Package gov.nih.mipav.model.algorithms
Class AlgorithmCostFunctions2D
- java.lang.Object
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- gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
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- All Implemented Interfaces:
AlgorithmOptimizeFunctionBase
public class AlgorithmCostFunctions2D extends java.lang.Object implements AlgorithmOptimizeFunctionBase
CostFunction - class for specifying optimization function.
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Field Summary
Fields Modifier and Type Field Description static int
CORRELATION_RATIO
DOCUMENT ME!static int
CORRELATION_RATIO_SMOOTHED
DOCUMENT ME!static int
CORRELATION_RATIO_SMOOTHED_WGT
DOCUMENT ME!private int
costCalled
DOCUMENT ME!private int
costFunctID
DOCUMENT ME!private ModelSimpleImage
inputImage
DOCUMENT ME!private ModelSimpleImage
inputWgtImage
DOCUMENT ME!static int
LEAST_SQUARES
DOCUMENT ME!static int
LEAST_SQUARES_COLOR
DOCUMENT ME!static int
LEAST_SQUARES_SMOOTHED
DOCUMENT ME!static int
LEAST_SQUARES_SMOOTHED_COLOR
DOCUMENT ME!static int
LEAST_SQUARES_SMOOTHED_WGT
DOCUMENT ME!static int
LEAST_SQUARES_SMOOTHED_WGT_COLOR
DOCUMENT ME!private ImageRegistrationGPU
m_kGPUCost
static int
MUTUAL_INFORMATION
DOCUMENT ME!static int
MUTUAL_INFORMATION_SMOOTHED
DOCUMENT ME!static int
MUTUAL_INFORMATION_SMOOTHED_WGT
DOCUMENT ME!private int
nBins
DOCUMENT ME!static int
NORMALIZED_MUTUAL_INFORMATION
DOCUMENT ME!static int
NORMALIZED_MUTUAL_INFORMATION_GPU
static int
NORMALIZED_MUTUAL_INFORMATION_GPU_LM
static int
NORMALIZED_MUTUAL_INFORMATION_SMOOTHED
DOCUMENT ME!static int
NORMALIZED_MUTUAL_INFORMATION_SMOOTHED_WGT
DOCUMENT ME!static int
NORMALIZED_XCORRELATION
DOCUMENT ME!static int
NORMALIZED_XCORRELATION_SINC
DOCUMENT ME!static int
NORMALIZED_XCORRELATION_SMOOTHED
DOCUMENT ME!static int
NORMALIZED_XCORRELATION_SMOOTHED_WGT
DOCUMENT ME!private double[]
pLogP
DOCUMENT ME!private ModelSimpleImage
refImage
DOCUMENT ME!private ModelSimpleImage
refWgtImage
DOCUMENT ME!private float
smoothSize
DOCUMENT ME!private int
xDim
DOCUMENT ME!private int
xEnd
DOCUMENT ME!private double
xEnd2
DOCUMENT ME!private int
xStart
private int
yDim
DOCUMENT ME!private int
yEnd
DOCUMENT ME!private double
yEnd2
DOCUMENT ME!private int
yStart
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Constructor Summary
Constructors Constructor Description AlgorithmCostFunctions2D(ModelSimpleImage rImage, ModelSimpleImage iImage, int functionID, int nBins, float smoothSize)
AlgorithmCostFunctions2D(ModelSimpleImage rImage, ModelSimpleImage iImage, int functionID, int nBins, float smoothSize, boolean calcMinMax)
Creates a new AlgorithmCostFunctions2D object.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description private void
calcEntropy(TransMatrixd tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!private void
calcEntropy(TransMatrix tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!private void
calcEntropySmoothed(TransMatrixd tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!private void
calcEntropySmoothed(TransMatrix tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!private void
calcEntropySmoothedWgt(TransMatrixd tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!private void
calcEntropySmoothedWgt(TransMatrix tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!private double
correlationRatio(TransMatrix tMatrix)
Correlation ratio cost function.private double
correlationRatio(TransMatrixd tMatrix)
Correlation ratio cost function.private double
correlationRatioSmoothed(TransMatrix tMatrix)
Correlation ratio cost function.private double
correlationRatioSmoothed(TransMatrixd tMatrix)
Correlation ratio cost function.private double
correlationRatioSmoothedWgt(TransMatrix tMatrix)
Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.private double
correlationRatioSmoothedWgt(TransMatrixd tMatrix)
Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.double
