java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogHaralickTexture

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogHaralickTexture
extends JDialogScriptableBase
implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
```
Dialog to get user input, then call the algorithm.

Version:

0.4 April 14, 2009

Author:

William Gandler

See Also:

AlgorithmHaralickTexture, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean`	`asm`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`asmCheckBox`	DOCUMENT ME!
`private static int`	`BLUE_OFFSET`	Blue channel.
`private javax.swing.JRadioButton`	`blueButton`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`colorGroup`	DOCUMENT ME!
`private javax.swing.JPanel`	`colorPanel`	DOCUMENT ME!
`private boolean`	`concatenate`	If true, only one result image with the original source concatenated with the calculated features.
`private javax.swing.JCheckBox`	`concatenateCheckBox`
`private boolean`	`contrast`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`contrastCheckBox`	DOCUMENT ME!
`private boolean`	`correlation`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`correlationCheckBox`	DOCUMENT ME!
`private boolean`	`dissimilarity`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`dissimilarityCheckBox`	DOCUMENT ME!
`private boolean`	`energy`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`energyCheckBox`	DOCUMENT ME!
`private boolean`	`entropy`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`entropyCheckBox`	DOCUMENT ME!
`private boolean`	`ew`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`ewCheckBox`	DOCUMENT ME!
`private static int`	`GREEN_OFFSET`	Green channel.
`private javax.swing.JRadioButton`	`greenButton`	DOCUMENT ME!
`private int`	`greyLevels`	Number of grey levels used if data must be rescaled
`private boolean`	`homogeneity`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`homogeneityCheckBox`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`invariantCheckBox`	DOCUMENT ME!
`private boolean`	`invariantDir`	DOCUMENT ME!
`private boolean`	`inverseOrder1`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`inverseOrder1CheckBox`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelOffsetDistance`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelRescaling`
`private javax.swing.JLabel`	`labelWindowSize`	DOCUMENT ME!
`private boolean`	`maxProbability`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`maxProbabilityCheckBox`	DOCUMENT ME!
`private boolean`	`mean`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`meanCheckBox`	DOCUMENT ME!
`private boolean`	`nesw`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`neswCheckBox`	DOCUMENT ME!
`private boolean`	`ns`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`nsCheckBox`	DOCUMENT ME!
`private int`	`numDirections`	DOCUMENT ME!
`private int`	`numOperators`	DOCUMENT ME!
`private int`	`offsetDistance`	DOCUMENT ME!
`private boolean`	`promenance`
`private javax.swing.JCheckBox`	`promenanceCheckBox`
`private static int`	`RED_OFFSET`	Red channel.
`private javax.swing.JRadioButton`	`redButton`	DOCUMENT ME!
`private ModelImage[]`	`resultImage`	DOCUMENT ME!
`private int`	`resultNumber`	DOCUMENT ME!
`private int`	`RGBOffset`	DOCUMENT ME!
`private javax.swing.JPanel`	`scalePanel`	DOCUMENT ME!
`private boolean`	`senw`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`senwCheckBox`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private boolean`	`shade`
`private javax.swing.JCheckBox`	`shadeCheckBox`
`private boolean`	`standardDeviation`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`standardDeviationCheckBox`	DOCUMENT ME!
`private javax.swing.JTextField`	`textOffsetDistance`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRescaling`
`private AlgorithmHaralickTexture`	`textureAlgo`	DOCUMENT ME!
`private javax.swing.JTextField`	`textWindowSize`	DOCUMENT ME!
`private boolean`	`variance`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`varianceCheckBox`	DOCUMENT ME!
`private int`	`windowSize`	DOCUMENT ME!
`private boolean`	`zscore`	If true, produce z score = (value - mean)/(standard deviation) output of Haralick features
`private javax.swing.JCheckBox`	`zscoreCheckBox`

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogHaralickTexture()`	Empty constructor needed for dynamic instantiation.
`JDialogHaralickTexture(java.awt.Frame theParentFrame, ModelImage im)`	Creates a new JDialogHaralickTexture object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
`ParameterTable`	`createInputParameters()`	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in `setGUIFromParams()`).
`ParameterTable`	`createOutputParameters()`	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
