java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.DoublyConnectedSC

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class DoublyConnectedSC
extends AlgorithmBase
```

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private double[]`	`ALFA02`
`private double[]`	`ALFA12`
`private double[]`	`C2`
`private double`	`DLAM`
`private int`	`dscfun`
`private double[][]`	`FORWARD_POINTS`
`private int`	`ICOUNT`
`private int`	`IGUESS`
`private int[]`	`IND`
`private double[][]`	`INVERSE_POINTS`
`private int`	`IPOLY`
`private int`	`ISHAPE`
`private int`	`ISHAPE2`
`private int`	`ISOLV`
`private int`	`ISPRT`
`private int`	`IU`
`private int`	`LINEARC`
`private int`	`LINEARC2`
`private java.util.Vector<java.lang.Double>[][]`	`linhx`
`private java.util.Vector<java.lang.Double>[][]`	`linhy`
`private int[]`	`M`
`private int`	`M2`
`private double`	`MACHEP`
`private int[]`	`N`
`private int`	`N2`
`private int`	`NPTQ`
`private int`	`NPTQ2`
`private int`	`NSHAPE`
`private double[]`	`PHI02`
`private double[]`	`PHI12`
`private double[]`	`QWORK2`
`private SchwarzChristoffelMapping`	`scm`
`private boolean`	`testRoutine`
`private double`	`TOL`
`private double[]`	`U2`
`private double[]`	`UARY`
`private double[]`	`VARY`
`private double[][]`	`W02`
`private double[][]`	`W12`
`private double[][]`	`Z0`
`private double[][]`	`Z02`
`private double[][]`	`Z1`
`private double[][]`	`Z12`

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`DoublyConnectedSC()`
`DoublyConnectedSC(int IPOLY, int NPTQ, int ISOLV, int ISPRT)`
`DoublyConnectedSC(ModelImage destImg, ModelImage srcImg, double[][] Z0, double[][] Z1, int NPTQ, int ISPRT, int IGUESS, int LINEARC, double TOL)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`ANGLES(int MN, double[][] Z01, double[] ALFA01, int I01)`
`private double`	`ARGUM(double U1, double[] W01K)`
`private void`	`CHECK(double[] ALFA0, double[] ALFA1, int M, int N, int ISHAPE)`
`private void`	`CLASS(int N, double ALPHA, double BETA, double[] B, double[] A, double[] MUZERO)`
`private double`	`DGAMMA(double X)`
`private double`	`DIST(int M, int N, double[][] W0, double[][] W1, double[] W, int KWA, int IC)`
`private void`	`DOGLEG(int N, double[] R, int LR, double[] DIAG, double[] QTB, double DELTA, double[] X, double[] WA1, double[] WA2)`
`private void`	`DSCDATA(int IPOLY, int[] M, int[] N, double[][] Z0, double[][] Z1, double[] ALFA0, double[] ALFA1)`
`private void`	`DSCFUN(int NDIM, double[] X, double[] FVAL, int[] IFLAG)`
`private void`	`DSCPRINT(int M, int N, double[] C, double U, double[][] W0, double[][] W1, double[] PHI0, double[] PHI1, double TOL, int NPTQ)`
`private void`	`DSCSOLV(double TOL, int IGUESS, int M, int N, double[] U, double[] C, double[][] W0, double[][] W1, double[] PHI0, double[] PHI1, double[][] Z0, double[][] Z1, double[] ALFA0, double[] ALFA1, int NPTQ, double[] QWORK, int ISHAPE, int LINEARC)`
`private void`	`DSCTEST(int M, int N, double U, double[] C, double[][] W0, double[][] W1, double[][] Z0, double[][] Z1, double[] ALFA0, double[] ALFA1, int NPTQ, double[] QWORK)`
`private double`	`ENORM(int N, double[] X)`
`private void`	`FDJAC1(int FCN, int N, double[] X, double[] FVEC, double[][] FJAC, int LDFJAC, int[] IFLAG, int ML, int MU, double EPSFCN, double[] WA1, double[] WA2)`
`private double`	`FMAX(int MN, double[] FVAL)`
`private void`	`GAUSSJ(int N, double ALPHA, double BETA, double[] B, double[] T, double[] W)`
`private void`	`HYBRD(int FCN, int N, double[] X, double[] FVEC, double XTOL, int MAXFEV, int ML, int MU, double EPSFCN, double[] DIAG, int MODE, double FACTOR, int NPRINT, int[] INFO, int[] NFEV, double[][] FJAC, int LDFJAC, double[] R, int LR, double[] QTF, double[] WA1, double[] WA2, double[] WA3, double[] WA4)`
`private void`	`IMTQL2(int N, double[] D, double[] E, double[] Z, int[] IERR)`
`private void`	`NEARW(int M, int N, double[][] W0, double[][] W1, double[] ALFA0, double[] W, int[] KNEAR, int[] INEAR)`
`private void`	`NEARZ(int M, int N, double[][] Z0, double[][] Z1, double[] ALFA0, double[] Z, int[] KNZ, int[] INZ)`