cost(double[] data)
Not implemented in this class.double
cost(TransMatrix affMatrix)
Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.double
cost(TransMatrixd affMatrix)
Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.void
disposeLocal()
Sets class global array variables to null and calls the garbage collector.void
finalize()
Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.private void
findRangeX(java.awt.Point minMaxPt, double newPtX, double newPtY, double aT00, double aT10, double iT00, double iT10)
DOCUMENT ME!int
getCostCalled()
Accessor that returns how many times the cost function has been called.int
getCostFunction()
boolean
isGPULineMin()
private double
leastSquares(TransMatrix tMatrix)
Least squares cost function.private double
leastSquares(TransMatrixd tMatrix)
Least squares cost function.private double
leastSquaresColor(TransMatrix tMatrix)
Least squares cost function.private double
leastSquaresColor(TransMatrixd tMatrix)
Least squares cost function.private double
leastSquaresSmoothed(TransMatrix tMatrix)
Least squares cost function.private double
leastSquaresSmoothed(TransMatrixd tMatrix)
Least squares cost function.private double
leastSquaresSmoothedColor(TransMatrix tMatrix)
Least squares cost function.private double
leastSquaresSmoothedColor(TransMatrixd tMatrix)
Least squares cost function.private double
leastSquaresSmoothedWgt(TransMatrix tMatrix)
Least squares cost function with weighting.private double
leastSquaresSmoothedWgt(TransMatrixd tMatrix)
Least squares cost function with weighting.private double
leastSquaresSmoothedWgtColor(TransMatrix tMatrix)
Least squares cost function with weighting.private double
leastSquaresSmoothedWgtColor(TransMatrixd tMatrix)
Least squares cost function with weighting.float[]
lineMin(WildMagic.LibFoundation.Mathematics.Matrix4f kToOrigin, WildMagic.LibFoundation.Mathematics.Matrix4f kFromOrigin, float rigid, float dim, double[] startPoint, double[] pt, int ptLength, double[] unitDirections, double unit_tolerance, double fMinDist, double bracketA, double functionA, double bracketB, double functionB, double bracketC, double functionC)
private double
mutualInformation(TransMatrix tMatrix)
DOCUMENT ME!private double
mutualInformation(TransMatrixd tMatrix)
DOCUMENT ME!private double
mutualInformationSmoothed(TransMatrix tMatrix)
DOCUMENT ME!private double
mutualInformationSmoothed(TransMatrixd tMatrix)
DOCUMENT ME!private double
normalizedMutualInformation(TransMatrix tMatrix)
DOCUMENT ME!private double
normalizedMutualInformation(TransMatrixd tMatrix)
DOCUMENT ME!private double
normalizedMutualInformationSmoothed(TransMatrix tMatrix)
DOCUMENT ME!private double
normalizedMutualInformationSmoothed(TransMatrixd tMatrix)
DOCUMENT ME!private double
normalizedMutualInformationSmoothedWgt(TransMatrix tMatrix)
DOCUMENT ME!private double
normalizedMutualInformationSmoothedWgt(TransMatrixd tMatrix)
DOCUMENT ME!private double
normalizedXCorrelation(TransMatrix tMatrix)
Normalized cross-correlation cost function.private double
normalizedXCorrelation(TransMatrixd tMatrix)
Normalized cross-correlation cost function.private double
normalizedXCorrelationSmoothed(TransMatrix tMatrix)
Normalized cross-correlation cost function.private double
normalizedXCorrelationSmoothed(TransMatrixd tMatrix)
Normalized cross-correlation cost function.private double
normalizedXCorrelationSmoothedWgt(TransMatrix tMatrix)
Normalized cross-correlation cost function with weighting.private double
normalizedXCorrelationSmoothedWgt(TransMatrixd tMatrix)
Normalized cross-correlation cost function with weighting.void
setGPUCost(ImageRegistrationGPU kGPUCost)
void
setInputWgtImage(ModelSimpleImage inputWgtImg)
Sets the input weight image.private void
setPLogP(int nBins)
Precalculates information and allocates buffers used in the calculation of mutual information statistics.void
setRefWgtImage(ModelSimpleImage refWgtImg)
Sets the reference weight image.
