Package gov.nih.mipav.view.dialogs
Class JDialogHurstIndex
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- java.awt.Window
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- java.awt.Dialog
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- javax.swing.JDialog
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- gov.nih.mipav.view.dialogs.JDialogBase
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- gov.nih.mipav.view.dialogs.JDialogScriptableBase
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- gov.nih.mipav.view.dialogs.JDialogHurstIndex
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- All Implemented Interfaces:
AlgorithmInterface
,ScriptableActionInterface
,DialogDefaultsInterface
,java.awt.event.ActionListener
,java.awt.event.FocusListener
,java.awt.event.ItemListener
,java.awt.event.WindowListener
,java.awt.image.ImageObserver
,java.awt.MenuContainer
,java.io.Serializable
,java.util.EventListener
,javax.accessibility.Accessible
,javax.swing.RootPaneContainer
,javax.swing.WindowConstants
public class JDialogHurstIndex extends JDialogScriptableBase implements AlgorithmInterface, ScriptableActionInterface
Dialog to get user input, then call the algorithm.- Version:
- 0.1 June 25, 2012
- Author:
- William Gandler
- See Also:
AlgorithmHurstIndex
, Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
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Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog
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Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
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Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
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Field Summary
Fields Modifier and Type Field Description private static int
BLUE_OFFSET
Blue channel.private javax.swing.JRadioButton
blueButton
DOCUMENT ME!private javax.swing.ButtonGroup
colorGroup
DOCUMENT ME!private javax.swing.JPanel
colorPanel
DOCUMENT ME!private javax.swing.JPanel
distancePanel
DOCUMENT ME!private static int
GREEN_OFFSET
Green channel.private javax.swing.JRadioButton
greenButton
DOCUMENT ME!private int
grouping
private AlgorithmHurstIndex
hurstAlgo
DOCUMENT ME!private ModelImage
image
DOCUMENT ME!private boolean
integerDistanceRound
If true, take rounding of Euclidean distance as distance If false, take Euclidean distance as distanceprivate javax.swing.JCheckBox
integerDistanceRoundCheckBox
private javax.swing.JLabel
labelDimensionality
private javax.swing.JLabel
labelMaxDistance
private javax.swing.JLabel
labelMinDistance
private double
maxDistance
private double
minDistance
private static int
PIXEL_GROUPING
private javax.swing.JRadioButton
pixelButton
private javax.swing.ButtonGroup
pixelOrVOIGroup
private static int
RED_OFFSET
Red channel.private javax.swing.JRadioButton
redButton
DOCUMENT ME!private ModelImage
resultImage
private int
RGBOffset
DOCUMENT ME!private static int
SLICE_GROUPING
private javax.swing.JRadioButton
sliceButton
private javax.swing.JTextField
textMaxDistance
private javax.swing.JTextField
textMinDistance
private static int
VOI_GROUPING
private javax.swing.JRadioButton
voiButton
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager
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Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled
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Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
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Constructor Summary
Constructors Constructor Description JDialogHurstIndex()
Empty constructor needed for dynamic instantiation.JDialogHurstIndex(java.awt.Frame theParentFrame, ModelImage im)
Creates a new JDialogHurstIndex object.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
actionPerformed(java.awt.event.ActionEvent event)
Closes dialog box when the OK button is pressed and calls the algorithm.void
algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented.protected void
callAlgorithm()
Once all the necessary variables are set, call the Hurst Index algorithm.ParameterTable
createInputParameters()
Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()
).ParameterTable
createOutputParameters()
Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).protected void
doPostAlgorithmActions()
Store the result image in the script runner's image table now that the action execution is finished.ActionMetadata
getActionMetadata()
Return meta-information about this discoverable action for categorization and labeling purposes.ModelImage
getResultImage()
private void
init()
Sets up the GUI (panels, buttons, etc) and displays it on the screen.boolean
isActionComplete()
Returns whether the action has successfully completed its execution.void
setGrouping(int grouping)
protected void
setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.void
setIntegerDistanceRound(boolean integerDistanceRound)
If true, the rounding of the Euclidean distance is taken as the distance If false, the Euclidean distance is taken as the distancevoid
setMaxDistance(double maxDistance)
void
setMinDistance(double minDistance)
void
setRGBOffset(int RGBoffset)
Accessor that sets the RGBOffset.private boolean
setVariables()
Use the GUI results to set up the variables needed to run the algorithm.protected void
storeParamsFromGUI()
Record the parameters just used to run this algorithm in a script.-
Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete
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Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
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Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
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Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
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Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
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Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface
insertScriptLine, scriptRun
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Field Detail
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RED_OFFSET
private static final int RED_OFFSET
Red channel.- See Also:
- Constant Field Values
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GREEN_OFFSET
private static final int GREEN_OFFSET
Green channel.- See Also:
- Constant Field Values
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BLUE_OFFSET
private static final int BLUE_OFFSET
Blue channel.- See Also:
- Constant Field Values
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colorPanel
private javax.swing.JPanel colorPanel
DOCUMENT ME!
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colorGroup
private javax.swing.ButtonGroup colorGroup
DOCUMENT ME!