`private void`	`plot(double U, double[] R, double[] theta, int num1draw, int num2draw, int yInvert, double[][] W0, double[][] W1, double[][] Z0, double[][] Z1, double[] ALFA0, double[] ALFA1, double[] QWORK, double[] C)`
`private void`	`QFORM(int M, int N, double[][] Q, int LDQ, double[] WA)`
`private void`	`QINIT(int M, int N, double[] ALFA0, double[] ALFA1, int NPTQ, double[] QWORK)`
`private void`	`QRFAC(int M, int N, double[][] A, int LDA, boolean PIVOT, int[] IPVT, int LIPVT, double[] RDIAG, double[] ACNORM, double[] WA)`
`private void`	`R1MPYQ(int M, int N, double[][] A, int LDA, double[] V, double[] W)`
`private void`	`R1UPDT(int M, int N, double[] S, int LS, double[] U, double[] V, double[] W, boolean[] SING)`
`void`	`runAlgorithm()`	Actually runs the algorithm.
`private void`	`THDATA(double[] U)`
`private double[]`	`WDSC(double[] ZZ, int M, int N, double U, double[] C, double[][] W0, double[][] W1, double[][] Z0, double[][] Z1, double[] ALFA0, double[] ALFA1, double[] PHI0, double[] PHI1, int NPTQ, double[] QWORK, double EPS, int IOPT)`
`private double[]`	`WPROD(double[] W, int M, int N, double U, double[][] W0, double[][] W1, double[] ALFA0, double[] ALFA1)`
`private double[]`	`WQSUM(double[] WA, double PHIA, int KWA, int IC, double[] WB, double PHIB, double RADIUS, int M, int N, double U, double[][] W0, double[][] W1, double[] ALFA0, double[] ALFA1, int NPTQ, double[] QWORK, int LINEARC)`
`private double[]`	`WQUAD(double[] WA, double PHIA, int KWA, int ICA, double[] WB, double PHIB, int KWB, int ICB, double RADIUS, int M, int N, double U, double[][] W0, double[][] W1, double[] ALFA0, double[] ALFA1, int NPTQ, double[] QWORK, int LINEARC, int IEVL)`
`private double[]`	`WQUAD1(double[] WA, double PHIA, int KWA, int IC, double[] WB, double PHIB, double RADIUS, int M, int N, double U, double[][] W0, double[][] W1, double[] ALFA0, double[] ALFA1, int NPTQ, double[] QWORK, int LINEARC)`
`private double[]`	`WTHETA(double U, double[] W)`
`private void`	`XWTRAN(int M, int N, double[] X, double[] U, double[] C, double[][] W0, double[][] W1, double[] PHI0, double[] PHI1)`
`private double[]`	`ZDSC(double[] WW, int KWW, int IC, int M, int N, double U, double[] C, double[][] W0, double[][] W1, double[][] Z0, double[][] Z1, double[] ALFA0, double[] ALFA1, double[] PHI0, double[] PHI1, int NPTQ, double[] QWORK, int IOPT)`

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

dscfun
```
private final int dscfun
```
See Also:

Constant Field Values

W02
```
private double[][] W02
```

W12
```
private double[][] W12
```

Z02
```
private double[][] Z02
```

Z12
```
private double[][] Z12
```

C2
```
private double[] C2
```

U2
```
private double[] U2
```

PHI02
```
private double[] PHI02
```

PHI12
```
private double[] PHI12
```

ALFA02
```
private double[] ALFA02
```

ALFA12
```
private double[] ALFA12
```

QWORK2
```
private double[] QWORK2
```

M2
```
private int M2
```

N2
```
private int N2
```

NPTQ2
```
private int NPTQ2
```

ISHAPE2
```
private int ISHAPE2
```

LINEARC2
```
private int LINEARC2
```

NSHAPE
```
private int NSHAPE
```

IND
```
private int[] IND
```

UARY
```
private double[] UARY
```

VARY
```
private double[] VARY
```

DLAM
```
private double DLAM
```

IU
```
private int IU
```

ISPRT
```
private int ISPRT
```

ICOUNT
```
private int ICOUNT
```

scm
```
private SchwarzChristoffelMapping scm
```

Z0
```
private double[][] Z0
```

Z1
```
private double[][] Z1
```

IPOLY
```
private int IPOLY
```

NPTQ
```
private int NPTQ
```

ISOLV
```
private int ISOLV
```

IGUESS
```
private int IGUESS
```

LINEARC
```
private int LINEARC
```

TOL
```
private double TOL
```

INVERSE_POINTS
```
private double[][] INVERSE_POINTS
```

FORWARD_POINTS
```
private double[][] FORWARD_POINTS
```

testRoutine
```
private boolean testRoutine
```

MACHEP
```
private double MACHEP
```

M
```
private int[] M
```

N
```
private int[] N
```

ISHAPE
```
private int ISHAPE
```

linhx