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Field Detail
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CORRELATION_RATIO_SMOOTHED_WGT
public static final int CORRELATION_RATIO_SMOOTHED_WGT
DOCUMENT ME!- See Also:
- Constant Field Values
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CORRELATION_RATIO_SMOOTHED
public static final int CORRELATION_RATIO_SMOOTHED
DOCUMENT ME!- See Also:
- Constant Field Values
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CORRELATION_RATIO
public static final int CORRELATION_RATIO
DOCUMENT ME!- See Also:
- Constant Field Values
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LEAST_SQUARES_SMOOTHED_WGT
public static final int LEAST_SQUARES_SMOOTHED_WGT
DOCUMENT ME!- See Also:
- Constant Field Values
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LEAST_SQUARES_SMOOTHED
public static final int LEAST_SQUARES_SMOOTHED
DOCUMENT ME!- See Also:
- Constant Field Values
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LEAST_SQUARES
public static final int LEAST_SQUARES
DOCUMENT ME!- See Also:
- Constant Field Values
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MUTUAL_INFORMATION_SMOOTHED_WGT
public static final int MUTUAL_INFORMATION_SMOOTHED_WGT
DOCUMENT ME!- See Also:
- Constant Field Values
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MUTUAL_INFORMATION_SMOOTHED
public static final int MUTUAL_INFORMATION_SMOOTHED
DOCUMENT ME!- See Also:
- Constant Field Values
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MUTUAL_INFORMATION
public static final int MUTUAL_INFORMATION
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_MUTUAL_INFORMATION_SMOOTHED_WGT
public static final int NORMALIZED_MUTUAL_INFORMATION_SMOOTHED_WGT
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_MUTUAL_INFORMATION_SMOOTHED
public static final int NORMALIZED_MUTUAL_INFORMATION_SMOOTHED
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_MUTUAL_INFORMATION
public static final int NORMALIZED_MUTUAL_INFORMATION
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_XCORRELATION_SMOOTHED_WGT
public static final int NORMALIZED_XCORRELATION_SMOOTHED_WGT
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_XCORRELATION_SINC
public static final int NORMALIZED_XCORRELATION_SINC
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_XCORRELATION_SMOOTHED
public static final int NORMALIZED_XCORRELATION_SMOOTHED
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_XCORRELATION
public static final int NORMALIZED_XCORRELATION
DOCUMENT ME!- See Also:
- Constant Field Values
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LEAST_SQUARES_SMOOTHED_WGT_COLOR
public static final int LEAST_SQUARES_SMOOTHED_WGT_COLOR
DOCUMENT ME!- See Also:
- Constant Field Values
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LEAST_SQUARES_SMOOTHED_COLOR
public static final int LEAST_SQUARES_SMOOTHED_COLOR
DOCUMENT ME!- See Also:
- Constant Field Values
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LEAST_SQUARES_COLOR
public static final int LEAST_SQUARES_COLOR
DOCUMENT ME!- See Also:
- Constant Field Values
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NORMALIZED_MUTUAL_INFORMATION_GPU
public static final int NORMALIZED_MUTUAL_INFORMATION_GPU
- See Also:
- Constant Field Values
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NORMALIZED_MUTUAL_INFORMATION_GPU_LM
public static final int NORMALIZED_MUTUAL_INFORMATION_GPU_LM
- See Also:
- Constant Field Values
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costCalled
private int costCalled
DOCUMENT ME!
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costFunctID
private int costFunctID
DOCUMENT ME!
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inputImage
private ModelSimpleImage inputImage
DOCUMENT ME!
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inputWgtImage
private ModelSimpleImage inputWgtImage
DOCUMENT ME!
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nBins
private int nBins
DOCUMENT ME!
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pLogP
private double[] pLogP
DOCUMENT ME!
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refImage
private ModelSimpleImage refImage
DOCUMENT ME!
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refWgtImage
private ModelSimpleImage refWgtImage
DOCUMENT ME!
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smoothSize
private float smoothSize
DOCUMENT ME!
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xDim
private int xDim
DOCUMENT ME!
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xStart
private int xStart
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xEnd
private int xEnd
DOCUMENT ME!
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xEnd2
private double xEnd2
DOCUMENT ME!
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yDim
private int yDim
DOCUMENT ME!
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yStart
private int yStart
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yEnd
private int yEnd
DOCUMENT ME!
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yEnd2
private double yEnd2
DOCUMENT ME!