`protected void`	`doPostAlgorithmActions()`	Store the result image in the script runner's image table now that the action execution is finished.
`ActionMetadata`	`getActionMetadata()`	Return meta-information about this discoverable action for categorization and labeling purposes.
`private int`	`getNumDirections()`	DOCUMENT ME!
`private int`	`getNumOperators()`	DOCUMENT ME!
`java.lang.String`	`getOutputImageName(java.lang.String imageParamName)`	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
`ModelImage[]`	`getResultImage()`	Accessor that returns the image.
`private void`	`init()`	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
`boolean`	`isActionComplete()`	Returns whether the action has successfully completed its execution.
`void`	`setASM(boolean asm)`	Accessor that sets if asm operator is calculated.
`void`	`setConcatenate(boolean concatenate)`	Accessor that sets if there is only 1 result image with the original source concatenated with the calculated features
`void`	`setContrast(boolean contrast)`	Accessor that sets if the contrast operator is calculated.
`void`	`setCorrelation(boolean correlation)`	Accessor that sets if gray level coordinate matrix correlation is calculated.
`void`	`setDissimilarity(boolean dissimilarity)`	Accessor that sets if dissimilarity operator is calculated.
`void`	`setEnergy(boolean energy)`	Accessor that sets if energy operator is calculated.
`void`	`setEntropy(boolean entropy)`	Accessor that sets if entropy operator is calculated.
`void`	`setEW(boolean ew)`	Accessor that sets if east west offset direction is calculated.
`void`	`setGreyLevels(int greyLevels)`	Accessor that sets the number of grey levels if rescaling used
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setHomogeneity(boolean homogeneity)`	Accessor that sets if homogeneity operator is calculated.
`void`	`setInvariant(boolean invariantDir)`	Accessor that sets if spatially invariant offset direction is performed.
`void`	`setInverseOrder1(boolean inverseOrder1)`	Accessor that sets if the inverse difference moment of order 1 operator is called.
`void`	`setMaxProbability(boolean maxProbability)`	Accessor that sets if maximum probability operator is calculated.
`void`	`setMean(boolean mean)`	Accessor that set if the gray level coordinate matrix mean is calculated.
`void`	`setNESW(boolean nesw)`	Accessor that sets if northeast-southest offset direction is calculated.
`void`	`setNS(boolean ns)`	Accessor that sets if north south offset direction is calculated.
`void`	`setOffsetDistance(int offsetDistance)`	Accessor that sets the offset distance.
`void`	`setPromenance(boolean promenance)`	Accessor that sets if the cluster promenance is calculated
`void`	`setRGBOffset(int RGBoffset)`	Accessor that sets the RGBOffset.
`void`	`setSENW(boolean senw)`	Accessor that sets if southeast-northwest offset direction is calculated.
`void`	`setShade(boolean shade)`	Accessor that sets if the cluster shade is calculated
`void`	`setStandardDeviation(boolean standardDeviation)`	Accessor that sets if gray level coordinate matrix standard deviation is calculated.
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`void`	`setVariance(boolean variance)`	Accessor that sets if the gray level coordinate matrix variance is calculated.
`void`	`setWindowSize(int windowSize)`	Accessor that sets the window size.
`void`	`setZscore(boolean zscore)`
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun

Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface
insertScriptLine, scriptRun

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - RED_OFFSET
```
private static final int RED_OFFSET
```
    Red channel.
    
    See Also:
    
    Constant Field Values
  - GREEN_OFFSET
```
private static final int GREEN_OFFSET
```
    Green channel.
    
    See Also:
    
    Constant Field Values
  - BLUE_OFFSET
```
private static final int BLUE_OFFSET
```
    Blue channel.
    
    See Also:
    
    Constant Field Values
  - colorPanel
```
private javax.swing.JPanel colorPanel
```
    DOCUMENT ME!
  - colorGroup
```
private javax.swing.ButtonGroup colorGroup
```
    DOCUMENT ME!
  - redButton
```
private javax.swing.JRadioButton redButton
```
    DOCUMENT ME!
  - greenButton
```
private javax.swing.JRadioButton greenButton
```
    DOCUMENT ME!
  - blueButton
```
private javax.swing.JRadioButton blueButton
```
    DOCUMENT ME!
  - RGBOffset
```
private int RGBOffset
```
    DOCUMENT ME!
  - asm
```
private boolean asm
```
    DOCUMENT ME!
  - asmCheckBox
```
private javax.swing.JCheckBox asmCheckBox
```
    DOCUMENT ME!
  - contrast
```
private boolean contrast
```
    DOCUMENT ME!
  - contrastCheckBox
