Package gov.nih.mipav.view.dialogs
Class JDialogWaveletThreshold
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- java.awt.Window
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- java.awt.Dialog
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- javax.swing.JDialog
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- gov.nih.mipav.view.dialogs.JDialogBase
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- gov.nih.mipav.view.dialogs.JDialogScriptableBase
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- gov.nih.mipav.view.dialogs.JDialogWaveletThreshold
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- All Implemented Interfaces:
AlgorithmInterface
,ScriptableActionInterface
,DialogDefaultsInterface
,ActionDiscovery
,java.awt.event.ActionListener
,java.awt.event.FocusListener
,java.awt.event.ItemListener
,java.awt.event.WindowListener
,java.awt.image.ImageObserver
,java.awt.MenuContainer
,java.io.Serializable
,java.util.EventListener
,javax.accessibility.Accessible
,javax.swing.RootPaneContainer
,javax.swing.WindowConstants
public class JDialogWaveletThreshold extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
DOCUMENT ME!- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
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Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog
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Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
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Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
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Field Summary
Fields Modifier and Type Field Description private int
cNum
or if the source image is to be replaced.private javax.swing.JComboBox
coefficientCombo
DOCUMENT ME!static int
DAUB4
underlying wavelet filter For 4 coefficients the routine daub4 is considerably faster than pwt.private int
displayLoc
DOCUMENT ME!private boolean
doWaveletImage
DOCUMENT ME!private javax.swing.JRadioButton
garrote
DOCUMENT ME!private javax.swing.JRadioButton
hard
DOCUMENT ME!static int
HARD
thresholding estimator.private ModelImage
image
DOCUMENT ME!private javax.swing.JRadioButton
newImage
DOCUMENT ME!static int
NONNEGATIVE_GARROTE
DOCUMENT ME!static int
PWT
DOCUMENT ME!private javax.swing.JRadioButton
replaceImage
DOCUMENT ME!private ModelImage
resultImage
DOCUMENT ME!private javax.swing.JRadioButton
scad
DOCUMENT ME!static int
SCAD
DOCUMENT ME!private static long
serialVersionUID
Use serialVersionUID for interoperability.private javax.swing.JRadioButton
soft
DOCUMENT ME!static int
SOFT
DOCUMENT ME!private javax.swing.JTextField
textThreshold
DOCUMENT ME!private float
threshold
DOCUMENT ME!private int
thresholdType
DOCUMENT ME!private java.lang.String[]
titles
DOCUMENT ME!private ViewUserInterface
userInterface
DOCUMENT ME!private AlgorithmWaveletThreshold
waveletAlgo
DOCUMENT ME!private javax.swing.JCheckBox
waveletCheckBox
DOCUMENT ME!private ModelImage
waveletImage
DOCUMENT ME!-
Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager
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Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled
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Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
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Constructor Summary
Constructors Constructor Description JDialogWaveletThreshold()
Empty constructor needed for dynamic instantiation (used during scripting).JDialogWaveletThreshold(java.awt.Frame theParentFrame, ModelImage im)
Creates new dialog for entering parameters for wavelet threshold.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
actionPerformed(java.awt.event.ActionEvent event)
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.void
algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented.protected void
callAlgorithm()
Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.ParameterTable
createInputParameters()
Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()
).ParameterTable
createOutputParameters()
Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).protected void
doPostAlgorithmActions()
Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).ActionMetadata
getActionMetadata()
Return meta-information about this discoverable action for categorization and labeling purposes.java.lang.String
getOutputImageName(java.lang.String imageParamName)
Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).ModelImage
getResultImage()
Accessor that returns the image.private void
init()
Sets up the GUI (panels, buttons, etc) and displays it on the screen.boolean
isActionComplete()
Returns whether the action has successfully completed its execution.void
itemStateChanged(java.awt.event.ItemEvent event)
Method to handle item events.void
setCNum(int cNum)
Accessor that sets the number of terms.void
setDisplayLocNew()
Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.void
setDisplayLocReplace()
Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.void
setDoWaveletImage(boolean doWaveletImage)
Accessor that sets whether or not the wavelet image is displayed.protected void
setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.void