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m_kGPUCost
private ImageRegistrationGPU m_kGPUCost
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Constructor Detail
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AlgorithmCostFunctions2D
public AlgorithmCostFunctions2D(ModelSimpleImage rImage, ModelSimpleImage iImage, int functionID, int nBins, float smoothSize)
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AlgorithmCostFunctions2D
public AlgorithmCostFunctions2D(ModelSimpleImage rImage, ModelSimpleImage iImage, int functionID, int nBins, float smoothSize, boolean calcMinMax)
Creates a new AlgorithmCostFunctions2D object.- Parameters:
rImage
- DOCUMENT ME!iImage
- DOCUMENT ME!functionID
- DOCUMENT ME!nBins
- DOCUMENT ME!smoothSize
- DOCUMENT ME!
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Method Detail
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getCostFunction
public int getCostFunction()
- Specified by:
getCostFunction
in interfaceAlgorithmOptimizeFunctionBase
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cost
public double cost(double[] data)
Not implemented in this class.- Specified by:
cost
in interfaceAlgorithmOptimizeFunctionBase
- Parameters:
data
- Array of data.- Returns:
- Double.MAX_VALUE
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cost
public double cost(TransMatrix affMatrix)
Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.- Specified by:
cost
in interfaceAlgorithmOptimizeFunctionBase
- Parameters:
affMatrix
- Transformation matrix to test cost of.- Returns:
- Cost at a supplied transformation.
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cost
public double cost(TransMatrixd affMatrix)
Calculates the cost (dependent on the selected cost function) based on the reference image and the input image.- Specified by:
cost
in interfaceAlgorithmOptimizeFunctionBase
- Parameters:
affMatrix
- Transformation matrix to test cost of.- Returns:
- Cost at a supplied transformation.
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disposeLocal
public void disposeLocal()
Sets class global array variables to null and calls the garbage collector.
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finalize
public void finalize() throws java.lang.Throwable
Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.- Overrides:
finalize
in classjava.lang.Object
- Throws:
java.lang.Throwable
- DOCUMENT ME!
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setGPUCost
public void setGPUCost(ImageRegistrationGPU kGPUCost)
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isGPULineMin
public boolean isGPULineMin()
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lineMin
public float[] lineMin(WildMagic.LibFoundation.Mathematics.Matrix4f kToOrigin, WildMagic.LibFoundation.Mathematics.Matrix4f kFromOrigin, float rigid, float dim, double[] startPoint, double[] pt, int ptLength, double[] unitDirections, double unit_tolerance, double fMinDist, double bracketA, double functionA, double bracketB, double functionB, double bracketC, double functionC)
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getCostCalled
public int getCostCalled()
Accessor that returns how many times the cost function has been called.- Returns:
- The number of times the cost function has been called.
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setInputWgtImage
public void setInputWgtImage(ModelSimpleImage inputWgtImg)
Sets the input weight image. If the weight values are outside the range [0:1] then the weigthts will be remapped to be between 0:1.- Parameters:
inputWgtImg
- the input weight image
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setRefWgtImage
public void setRefWgtImage(ModelSimpleImage refWgtImg)
Sets the reference weight image. If the weight values are outside the range [0:1] then the weigthts will be remapped to be between 0:1.- Parameters:
refWgtImg
- the reference weight image
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calcEntropy
private void calcEntropy(TransMatrix tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!jointEntropy
- DOCUMENT ME!margEntropyR
- DOCUMENT ME!margEntropyI
- DOCUMENT ME!
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calcEntropy
private void calcEntropy(TransMatrixd tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!jointEntropy
- DOCUMENT ME!margEntropyR
- DOCUMENT ME!margEntropyI
- DOCUMENT ME!
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calcEntropySmoothed
private void calcEntropySmoothed(TransMatrix tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!jointEntropy
- DOCUMENT ME!margEntropyR
- DOCUMENT ME!margEntropyI
- DOCUMENT ME!
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calcEntropySmoothed
private void calcEntropySmoothed(TransMatrixd tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!jointEntropy
- DOCUMENT ME!margEntropyR
- DOCUMENT ME!margEntropyI
- DOCUMENT ME!
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calcEntropySmoothedWgt
private void calcEntropySmoothedWgt(TransMatrix tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!jointEntropy
- DOCUMENT ME!margEntropyR
- DOCUMENT ME!margEntropyI
- DOCUMENT ME!