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redButton
private javax.swing.JRadioButton redButton
DOCUMENT ME!
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greenButton
private javax.swing.JRadioButton greenButton
DOCUMENT ME!
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blueButton
private javax.swing.JRadioButton blueButton
DOCUMENT ME!
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RGBOffset
private int RGBOffset
DOCUMENT ME!
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minDistance
private double minDistance
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maxDistance
private double maxDistance
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integerDistanceRound
private boolean integerDistanceRound
If true, take rounding of Euclidean distance as distance If false, take Euclidean distance as distance
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labelDimensionality
private javax.swing.JLabel labelDimensionality
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textMinDistance
private javax.swing.JTextField textMinDistance
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labelMinDistance
private javax.swing.JLabel labelMinDistance
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textMaxDistance
private javax.swing.JTextField textMaxDistance
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labelMaxDistance
private javax.swing.JLabel labelMaxDistance
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integerDistanceRoundCheckBox
private javax.swing.JCheckBox integerDistanceRoundCheckBox
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distancePanel
private javax.swing.JPanel distancePanel
DOCUMENT ME!
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image
private ModelImage image
DOCUMENT ME!
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hurstAlgo
private AlgorithmHurstIndex hurstAlgo
DOCUMENT ME!
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pixelOrVOIGroup
private javax.swing.ButtonGroup pixelOrVOIGroup
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pixelButton
private javax.swing.JRadioButton pixelButton
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voiButton
private javax.swing.JRadioButton voiButton
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sliceButton
private javax.swing.JRadioButton sliceButton
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PIXEL_GROUPING
private static final int PIXEL_GROUPING
- See Also:
- Constant Field Values
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VOI_GROUPING
private static final int VOI_GROUPING
- See Also:
- Constant Field Values
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SLICE_GROUPING
private static final int SLICE_GROUPING
- See Also:
- Constant Field Values
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grouping
private int grouping
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resultImage
private ModelImage resultImage
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Constructor Detail
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JDialogHurstIndex
public JDialogHurstIndex()
Empty constructor needed for dynamic instantiation.
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JDialogHurstIndex
public JDialogHurstIndex(java.awt.Frame theParentFrame, ModelImage im)
Creates a new JDialogHurstIndex object.- Parameters:
theParentFrame
- Parent frame.im
- Source image.
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Method Detail
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actionPerformed
public void actionPerformed(java.awt.event.ActionEvent event)
Closes dialog box when the OK button is pressed and calls the algorithm.- Specified by:
actionPerformed
in interfacejava.awt.event.ActionListener
- Overrides:
actionPerformed
in classJDialogBase
- Parameters:
event
- Event that triggers function.
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algorithmPerformed
public void algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.- Specified by:
algorithmPerformed
in interfaceAlgorithmInterface
- Parameters:
algorithm
- Algorithm that caused the event.
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setMinDistance
public void setMinDistance(double minDistance)
- Parameters:
minDistance
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setMaxDistance
public void setMaxDistance(double maxDistance)
- Parameters:
maxDistance
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setIntegerDistanceRound
public void setIntegerDistanceRound(boolean integerDistanceRound)
If true, the rounding of the Euclidean distance is taken as the distance If false, the Euclidean distance is taken as the distance- Parameters:
integerDistanceRound
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setRGBOffset
public void setRGBOffset(int RGBoffset)
Accessor that sets the RGBOffset.- Parameters:
RGBoffset
- DOCUMENT ME!
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setGrouping
public void setGrouping(int grouping)
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getResultImage
public ModelImage getResultImage()
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callAlgorithm
protected void callAlgorithm()
Once all the necessary variables are set, call the Hurst Index algorithm.- Specified by:
callAlgorithm
in classJDialogScriptableBase
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doPostAlgorithmActions
protected void doPostAlgorithmActions()
Store the result image in the script runner's image table now that the action execution is finished.- Overrides:
doPostAlgorithmActions
in classJDialogScriptableBase
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setGUIFromParams
protected void setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.- Specified by:
setGUIFromParams
in classJDialogScriptableBase
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storeParamsFromGUI
protected void storeParamsFromGUI() throws ParserException
Record the parameters just used to run this algorithm in a script.- Specified by:
storeParamsFromGUI
in classJDialogScriptableBase
- Throws:
ParserException
- If there is a problem creating/recording the new parameters.
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init
private void init()
Sets up the GUI (panels, buttons, etc) and displays it on the screen.
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setVariables
private boolean setVariables()
Use the GUI results to set up the variables needed to run the algorithm.- Returns:
true
if parameters set successfully,false
otherwise.
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getActionMetadata
public ActionMetadata getActionMetadata()
Return meta-information about this discoverable action for categorization and labeling purposes.- Returns:
- Metadata for this action.
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createInputParameters
public ParameterTable createInputParameters()
Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()
).- Returns:
- A parameter table listing the inputs of this algorithm.
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createOutputParameters
public ParameterTable createOutputParameters()
Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).- Returns:
- A parameter table listing the outputs of this algorithm.
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isActionComplete
public boolean isActionComplete()
Returns whether the action has successfully completed its execution.- Returns:
- True, if the action is complete. False, if the action failed or is still running.
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