```
private javax.swing.JCheckBox contrastCheckBox
```
    DOCUMENT ME!
  - correlation
```
private boolean correlation
```
    DOCUMENT ME!
  - correlationCheckBox
```
private javax.swing.JCheckBox correlationCheckBox
```
    DOCUMENT ME!
  - dissimilarity
```
private boolean dissimilarity
```
    DOCUMENT ME!
  - dissimilarityCheckBox
```
private javax.swing.JCheckBox dissimilarityCheckBox
```
    DOCUMENT ME!
  - energy
```
private boolean energy
```
    DOCUMENT ME!
  - energyCheckBox
```
private javax.swing.JCheckBox energyCheckBox
```
    DOCUMENT ME!
  - entropy
```
private boolean entropy
```
    DOCUMENT ME!
  - entropyCheckBox
```
private javax.swing.JCheckBox entropyCheckBox
```
    DOCUMENT ME!
  - ew
```
private boolean ew
```
    DOCUMENT ME!
  - ewCheckBox
```
private javax.swing.JCheckBox ewCheckBox
```
    DOCUMENT ME!
  - homogeneity
```
private boolean homogeneity
```
    DOCUMENT ME!
  - homogeneityCheckBox
```
private javax.swing.JCheckBox homogeneityCheckBox
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - invariantCheckBox
```
private javax.swing.JCheckBox invariantCheckBox
```
    DOCUMENT ME!
  - invariantDir
```
private boolean invariantDir
```
    DOCUMENT ME!
  - inverseOrder1
```
private boolean inverseOrder1
```
    DOCUMENT ME!
  - inverseOrder1CheckBox
```
private javax.swing.JCheckBox inverseOrder1CheckBox
```
    DOCUMENT ME!
  - labelOffsetDistance
```
private javax.swing.JLabel labelOffsetDistance
```
    DOCUMENT ME!
  - labelWindowSize
```
private javax.swing.JLabel labelWindowSize
```
    DOCUMENT ME!
  - maxProbability
```
private boolean maxProbability
```
    DOCUMENT ME!
  - maxProbabilityCheckBox
```
private javax.swing.JCheckBox maxProbabilityCheckBox
```
    DOCUMENT ME!
  - mean
```
private boolean mean
```
    DOCUMENT ME!
  - meanCheckBox
```
private javax.swing.JCheckBox meanCheckBox
```
    DOCUMENT ME!
  - nesw
```
private boolean nesw
```
    DOCUMENT ME!
  - neswCheckBox
```
private javax.swing.JCheckBox neswCheckBox
```
    DOCUMENT ME!
  - ns
```
private boolean ns
```
    DOCUMENT ME!
  - nsCheckBox
```
private javax.swing.JCheckBox nsCheckBox
```
    DOCUMENT ME!
  - numDirections
```
private int numDirections
```
    DOCUMENT ME!
  - numOperators
```
private int numOperators
```
    DOCUMENT ME!
  - offsetDistance
```
private int offsetDistance
```
    DOCUMENT ME!
  - resultImage
```
private ModelImage[] resultImage
```
    DOCUMENT ME!
  - resultNumber
```
private int resultNumber
```
    DOCUMENT ME!
  - scalePanel
```
private javax.swing.JPanel scalePanel
```
    DOCUMENT ME!
  - senw
```
private boolean senw
```
    DOCUMENT ME!
  - senwCheckBox
```
private javax.swing.JCheckBox senwCheckBox
```
    DOCUMENT ME!
  - standardDeviation
```
private boolean standardDeviation
```
    DOCUMENT ME!
  - standardDeviationCheckBox
```
private javax.swing.JCheckBox standardDeviationCheckBox
```
    DOCUMENT ME!
  - textOffsetDistance
```
private javax.swing.JTextField textOffsetDistance
```
    DOCUMENT ME!
  - textureAlgo
```
private AlgorithmHaralickTexture textureAlgo
```
    DOCUMENT ME!
  - textWindowSize
```
private javax.swing.JTextField textWindowSize
```
    DOCUMENT ME!
  - variance
```
private boolean variance
```
    DOCUMENT ME!
  - varianceCheckBox
```
private javax.swing.JCheckBox varianceCheckBox
```
    DOCUMENT ME!
  - shade
```
private boolean shade
```
  - shadeCheckBox
```
private javax.swing.JCheckBox shadeCheckBox
```
  - promenance
```
private boolean promenance
```
  - promenanceCheckBox
```
private javax.swing.JCheckBox promenanceCheckBox
```
  - windowSize
```
private int windowSize
```
    DOCUMENT ME!
  - labelRescaling
```
private javax.swing.JLabel labelRescaling
```
  - textRescaling
```
private javax.swing.JTextField textRescaling
```
  - greyLevels
```
private int greyLevels
```
    Number of grey levels used if data must be rescaled
  - concatenateCheckBox
```
private javax.swing.JCheckBox concatenateCheckBox
```
  - concatenate
```
private boolean concatenate
```
    If true, only one result image with the original source concatenated with the calculated features.
  - zscoreCheckBox
```
private javax.swing.JCheckBox zscoreCheckBox
```
  - zscore
```
private boolean zscore
```
    If true, produce z score = (value - mean)/(standard deviation) output of Haralick features
- Constructor Detail
  - JDialogHaralickTexture
```
public JDialogHaralickTexture()
```
    Empty constructor needed for dynamic instantiation.
  - JDialogHaralickTexture
```
public JDialogHaralickTexture(java.awt.Frame theParentFrame,
                              ModelImage im)
```
    Creates a new JDialogHaralickTexture object.
    
