Package gov.nih.mipav.model.file

Class FileInfoMRC

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoMRC

All Implemented Interfaces:

Serializable, Cloneable

public class FileInfoMRC
extends FileInfoBase

This structures contains the information that describes how a MRC image is stored on disk.

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private float	alpha	DOCUMENT ME!
private float	beta	DOCUMENT ME!
private short	creatorID	DOCUMENT ME!
private float	gamma	DOCUMENT ME!
private short	idType	DOCUMENT ME!
private int	impliedFlagBytes	DOCUMENT ME!
private short	ispg	DOCUMENT ME!
private String[]	label	DOCUMENT ME!
private short	lens	DOCUMENT ME!
private int	mapC	DOCUMENT ME!
private int	mapR	DOCUMENT ME!
private int	mapS	DOCUMENT ME!
private short	nd1	DOCUMENT ME!
private short	nd2	DOCUMENT ME!
private int	next	DOCUMENT ME!
private short	nint	DOCUMENT ME!
private short	nreal	DOCUMENT ME!
private short	nSymbt	DOCUMENT ME!
private short	nwave	DOCUMENT ME!
private float	rms	DOCUMENT ME!
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private float[]	tiltAngles	DOCUMENT ME!
private short	vd1	DOCUMENT ME!
private short	vd2	DOCUMENT ME!
private short	wave1	DOCUMENT ME!
private short	wave2	DOCUMENT ME!
private short	wave3	DOCUMENT ME!
private short	wave4	DOCUMENT ME!
private short	wave5	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, dtiParams, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoMRC(String name, String directory, int format)	FileInfoMRC - file info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
void	setAlpha(float alpha)	DOCUMENT ME!
void	setBeta(float beta)	DOCUMENT ME!
void	setCreatorID(short creatorID)	DOCUMENT ME!
void	setGamma(float gamma)	DOCUMENT ME!
void	setIDType(short idType)	DOCUMENT ME!
void	setIspg(short ispg)	DOCUMENT ME!
void	setLabel(String[] label)	DOCUMENT ME!
void	setLens(short lens)	DOCUMENT ME!
void	setMapC(int mapC)	DOCUMENT ME!
void	setMapR(int mapR)	DOCUMENT ME!
void	setMapS(int mapS)	DOCUMENT ME!
void	setND1(short nd1)	DOCUMENT ME!
void	setND2(short nd2)	DOCUMENT ME!
void	setNext(int next)	DOCUMENT ME!
void	setNint(short nint)	DOCUMENT ME!
void	setNreal(short nreal)	DOCUMENT ME!
void	setNSymbt(short nSymbt)	DOCUMENT ME!
void	setNWave(short nwave)	DOCUMENT ME!
void	setRMS(float rms)	DOCUMENT ME!
void	setTiltAngles(float[] tiltAngles)	DOCUMENT ME!
void	setVD1(short vd1)	DOCUMENT ME!
void	setVD2(short vd2)	DOCUMENT ME!
void	setWave1(short wave1)	DOCUMENT ME!
void	setWave2(short wave2)	DOCUMENT ME!
void	setWave3(short wave3)	DOCUMENT ME!
void	setWave4(short wave4)	DOCUMENT ME!
void	setWave5(short wave5)	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getDTIParameters, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setDTIParameters, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

alpha

private float alpha

DOCUMENT ME!

beta

private float beta

DOCUMENT ME!

gamma

private float gamma

DOCUMENT ME!

creatorID

private short creatorID

DOCUMENT ME!

idType

private short idType

DOCUMENT ME!

impliedFlagBytes

private int impliedFlagBytes

DOCUMENT ME!

ispg

private short ispg

DOCUMENT ME!

nSymbt

private short nSymbt

DOCUMENT ME!

label

private String[] label

DOCUMENT ME!

lens

private short lens

DOCUMENT ME!

mapC

private int mapC

DOCUMENT ME!

mapR

private int mapR

DOCUMENT ME!

mapS

private int mapS

DOCUMENT ME!

nd1

private short nd1

DOCUMENT ME!

nd2

private short nd2

DOCUMENT ME!

vd1

private short vd1

DOCUMENT ME!

vd2

private short vd2

DOCUMENT ME!

next

private int next

DOCUMENT ME!

nint

private short nint

DOCUMENT ME!

nreal

private short nreal

DOCUMENT ME!

nwave

private short nwave

DOCUMENT ME!

rms

private float rms

DOCUMENT ME!

tiltAngles

private float[] tiltAngles

DOCUMENT ME!

wave1

private short wave1

DOCUMENT ME!

wave2

private short wave2

DOCUMENT ME!

wave3

private short wave3

DOCUMENT ME!

wave4

private short wave4

DOCUMENT ME!

wave5

private short wave5

DOCUMENT ME!