setThreshold(float threshold)
Accessor that sets the threshold.void
setThresholdType(int thresholdType)
Accessor that sets whether soft or hard thresholding is used.private boolean
setVariables()
Use the GUI results to set up the variables needed to run the algorithm.protected void
storeParamsFromGUI()
Record the parameters just used to run this algorithm in a script.-
Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete
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Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
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Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
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Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
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Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
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Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun
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Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface
insertScriptLine, scriptRun
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Field Detail
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serialVersionUID
private static final long serialVersionUID
Use serialVersionUID for interoperability.- See Also:
- Constant Field Values
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DAUB4
public static final int DAUB4
underlying wavelet filter For 4 coefficients the routine daub4 is considerably faster than pwt. DAUB4 implements a Daubechies 4-coefficient wavelet filter. PWT implements Daubechies filters with 4, 12, and 20 coefficients. DAUB4 and PWT use different default centerings. In spite of the faster speed of DAUB4, the dialog is designed only to call PWT so that that user only sees changes due to the number of coefficients and is not confused by changes in centering.- See Also:
- Constant Field Values
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PWT
public static final int PWT
DOCUMENT ME!- See Also:
- Constant Field Values
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HARD
public static final int HARD
thresholding estimator.- See Also:
- Constant Field Values
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SOFT
public static final int SOFT
DOCUMENT ME!- See Also:
- Constant Field Values
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NONNEGATIVE_GARROTE
public static final int NONNEGATIVE_GARROTE
DOCUMENT ME!- See Also:
- Constant Field Values
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SCAD
public static final int SCAD
DOCUMENT ME!- See Also:
- Constant Field Values
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cNum
private int cNum
or if the source image is to be replaced.
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coefficientCombo
private javax.swing.JComboBox coefficientCombo
DOCUMENT ME!
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displayLoc
private int displayLoc
DOCUMENT ME!
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doWaveletImage
private boolean doWaveletImage
DOCUMENT ME!
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garrote
private javax.swing.JRadioButton garrote
DOCUMENT ME!
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hard
private javax.swing.JRadioButton hard
DOCUMENT ME!
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image
private ModelImage image
DOCUMENT ME!
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newImage
private javax.swing.JRadioButton newImage
DOCUMENT ME!
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replaceImage
private javax.swing.JRadioButton replaceImage
DOCUMENT ME!
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resultImage
private ModelImage resultImage
DOCUMENT ME!
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scad
private javax.swing.JRadioButton scad
DOCUMENT ME!
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soft
private javax.swing.JRadioButton soft
DOCUMENT ME!
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textThreshold
private javax.swing.JTextField textThreshold
DOCUMENT ME!
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threshold
private float threshold
DOCUMENT ME!
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thresholdType
private int thresholdType
DOCUMENT ME!
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titles
private java.lang.String[] titles
DOCUMENT ME!
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userInterface
private ViewUserInterface userInterface
DOCUMENT ME!
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waveletAlgo
private AlgorithmWaveletThreshold waveletAlgo
DOCUMENT ME!
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waveletCheckBox
private javax.swing.JCheckBox waveletCheckBox
DOCUMENT ME!
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waveletImage
private ModelImage waveletImage
DOCUMENT ME!
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Constructor Detail
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JDialogWaveletThreshold
public JDialogWaveletThreshold()
Empty constructor needed for dynamic instantiation (used during scripting).