    Parameters:
    
    theParentFrame - Parent frame.
    
    im - Source image.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - getResultImage
```
public ModelImage[] getResultImage()
```
    Accessor that returns the image.
    
    Returns:
    
    The result image.
  - setASM
```
public void setASM(boolean asm)
```
    Accessor that sets if asm operator is calculated.
    
    Parameters:
    
    asm - boolean
  - setContrast
```
public void setContrast(boolean contrast)
```
    Accessor that sets if the contrast operator is calculated.
    
    Parameters:
    
    contrast - boolean
  - setCorrelation
```
public void setCorrelation(boolean correlation)
```
    Accessor that sets if gray level coordinate matrix correlation is calculated.
    
    Parameters:
    
    correlation - boolean
  - setDissimilarity
```
public void setDissimilarity(boolean dissimilarity)
```
    Accessor that sets if dissimilarity operator is calculated.
    
    Parameters:
    
    dissimilarity - boolean
  - setEnergy
```
public void setEnergy(boolean energy)
```
    Accessor that sets if energy operator is calculated.
    
    Parameters:
    
    energy - boolean
  - setEntropy
```
public void setEntropy(boolean entropy)
```
    Accessor that sets if entropy operator is calculated.
    
    Parameters:
    
    entropy - boolean
  - setEW
```
public void setEW(boolean ew)
```
    Accessor that sets if east west offset direction is calculated.
    
    Parameters:
    
    ew - boolean
  - setHomogeneity
```
public void setHomogeneity(boolean homogeneity)
```
    Accessor that sets if homogeneity operator is calculated.
    
    Parameters:
    
    homogeneity - boolean
  - setInvariant
```
public void setInvariant(boolean invariantDir)
```
    Accessor that sets if spatially invariant offset direction is performed.
    
    Parameters:
    
    invariantDir - boolean
  - setInverseOrder1
```
public void setInverseOrder1(boolean inverseOrder1)
```
    Accessor that sets if the inverse difference moment of order 1 operator is called.
    
    Parameters:
    
    inverseOrder1 - boolean
  - setMaxProbability
```
public void setMaxProbability(boolean maxProbability)
```
    Accessor that sets if maximum probability operator is calculated.
    
    Parameters:
    
    maxProbability - boolean
  - setMean
```
public void setMean(boolean mean)
```
    Accessor that set if the gray level coordinate matrix mean is calculated.
    
    Parameters:
    
    mean - boolean
  - setNESW
```
public void setNESW(boolean nesw)
```
    Accessor that sets if northeast-southest offset direction is calculated.
    
    Parameters:
    
    nesw - boolean
  - setNS
```
public void setNS(boolean ns)
```
    Accessor that sets if north south offset direction is calculated.
    
    Parameters:
    
    ns - boolean
  - setOffsetDistance
```
public void setOffsetDistance(int offsetDistance)
```
    Accessor that sets the offset distance.
    