Constructor Details

FileInfoMRC

public FileInfoMRC(String name,
 String directory,
 int format)

FileInfoMRC - file info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Details

displayAboutInfo

public void displayAboutInfo(JDialogBase dlog,
 TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

setAlpha

public void setAlpha(float alpha)

DOCUMENT ME!

Parameters:

alpha - DOCUMENT ME!

setBeta

public void setBeta(float beta)

DOCUMENT ME!

Parameters:

beta - DOCUMENT ME!

setCreatorID

public void setCreatorID(short creatorID)

DOCUMENT ME!

Parameters:

creatorID - DOCUMENT ME!

setGamma

public void setGamma(float gamma)

DOCUMENT ME!

Parameters:

gamma - DOCUMENT ME!

setIDType

public void setIDType(short idType)

DOCUMENT ME!

Parameters:

idType - DOCUMENT ME!

setIspg

public void setIspg(short ispg)

DOCUMENT ME!

Parameters:

ispg - DOCUMENT ME!

setLabel

public void setLabel(String[] label)

DOCUMENT ME!

Parameters:

label - DOCUMENT ME!

setLens

public void setLens(short lens)

DOCUMENT ME!

Parameters:

lens - DOCUMENT ME!

setMapC

public void setMapC(int mapC)

DOCUMENT ME!

Parameters:

mapC - DOCUMENT ME!

setMapR

public void setMapR(int mapR)

DOCUMENT ME!

Parameters:

mapR - DOCUMENT ME!

setMapS

public void setMapS(int mapS)

DOCUMENT ME!

Parameters:

mapS - DOCUMENT ME!

setND1

public void setND1(short nd1)

DOCUMENT ME!

Parameters:

nd1 - DOCUMENT ME!

setND2

public void setND2(short nd2)

DOCUMENT ME!

Parameters:

nd2 - DOCUMENT ME!

setNext

public void setNext(int next)

DOCUMENT ME!

Parameters:

next - DOCUMENT ME!

setNint

public void setNint(short nint)

DOCUMENT ME!

Parameters:

nint - DOCUMENT ME!

setNreal

public void setNreal(short nreal)

DOCUMENT ME!

Parameters:

nreal - DOCUMENT ME!

setNSymbt

public void setNSymbt(short nSymbt)

DOCUMENT ME!

Parameters:

nSymbt - DOCUMENT ME!

setNWave

public void setNWave(short nwave)

DOCUMENT ME!

Parameters:

nwave - DOCUMENT ME!

setRMS

public void setRMS(float rms)

DOCUMENT ME!

Parameters:

rms - DOCUMENT ME!

setTiltAngles

public void setTiltAngles(float[] tiltAngles)

DOCUMENT ME!

Parameters:

tiltAngles - DOCUMENT ME!

setVD1

public void setVD1(short vd1)

DOCUMENT ME!

Parameters:

vd1 - DOCUMENT ME!

setVD2

public void setVD2(short vd2)

DOCUMENT ME!

Parameters:

vd2 - DOCUMENT ME!

setWave1

public void setWave1(short wave1)

DOCUMENT ME!

Parameters:

wave1 - DOCUMENT ME!

setWave2

public void setWave2(short wave2)

DOCUMENT ME!

Parameters:

wave2 - DOCUMENT ME!

setWave3

public void setWave3(short wave3)

DOCUMENT ME!

Parameters:

wave3 - DOCUMENT ME!

setWave4

public void setWave4(short wave4)

DOCUMENT ME!

Parameters:

wave4 - DOCUMENT ME!

setWave5

public void setWave5(short wave5)

DOCUMENT ME!

Parameters:

wave5 - DOCUMENT ME!