private java.util.Vector<java.lang.Double>[][] linhx

linhy

private java.util.Vector<java.lang.Double>[][] linhy

Constructor Detail

DoublyConnectedSC
```
public DoublyConnectedSC()
```

DoublyConnectedSC

public DoublyConnectedSC(int IPOLY,
                         int NPTQ,
                         int ISOLV,
                         int ISPRT)

DoublyConnectedSC

public DoublyConnectedSC(ModelImage destImg,
                         ModelImage srcImg,
                         double[][] Z0,
                         double[][] Z1,
                         int NPTQ,
                         int ISPRT,
                         int IGUESS,
                         int LINEARC,
                         double TOL)

Method Detail

runAlgorithm
```
public void runAlgorithm()
```
Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

plot

private void plot(double U,
                  double[] R,
                  double[] theta,
                  int num1draw,
                  int num2draw,
                  int yInvert,
                  double[][] W0,
                  double[][] W1,
                  double[][] Z0,
                  double[][] Z1,
                  double[] ALFA0,
                  double[] ALFA1,
                  double[] QWORK,
                  double[] C)

DSCDATA

private void DSCDATA(int IPOLY,
                     int[] M,
                     int[] N,
                     double[][] Z0,
                     double[][] Z1,
                     double[] ALFA0,
                     double[] ALFA1)

THDATA
```
private void THDATA(double[] U)
```

WTHETA

private double[] WTHETA(double U,
                        double[] W)

WPROD

private double[] WPROD(double[] W,
                       int M,
                       int N,
                       double U,
                       double[][] W0,
                       double[][] W1,
                       double[] ALFA0,
                       double[] ALFA1)

WQSUM

private double[] WQSUM(double[] WA,
                       double PHIA,
                       int KWA,
                       int IC,
                       double[] WB,
                       double PHIB,
                       double RADIUS,
                       int M,
                       int N,
                       double U,
                       double[][] W0,
                       double[][] W1,
                       double[] ALFA0,
                       double[] ALFA1,
                       int NPTQ,
                       double[] QWORK,
                       int LINEARC)

WQUAD1

private double[] WQUAD1(double[] WA,
                        double PHIA,
                        int KWA,
                        int IC,
                        double[] WB,
                        double PHIB,
                        double RADIUS,
                        int M,
                        int N,
                        double U,
                        double[][] W0,
                        double[][] W1,
                        double[] ALFA0,
                        double[] ALFA1,
                        int NPTQ,
                        double[] QWORK,
                        int LINEARC)

WQUAD

private double[] WQUAD(double[] WA,
                       double PHIA,
                       int KWA,
                       int ICA,
                       double[] WB,
                       double PHIB,
                       int KWB,
                       int ICB,
                       double RADIUS,
                       int M,
                       int N,
                       double U,
                       double[][] W0,
                       double[][] W1,
                       double[] ALFA0,
                       double[] ALFA1,
                       int NPTQ,
                       double[] QWORK,
                       int LINEARC,
                       int IEVL)

XWTRAN

private void XWTRAN(int M,
                    int N,
                    double[] X,