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calcEntropySmoothedWgt
private void calcEntropySmoothedWgt(TransMatrixd tMatrix, double[] jointEntropy, double[] margEntropyR, double[] margEntropyI)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!jointEntropy
- DOCUMENT ME!margEntropyR
- DOCUMENT ME!margEntropyI
- DOCUMENT ME!
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correlationRatio
private double correlationRatio(TransMatrix tMatrix)
Correlation ratio cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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correlationRatio
private double correlationRatio(TransMatrixd tMatrix)
Correlation ratio cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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correlationRatioSmoothed
private double correlationRatioSmoothed(TransMatrix tMatrix)
Correlation ratio cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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correlationRatioSmoothed
private double correlationRatioSmoothed(TransMatrixd tMatrix)
Correlation ratio cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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correlationRatioSmoothedWgt
private double correlationRatioSmoothedWgt(TransMatrix tMatrix)
Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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correlationRatioSmoothedWgt
private double correlationRatioSmoothedWgt(TransMatrixd tMatrix)
Correlation ratio cost function using weighting functions to mask out areas that should not be included in the cost function calculations.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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findRangeX
private void findRangeX(java.awt.Point minMaxPt, double newPtX, double newPtY, double aT00, double aT10, double iT00, double iT10)
DOCUMENT ME!- Parameters:
minMaxPt
- DOCUMENT ME!
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leastSquares
private double leastSquares(TransMatrix tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquares
private double leastSquares(TransMatrixd tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresColor
private double leastSquaresColor(TransMatrix tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresColor
private double leastSquaresColor(TransMatrixd tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothed
private double leastSquaresSmoothed(TransMatrix tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothed
private double leastSquaresSmoothed(TransMatrixd tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothedColor
private double leastSquaresSmoothedColor(TransMatrix tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothedColor
private double leastSquaresSmoothedColor(TransMatrixd tMatrix)
Least squares cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothedWgt
private double leastSquaresSmoothedWgt(TransMatrix tMatrix)
Least squares cost function with weighting.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothedWgt
private double leastSquaresSmoothedWgt(TransMatrixd tMatrix)
Least squares cost function with weighting.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothedWgtColor
private double leastSquaresSmoothedWgtColor(TransMatrix tMatrix)
Least squares cost function with weighting.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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leastSquaresSmoothedWgtColor
private double leastSquaresSmoothedWgtColor(TransMatrixd tMatrix)
Least squares cost function with weighting.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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mutualInformation
private double mutualInformation(TransMatrix tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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mutualInformation
private double mutualInformation(TransMatrixd tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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mutualInformationSmoothed
private double mutualInformationSmoothed(TransMatrix tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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mutualInformationSmoothed
private double mutualInformationSmoothed(TransMatrixd tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedMutualInformation
private double normalizedMutualInformation(TransMatrix tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedMutualInformation
private double normalizedMutualInformation(TransMatrixd tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedMutualInformationSmoothed
private double normalizedMutualInformationSmoothed(TransMatrix tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedMutualInformationSmoothed
private double normalizedMutualInformationSmoothed(TransMatrixd tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedMutualInformationSmoothedWgt
private double normalizedMutualInformationSmoothedWgt(TransMatrix tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedMutualInformationSmoothedWgt
private double normalizedMutualInformationSmoothedWgt(TransMatrixd tMatrix)
DOCUMENT ME!- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedXCorrelation
private double normalizedXCorrelation(TransMatrix tMatrix)
Normalized cross-correlation cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedXCorrelation
private double normalizedXCorrelation(TransMatrixd tMatrix)
Normalized cross-correlation cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedXCorrelationSmoothed
private double normalizedXCorrelationSmoothed(TransMatrix tMatrix)
Normalized cross-correlation cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedXCorrelationSmoothed
private double normalizedXCorrelationSmoothed(TransMatrixd tMatrix)
Normalized cross-correlation cost function.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedXCorrelationSmoothedWgt
private double normalizedXCorrelationSmoothedWgt(TransMatrix tMatrix)
Normalized cross-correlation cost function with weighting.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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normalizedXCorrelationSmoothedWgt
private double normalizedXCorrelationSmoothedWgt(TransMatrixd tMatrix)
Normalized cross-correlation cost function with weighting.- Parameters:
tMatrix
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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setPLogP
private void setPLogP(int nBins)
Precalculates information and allocates buffers used in the calculation of mutual information statistics.- Parameters:
nBins
- the number of bins
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