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JDialogWaveletThreshold
public JDialogWaveletThreshold(java.awt.Frame theParentFrame, ModelImage im)
Creates new dialog for entering parameters for wavelet threshold.- Parameters:
theParentFrame
- Parent frameim
- Source image
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Method Detail
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actionPerformed
public void actionPerformed(java.awt.event.ActionEvent event)
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.- Specified by:
actionPerformed
in interfacejava.awt.event.ActionListener
- Overrides:
actionPerformed
in classJDialogBase
- Parameters:
event
- event that triggers function
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algorithmPerformed
public void algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.- Specified by:
algorithmPerformed
in interfaceAlgorithmInterface
- Parameters:
algorithm
- Algorithm that caused the event.
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getResultImage
public ModelImage getResultImage()
Accessor that returns the image.- Returns:
- the result image
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itemStateChanged
public void itemStateChanged(java.awt.event.ItemEvent event)
Method to handle item events.- Specified by:
itemStateChanged
in interfacejava.awt.event.ItemListener
- Overrides:
itemStateChanged
in classJDialogBase
- Parameters:
event
- event that cause the method to fire
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setCNum
public void setCNum(int cNum)
Accessor that sets the number of terms.- Parameters:
cNum
- DOCUMENT ME!
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setDisplayLocNew
public void setDisplayLocNew()
Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.
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setDisplayLocReplace
public void setDisplayLocReplace()
Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.
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setDoWaveletImage
public void setDoWaveletImage(boolean doWaveletImage)
Accessor that sets whether or not the wavelet image is displayed.- Parameters:
doWaveletImage
- DOCUMENT ME!
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setThreshold
public void setThreshold(float threshold)
Accessor that sets the threshold.- Parameters:
threshold
- DOCUMENT ME!
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setThresholdType
public void setThresholdType(int thresholdType)
Accessor that sets whether soft or hard thresholding is used.- Parameters:
thresholdType
- DOCUMENT ME!
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callAlgorithm
protected void callAlgorithm()
Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.- Specified by:
callAlgorithm
in classJDialogScriptableBase
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doPostAlgorithmActions
protected void doPostAlgorithmActions()
Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table). Defaults to no action, override to actually have it do something.- Overrides:
doPostAlgorithmActions
in classJDialogScriptableBase
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setGUIFromParams
protected void setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.- Specified by:
setGUIFromParams
in classJDialogScriptableBase
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storeParamsFromGUI
protected void storeParamsFromGUI() throws ParserException
Record the parameters just used to run this algorithm in a script.- Specified by:
storeParamsFromGUI
in classJDialogScriptableBase
- Throws:
ParserException
- If there is a problem creating/recording the new parameters.
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init
private void init()
Sets up the GUI (panels, buttons, etc) and displays it on the screen.
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setVariables
private boolean setVariables()
Use the GUI results to set up the variables needed to run the algorithm.- Returns:
true
if parameters set successfully,false
otherwise.
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getActionMetadata
public ActionMetadata getActionMetadata()
Return meta-information about this discoverable action for categorization and labeling purposes.- Specified by:
getActionMetadata
in interfaceActionDiscovery
- Returns:
- Metadata for this action.
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createInputParameters
public ParameterTable createInputParameters()
Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()
).- Specified by:
createInputParameters
in interfaceActionDiscovery
- Returns:
- A parameter table listing the inputs of this algorithm.
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createOutputParameters
public ParameterTable createOutputParameters()
Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).- Specified by:
createOutputParameters
in interfaceActionDiscovery
- Returns:
- A parameter table listing the outputs of this algorithm.
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getOutputImageName
public java.lang.String getOutputImageName(java.lang.String imageParamName)
Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).- Specified by:
getOutputImageName
in interfaceActionDiscovery
- Parameters:
imageParamName
- The output image parameter label for which to get the image name.- Returns:
- The image name of the requested output image parameter label.
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isActionComplete
public boolean isActionComplete()
Returns whether the action has successfully completed its execution.- Specified by:
isActionComplete
in interfaceActionDiscovery
- Returns:
- True, if the action is complete. False, if the action failed or is still running.
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