                    double[] U,
                    double[] C,
                    double[][] W0,
                    double[][] W1,
                    double[] PHI0,
                    double[] PHI1)

FMAX

private double FMAX(int MN,
                    double[] FVAL)

DSCFUN

private void DSCFUN(int NDIM,
                    double[] X,
                    double[] FVAL,
                    int[] IFLAG)

DSCSOLV

private void DSCSOLV(double TOL,
                     int IGUESS,
                     int M,
                     int N,
                     double[] U,
                     double[] C,
                     double[][] W0,
                     double[][] W1,
                     double[] PHI0,
                     double[] PHI1,
                     double[][] Z0,
                     double[][] Z1,
                     double[] ALFA0,
                     double[] ALFA1,
                     int NPTQ,
                     double[] QWORK,
                     int ISHAPE,
                     int LINEARC)

ZDSC

private double[] ZDSC(double[] WW,
                      int KWW,
                      int IC,
                      int M,
                      int N,
                      double U,
                      double[] C,
                      double[][] W0,
                      double[][] W1,
                      double[][] Z0,
                      double[][] Z1,
                      double[] ALFA0,
                      double[] ALFA1,
                      double[] PHI0,
                      double[] PHI1,
                      int NPTQ,
                      double[] QWORK,
                      int IOPT)

WDSC

private double[] WDSC(double[] ZZ,
                      int M,
                      int N,
                      double U,
                      double[] C,
                      double[][] W0,
                      double[][] W1,
                      double[][] Z0,
                      double[][] Z1,
                      double[] ALFA0,
                      double[] ALFA1,
                      double[] PHI0,
                      double[] PHI1,
                      int NPTQ,
                      double[] QWORK,
                      double EPS,
                      int IOPT)

ANGLES

private void ANGLES(int MN,
                    double[][] Z01,
                    double[] ALFA01,
                    int I01)

ARGUM

private double ARGUM(double U1,
                     double[] W01K)

NEARW

private void NEARW(int M,
                   int N,
                   double[][] W0,
                   double[][] W1,
                   double[] ALFA0,
                   double[] W,
                   int[] KNEAR,
                   int[] INEAR)

NEARZ

private void NEARZ(int M,
                   int N,
                   double[][] Z0,
                   double[][] Z1,
                   double[] ALFA0,
                   double[] Z,
                   int[] KNZ,
                   int[] INZ)

DIST

private double DIST(int M,
                    int N,
                    double[][] W0,
                    double[][] W1,
                    double[] W,
                    int KWA,
                    int IC)

CHECK

private void CHECK(double[] ALFA0,
                   double[] ALFA1,
                   int M,
                   int N,
                   int ISHAPE)

DSCPRINT

private void DSCPRINT(int M,
                      int N,
                      double[] C,
                      double U,
                      double[][] W0,
                      double[][] W1,
                      double[] PHI0,
                      double[] PHI1,
                      double TOL,
                      int NPTQ)

DSCTEST

private void DSCTEST(int M,
                     int N,
                     double U,
                     double[] C,
                     double[][] W0,
                     double[][] W1,
                     double[][] Z0,
                     double[][] Z1,
