`private java.util.Vector<AlgorithmScaleSaliency.sixItems>`	`calcSalScale3D(short[] imageBuffer, short[] imageBuffer2, short[] imageBuffer3)`
`void`	`finalize()`	finalize -
`private java.util.Vector<AlgorithmScaleSaliency.sixItems>`	`greedyCluster(java.util.Vector<AlgorithmScaleSaliency.sixItems> Y)`
`private double`	`plogp(double p)`
`void`	`runAlgorithm()`	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

NORMAL_MODE
```
private static final int NORMAL_MODE
```
See Also:

Constant Field Values

PARZEN_WINDOW_MODE
```
private static final int PARZEN_WINDOW_MODE
```
See Also:

Constant Field Values

ANTI_ALIASED_SAMPLING_MODE
```
private static final int ANTI_ALIASED_SAMPLING_MODE
```
See Also:

Constant Field Values

mode
```
private int mode
```

startScale
```
private int startScale
```

stopScale
```
private int stopScale
```

nbins
```
private int nbins
```

sigma
```
private double sigma
```

wt
```
private double wt
```

yt
```
private double yt
```

fastplog
```
private boolean fastplog
```

plogpres
```
private static final int plogpres
```
See Also:

Constant Field Values

plogpArray
```
private double[] plogpArray
```

xDim
```
private int xDim
```

yDim
```
private int yDim
```

sliceSize
```
private int sliceSize
```

Constructor Detail

AlgorithmScaleSaliency
```
public AlgorithmScaleSaliency()
```
AlgorithmScaleSaliency - default constructor.

AlgorithmScaleSaliency

public AlgorithmScaleSaliency(ModelImage srcImg,
                              int startScale,
                              int stopScale,
                              int mode,
                              int nbins,
                              double sigma,
                              double wt,
                              double yt)

Parameters:: srcImg - Source image; startScale -; stopScale -; mode -; nbins - Number of bins (has 256 for Parzen window PDF estimation); sigma - for Parzen window; wt - Threshold on inter-scale saliency values; yt - Fraction of saliency maximum value used as threshold

Method Detail

finalize
```
public void finalize()
```
finalize -

Overrides:

finalize in class AlgorithmBase

runAlgorithm
```
public void runAlgorithm()
```
Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

calcSalScale1D

private java.util.Vector<AlgorithmScaleSaliency.sixItems> calcSalScale1D(short[] imageBuffer)

calcSalScale1DAA

private java.util.Vector<AlgorithmScaleSaliency.sixItems> calcSalScale1DAA(short[] imageBuffer)

calcSalScale1DParzen

private java.util.Vector<AlgorithmScaleSaliency.sixItems> calcSalScale1DParzen(short[] imageBuffer)

calcSalScale2D

private java.util.Vector<AlgorithmScaleSaliency.sixItems> calcSalScale2D(short[] imageBuffer,
                                                                         short[] imageBuffer2)

calcSalScale3D

private java.util.Vector<AlgorithmScaleSaliency.sixItems> calcSalScale3D(short[] imageBuffer,
                                                                         short[] imageBuffer2,
                                                                         short[] imageBuffer3)

greedyCluster

private java.util.Vector<AlgorithmScaleSaliency.sixItems> greedyCluster(java.util.Vector<AlgorithmScaleSaliency.sixItems> Y)

plogp
```
private double plogp(double p)
```

Modifier and Type	Class	Description
`private class`	`AlgorithmScaleSaliency.sixItems`
`private class`	`AlgorithmScaleSaliency.sixItemsComparator`

Class AlgorithmScaleSaliency

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

NORMAL_MODE

PARZEN_WINDOW_MODE

ANTI_ALIASED_SAMPLING_MODE

mode

startScale

stopScale

nbins

sigma

wt

yt

fastplog

plogpres

plogpArray

xDim

yDim

sliceSize

Constructor Detail

AlgorithmScaleSaliency

AlgorithmScaleSaliency

Method Detail

finalize

runAlgorithm

calcSalScale1D

calcSalScale1DAA

calcSalScale1DParzen

calcSalScale2D

calcSalScale3D

greedyCluster

plogp