Package gov.nih.mipav.view.renderer.WildMagic.AAM

Class CAAMAnalyzeSynthesizeSoftware

java.lang.Object
gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
public class CAAMAnalyzeSynthesizeSoftware extends CAAMAnalyzeSynthesize
This is the Java modified version of C++ active appearance model API (AAM_API). It is modified with a subset of required functions for automatic MRI prostate segmentation. AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education. Please see the full disclaimer below. All publications describing work using this software should cite the reference given below. Copyright (c) 2000-2003 Mikkel B. Stegmann, mbs@imm.dtu.dk IMM, Informatics invalid input: '&' Mathematical Modelling DTU, Technical University of Denmark Richard Petersens Plads, Building 321 DK-2800 Lyngby, Denmark http://www.imm.dtu.dk/~aam/ REFERENCES Please use the reference below, when writing articles, reports etc. where the AAM-API has been used. A draft version the article is available from the homepage. I will be happy to receive pre- or reprints of such articles. /Mikkel ------------- M. B. Stegmann, B. K. Ersboll, R. Larsen, "FAME -- A Flexible Appearance Modelling Environment", IEEE Transactions on Medical Imaging, IEEE, 2003 (to appear) ------------- 3RD PART SOFTWARE The software is partly based on the following libraries: - The Microsoft(tm) Vision Software Developers Kit, VisSDK - LAPACK DISCLAIMER This software is provided 'as-is', without any express or implied warranty. In no event will the author be held liable for any damages arising from the use of this software. Permission is granted to anyone to use this software for any non-commercial purpose, and to alter it, subject to the following restrictions: 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution. -- No guarantees of performance accompany this software, nor is any responsibility assumed on the part of the author or IMM. This software is provided by Mikkel B. Stegmann and IMM ``as is'' and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall IMM or Mikkel B. Stegmann be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of this software, even if advised of the possibility of such damage. $Revision: 1.4 $ $Date: 2003/04/23 14:49:15 $ Concrete class for software implementation of the analysis/synthesis functions.
Author:
Ruida Cheng

  • Field Details

  • Constructor Details

    • CAAMAnalyzeSynthesizeSoftware

      public CAAMAnalyzeSynthesizeSoftware(CAAMReferenceFrame rf)
      Constructor
      Parameters:
      rf - The reference frame to analyze and synthesize.

  • Method Details

    • dispose

      public void dispose()
      Dispose memory
      Specified by:
      dispose in class CAAMAnalyzeSynthesize

    • BuildWarpTable

      public void BuildWarpTable()
      Cache method, that caches triangle info. This method cache triangle information that does not change.

    • SetAnalyzeImage

      public void SetAnalyzeImage(ModelSimpleImage img)
      Sets the image to be analyzed.
      Specified by:
      SetAnalyzeImage in class CAAMAnalyzeSynthesize
      Parameters:
      img - Image to be analyzed.

    • Analyze

      public boolean Analyze(CAAMShape shape, CDVector texture)
      Warpper to analyze the image. Sample image texture under a given shape.
      Parameters:
      shape - VOI shape
      texture - image texture
      Returns:
      true if the shape is inside the image

    • Analyze

      public boolean Analyze(CAAMShape shape, ModelSimpleImage refImg)
      Warpper to analyze the image. Sample image texture under a given shape.
      Parameters:
      shape - VOI shape
      texture - image texture with MIPAV simple image type
      Returns:
      true if the shape is inside the image

    • Analyze

      public boolean Analyze(CAAMShape shape, CDVector texture, boolean useInterpolation)
      This method samples the image intensities under a user-supplied shape into a texture vector.
      Specified by:
      Analyze in class CAAMAnalyzeSynthesize
      Parameters:
      shape - VOI shape
      texture - image texture
      useInterpolation - If true bilinear interpolation is used (default). Otherwise the faster nearest neighbor interpolation is used.
      Returns:
      true if the shape is inside the image

    • Analyze

      public boolean Analyze(CAAMShape shape, ModelSimpleImage refImg, boolean useInterpolation)
      This method samples the image intensities under a user-supplied shape into a texture vector.
      Specified by:
      Analyze in class CAAMAnalyzeSynthesize
      Parameters:
      shape - VOI shape
      refImg - image reference, MIPAV simple image type
      useInterpolation - If true bilinear interpolation is used (default). Otherwise the faster nearest neighbor interpolation is used.
      texture - image texture with MIPAV simple image type
      Returns:
      true if the shape is inside the image

    • Synthesize

      public final boolean Synthesize(CAAMShape shape, CDVector texture, ModelSimpleImage destImage, boolean renderOntoImage)
      Renders a texture vector into a shape. This method renders a texture vector into a shape defined in image coordinates.
      Specified by:
      Synthesize in class CAAMAnalyzeSynthesize
      Parameters:
      shape - The shape to synthesize into.
      texture - The input image texture.
      destImage - Destination image
      renderOntoImage - If true the synthesization is done on top of the existing image.
      Returns:
      True on success.

    • Clone

      public CAAMAnalyzeSynthesize Clone(CAAMReferenceFrame rf)
      Clones itself.
      Specified by:
      Clone in class CAAMAnalyzeSynthesize
      Parameters:
      rf - The reference frame of the cloned object.
      Returns:
      A cloned object created on the heap.