                     double[] ALFA0,
                     double[] ALFA1,
                     int NPTQ,
                     double[] QWORK)

HYBRD

private void HYBRD(int FCN,
                   int N,
                   double[] X,
                   double[] FVEC,
                   double XTOL,
                   int MAXFEV,
                   int ML,
                   int MU,
                   double EPSFCN,
                   double[] DIAG,
                   int MODE,
                   double FACTOR,
                   int NPRINT,
                   int[] INFO,
                   int[] NFEV,
                   double[][] FJAC,
                   int LDFJAC,
                   double[] R,
                   int LR,
                   double[] QTF,
                   double[] WA1,
                   double[] WA2,
                   double[] WA3,
                   double[] WA4)

DOGLEG

private void DOGLEG(int N,
                    double[] R,
                    int LR,
                    double[] DIAG,
                    double[] QTB,
                    double DELTA,
                    double[] X,
                    double[] WA1,
                    double[] WA2)

QINIT

private void QINIT(int M,
                   int N,
                   double[] ALFA0,
                   double[] ALFA1,
                   int NPTQ,
                   double[] QWORK)

R1MPYQ

private void R1MPYQ(int M,
                    int N,
                    double[][] A,
                    int LDA,
                    double[] V,
                    double[] W)

R1UPDT

private void R1UPDT(int M,
                    int N,
                    double[] S,
                    int LS,
                    double[] U,
                    double[] V,
                    double[] W,
                    boolean[] SING)

GAUSSJ

private void GAUSSJ(int N,
                    double ALPHA,
                    double BETA,
                    double[] B,
                    double[] T,
                    double[] W)

CLASS

private void CLASS(int N,
                   double ALPHA,
                   double BETA,
                   double[] B,
                   double[] A,
                   double[] MUZERO)

IMTQL2

private void IMTQL2(int N,
                    double[] D,
                    double[] E,
                    double[] Z,
                    int[] IERR)

DGAMMA
```
private double DGAMMA(double X)
```

ENORM

private double ENORM(int N,
                     double[] X)

FDJAC1

private void FDJAC1(int FCN,
                    int N,
                    double[] X,
                    double[] FVEC,
                    double[][] FJAC,
                    int LDFJAC,
                    int[] IFLAG,
                    int ML,
                    int MU,
                    double EPSFCN,
                    double[] WA1,
                    double[] WA2)

QFORM

private void QFORM(int M,
                   int N,
                   double[][] Q,
                   int LDQ,
                   double[] WA)

QRFAC

private void QRFAC(int M,
                   int N,
                   double[][] A,
                   int LDA,
                   boolean PIVOT,
                   int[] IPVT,
                   int LIPVT,
                   double[] RDIAG,
                   double[] ACNORM,
                   double[] WA)

Class DoublyConnectedSC

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

dscfun

W02

W12

Z02

Z12

C2

U2

PHI02

PHI12

ALFA02

ALFA12

QWORK2

M2

N2

NPTQ2

ISHAPE2

LINEARC2

NSHAPE

IND

UARY

VARY

DLAM

IU

ISPRT

ICOUNT

scm

Z0

Z1

IPOLY

NPTQ

ISOLV

IGUESS

LINEARC

TOL

INVERSE_POINTS

FORWARD_POINTS

testRoutine

MACHEP

M

N

ISHAPE

linhx

linhy

Constructor Detail

DoublyConnectedSC

DoublyConnectedSC

DoublyConnectedSC

Method Detail

runAlgorithm

plot

DSCDATA

THDATA

WTHETA

WPROD

WQSUM

WQUAD1

WQUAD

XWTRAN

FMAX

DSCFUN

DSCSOLV

ZDSC

WDSC

ANGLES

ARGUM

NEARW

NEARZ

DIST