    Parameters:
    
    offsetDistance - int
  - setSENW
```
public void setSENW(boolean senw)
```
    Accessor that sets if southeast-northwest offset direction is calculated.
    
    Parameters:
    
    senw - boolean
  - setStandardDeviation
```
public void setStandardDeviation(boolean standardDeviation)
```
    Accessor that sets if gray level coordinate matrix standard deviation is calculated.
    
    Parameters:
    
    standardDeviation - boolean
  - setVariance
```
public void setVariance(boolean variance)
```
    Accessor that sets if the gray level coordinate matrix variance is calculated.
    
    Parameters:
    
    variance - boolean
  - setShade
```
public void setShade(boolean shade)
```
    Accessor that sets if the cluster shade is calculated
    
    Parameters:
    
    shade -
  - setPromenance
```
public void setPromenance(boolean promenance)
```
    Accessor that sets if the cluster promenance is calculated
    
    Parameters:
    
    promenance -
  - setConcatenate
```
public void setConcatenate(boolean concatenate)
```
    Accessor that sets if there is only 1 result image with the original source concatenated with the calculated features
    
    Parameters:
    
    concatenate -
  - setZscore
```
public void setZscore(boolean zscore)
```
  - setWindowSize
```
public void setWindowSize(int windowSize)
```
    Accessor that sets the window size.
    
    Parameters:
    
    windowSize - int
  - setGreyLevels
```
public void setGreyLevels(int greyLevels)
```
    Accessor that sets the number of grey levels if rescaling used
    
    Parameters:
    
    greyLevels -
  - setRGBOffset
```
public void setRGBOffset(int RGBoffset)
```
    Accessor that sets the RGBOffset.
    
    Parameters:
    
    RGBoffset - DOCUMENT ME!
  - callAlgorithm
```
protected void callAlgorithm()
```
    Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - doPostAlgorithmActions
```
protected void doPostAlgorithmActions()
```
    Store the result image in the script runner's image table now that the action execution is finished.
    
    Overrides:
    
    doPostAlgorithmActions in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - getNumDirections
```
private int getNumDirections()
```
    DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - getNumOperators
```
private int getNumOperators()
```
    DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - init
```
private void init()
```
    Sets up the GUI (panels, buttons, etc) and displays it on the screen.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.
  - getActionMetadata
```
public ActionMetadata getActionMetadata()
```
    Return meta-information about this discoverable action for categorization and labeling purposes.
    
    Specified by:
    
    getActionMetadata in interface ActionDiscovery
    
    Returns:
    
    Metadata for this action.
  - createInputParameters
```
public ParameterTable createInputParameters()
```
    Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
    
    Specified by:
    
    createInputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the inputs of this algorithm.
  - createOutputParameters
```
public ParameterTable createOutputParameters()
```
    Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
    
    Specified by:
    
    createOutputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the outputs of this algorithm.
  - getOutputImageName
```
public java.lang.String getOutputImageName(java.lang.String imageParamName)
```
    Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
    
    Specified by:
    
    getOutputImageName in interface ActionDiscovery
    
    Parameters:
    
    imageParamName - The output image parameter label for which to get the image name.
    
    Returns:
    
    The image name of the requested output image parameter label.
  - isActionComplete
```
public boolean isActionComplete()
```
    Returns whether the action has successfully completed its execution.
    
    Specified by:
    
    isActionComplete in interface ActionDiscovery
    
    Returns:
    
    True, if the action is complete. False, if the action failed or is still running.

Class JDialogHaralickTexture

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface

Field Detail

serialVersionUID

RED_OFFSET

GREEN_OFFSET

BLUE_OFFSET

colorPanel

colorGroup

redButton

greenButton

blueButton

RGBOffset

asm

asmCheckBox

contrast

contrastCheckBox

correlation

correlationCheckBox

dissimilarity

dissimilarityCheckBox

energy

energyCheckBox

entropy

entropyCheckBox

ew

ewCheckBox

homogeneity

homogeneityCheckBox

image

invariantCheckBox

invariantDir

inverseOrder1

inverseOrder1CheckBox

labelOffsetDistance

labelWindowSize

maxProbability

maxProbabilityCheckBox

mean

meanCheckBox

nesw

neswCheckBox

ns

nsCheckBox

numDirections

numOperators

offsetDistance

resultImage

resultNumber

scalePanel

senw

senwCheckBox

standardDeviation

standardDeviationCheckBox